Wall clock time and date at job start Mon Mar 30 2020 07:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.20754 * 120.00583 * 2 1 4 4 C 1.50704 * 119.99451 * 179.97438 * 2 1 3 5 5 C 1.53007 * 109.46907 * 185.76968 * 4 2 1 6 6 H 1.08997 * 109.46059 * 306.03411 * 5 4 2 7 7 C 1.53040 * 109.45038 * 66.00766 * 5 4 2 8 8 C 1.53126 * 109.27436 * 179.19151 * 7 5 4 9 9 C 1.53119 * 109.16087 * 302.33944 * 8 7 5 10 10 C 1.53046 * 109.27211 * 57.65709 * 9 8 7 11 11 N 1.46839 * 109.52411 * 300.81894 * 10 9 8 12 12 C 1.46904 * 110.99741 * 185.84318 * 11 10 9 13 13 C 1.52995 * 109.47511 * 51.30255 * 12 11 10 14 14 C 1.52999 * 109.47420 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.46952 * 179.97438 * 14 13 12 16 16 C 1.50707 * 109.46596 * 180.02562 * 15 14 13 17 17 H 1.07992 * 120.00480 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99432 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00378 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99720 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.46914 * 179.97438 * 20 18 16 22 22 H 1.48501 * 109.46674 * 299.99781 * 20 18 16 23 23 H 1.48497 * 109.47253 * 59.99237 * 20 18 16 24 24 H 1.08997 * 109.47439 * 240.00275 * 1 2 3 25 25 H 1.09001 * 109.47130 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47284 * 119.99835 * 1 2 3 27 27 H 1.08999 * 109.47511 * 65.77533 * 4 2 1 28 28 H 1.09000 * 109.47588 * 305.76853 * 4 2 1 29 29 H 1.08998 * 109.50175 * 299.12733 * 7 5 4 30 30 H 1.08994 * 109.50490 * 59.21090 * 7 5 4 31 31 H 1.08992 * 109.52395 * 62.25246 * 8 7 5 32 32 H 1.09007 * 109.51887 * 182.37324 * 8 7 5 33 33 H 1.08994 * 109.50245 * 177.59444 * 9 8 7 34 34 H 1.08991 * 109.50397 * 297.68121 * 9 8 7 35 35 H 1.09006 * 109.45622 * 180.79930 * 10 9 8 36 36 H 1.09002 * 109.45806 * 60.83805 * 10 9 8 37 37 H 1.09007 * 109.47162 * 291.30274 * 12 11 10 38 38 H 1.08993 * 109.47024 * 171.30655 * 12 11 10 39 39 H 1.09007 * 109.46892 * 59.99854 * 13 12 11 40 40 H 1.09004 * 109.46823 * 300.00403 * 13 12 11 41 41 H 1.09004 * 109.46634 * 60.00111 * 14 13 12 42 42 H 1.08993 * 109.47155 * 300.00424 * 14 13 12 43 43 H 1.08995 * 109.47339 * 60.00345 * 15 14 13 44 44 H 1.09000 * 109.47349 * 299.99936 * 15 14 13 45 45 H 0.97005 * 119.99791 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0457 0.0000 4 6 2.2604 -1.3052 0.0006 5 6 3.7583 -1.0293 0.1455 6 1 4.0749 -0.3285 -0.6270 7 6 4.0344 -0.4267 1.5249 8 6 5.5369 -0.1709 1.6732 9 6 6.2931 -1.4868 1.4705 10 6 5.9514 -2.0587 0.0927 11 7 4.5036 -2.2863 0.0011 12 6 4.1556 -2.9632 -1.2554 13 6 5.0303 -4.2071 -1.4238 14 6 4.6674 -4.9125 -2.7321 15 6 5.5426 -6.1561 -2.9007 16 6 5.1855 -6.8505 -4.1897 17 1 4.4121 -6.4453 -4.8252 18 6 5.8464 -8.0034 -4.5576 19 7 6.7886 -8.4967 -3.7841 20 14 5.4043 -8.8638 -6.1557 21 1 6.2537 -10.0708 -6.3193 22 1 3.9748 -9.2646 -6.1230 23 1 5.6333 -7.9397 -7.2953 24 1 -0.3634 -0.5138 0.8900 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3634 -0.5138 -0.8900 27 1 2.0768 -1.8311 -0.9363 28 1 1.9218 -1.9199 0.8347 29 1 3.4935 0.5142 1.6258 30 1 3.7048 -1.1208 2.2979 31 1 5.8587 0.5532 0.9249 32 1 5.7433 0.2191 2.6700 33 1 7.3657 -1.3034 1.5326 34 1 6.0001 -2.1976 2.2430 35 1 6.4772 -3.0030 -0.0491 36 1 6.2578 -1.3531 -0.6795 37 1 4.3235 -2.2851 -2.0921 38 1 3.1064 -3.2574 -1.2310 39 1 4.8625 -4.8853 -0.5871 40 1 6.0796 -3.9129 -1.4481 41 1 4.8349 -4.2345 -3.5690 42 1 3.6182 -5.2068 -2.7073 43 1 5.3756 -6.8342 -2.0639 44 1 6.5917 -5.8614 -2.9257 45 1 7.0184 -8.0497 -2.9544 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385810693.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:05 Heat of formation + Delta-G solvation = -90.766686 kcal Electronic energy + Delta-G solvation = -20701.463775 eV Core-core repulsion = 17716.657251 eV Total energy + Delta-G solvation = -2984.806524 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.18745 -39.66259 -36.99246 -35.28736 -34.02056 -33.12092 -31.34680 -29.76073 -28.14495 -26.48591 -25.01993 -23.42026 -22.52352 -21.59565 -20.74661 -20.35754 -18.86155 -17.38245 -16.90334 -16.52668 -16.43234 -15.84042 -15.63818 -15.51162 -15.20852 -15.05058 -14.76216 -14.62068 -14.13508 -14.03137 -13.76537 -13.19294 -13.09406 -12.98421 -12.79527 -12.76565 -12.59727 -12.34573 -12.15341 -12.02316 -11.95744 -11.70146 -11.66482 -11.50762 -11.16162 -11.10796 -10.62889 -10.54569 -10.53332 -9.33753 -8.69478 -6.39917 1.01435 1.52217 1.61143 1.80538 2.56898 2.68450 3.15498 3.31785 3.67133 3.78347 3.86429 3.98948 4.07542 4.13285 4.23935 4.26505 4.36049 4.42013 4.48670 4.53487 4.60027 4.64188 4.69532 4.72497 4.77495 4.85245 4.89345 4.92392 5.00485 5.03259 5.09253 5.09862 5.17042 5.17567 5.21506 5.27797 5.42042 5.47417 5.56368 6.00558 6.06256 6.12592 6.19001 6.57718 6.58361 7.42899 8.71362 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.023394 B = 0.003462 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.581119 B = 8085.771100 C = 9085.436189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.359 3.641 3 O -0.499 6.499 4 C -0.173 4.173 5 C 0.093 3.907 6 H 0.022 0.978 7 C -0.109 4.109 8 C -0.119 4.119 9 C -0.112 4.112 10 C 0.046 3.954 11 N -0.533 5.533 12 C 0.061 3.939 13 C -0.107 4.107 14 C -0.090 4.090 15 C 0.008 3.992 16 C -0.622 4.622 17 H 0.052 0.948 18 C -0.042 4.042 19 N -0.939 5.939 20 Si 1.119 2.881 21 H -0.283 1.283 22 H -0.266 1.266 23 H -0.269 1.269 24 H 0.115 0.885 25 H 0.077 0.923 26 H 0.109 0.891 27 H 0.110 0.890 28 H 0.124 0.876 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.021 0.979 37 H 0.025 0.975 38 H 0.093 0.907 39 H 0.061 0.939 40 H 0.052 0.948 41 H 0.045 0.955 42 H 0.056 0.944 43 H -0.012 1.012 44 H -0.017 1.017 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.132 17.563 11.443 23.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.238 3.762 3 O -0.376 6.376 4 C -0.211 4.211 5 C -0.015 4.015 6 H 0.040 0.960 7 C -0.146 4.146 8 C -0.156 4.156 9 C -0.149 4.149 10 C -0.082 4.082 11 N -0.257 5.257 12 C -0.066 4.066 13 C -0.145 4.145 14 C -0.128 4.128 15 C -0.029 4.029 16 C -0.659 4.659 17 H 0.070 0.930 18 C -0.239 4.239 19 N -0.577 5.577 20 Si 0.939 3.061 21 H -0.209 1.209 22 H -0.191 1.191 23 H -0.194 1.194 24 H 0.133 0.867 25 H 0.096 0.904 26 H 0.128 0.872 27 H 0.128 0.872 28 H 0.142 0.858 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.039 0.961 37 H 0.043 0.957 38 H 0.111 0.889 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.007 0.993 44 H 0.002 0.998 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.588 16.531 10.896 22.452 hybrid contribution 0.337 1.649 0.238 1.700 sum -10.252 18.180 11.133 23.655 Atomic orbital electron populations 1.22328 0.91518 1.05299 1.06514 1.25035 0.93515 0.89393 0.68302 1.90396 1.73005 1.36417 1.37832 1.22349 0.94122 0.98040 1.06560 1.21424 0.93159 0.89223 0.97682 0.95951 1.21639 0.96749 1.00533 0.95708 1.21556 0.95074 0.96971 1.02013 1.21572 1.00224 0.97035 0.96100 1.22228 0.88339 1.00115 0.97516 1.62045 1.06302 1.22589 1.34808 1.22140 1.00707 0.94300 0.89500 1.21607 0.99098 0.96487 0.97332 1.21289 0.99281 0.95900 0.96346 1.19185 0.94261 0.94127 0.95371 1.22563 1.23057 1.12441 1.07874 0.93015 1.27519 0.93303 0.96557 1.06531 1.70918 1.31005 1.42187 1.13563 0.82928 0.76704 0.75405 0.71037 1.20883 1.19118 1.19439 0.86653 0.90433 0.87217 0.87168 0.85760 0.91385 0.90728 0.93254 0.90414 0.90624 0.90976 0.90680 0.96068 0.95711 0.88895 0.92035 0.92948 0.93589 0.92531 0.99340 0.99823 0.93610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.87 10.26 71.23 0.73 -1.14 16 2 C 0.36 6.09 6.89 29.10 0.20 6.29 16 3 O -0.50 -12.47 14.98 -1.43 -0.02 -12.49 16 4 C -0.17 -2.89 4.87 29.85 0.15 -2.75 16 5 C 0.09 2.09 1.55 44.94 0.07 2.16 16 6 H 0.02 0.61 7.83 -2.39 -0.02 0.59 16 7 C -0.11 -2.21 5.12 30.65 0.16 -2.06 16 8 C -0.12 -2.34 6.00 30.68 0.18 -2.15 16 9 C -0.11 -2.31 6.09 30.65 0.19 -2.12 16 10 C 0.05 1.16 5.02 86.33 0.43 1.59 16 11 N -0.53 -13.27 4.60 -871.10 -4.01 -17.28 16 12 C 0.06 1.64 4.45 86.30 0.38 2.03 16 13 C -0.11 -3.61 4.69 30.59 0.14 -3.47 16 14 C -0.09 -3.71 5.15 30.59 0.16 -3.55 16 15 C 0.01 0.41 4.28 29.85 0.13 0.53 16 16 C -0.62 -36.37 9.11 25.60 0.23 -36.14 16 17 H 0.05 2.92 7.74 -2.91 -0.02 2.89 16 18 C -0.04 -2.50 5.46 84.66 0.46 -2.04 16 19 N -0.94 -59.65 13.65 21.45 0.29 -59.36 16 20 Si 1.12 50.76 29.90 68.60 2.05 52.81 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 22 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 24 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.08 0.81 8.12 -2.39 -0.02 0.79 16 26 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.11 1.73 6.08 -2.39 -0.01 1.72 16 28 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.07 1.47 6.28 -2.39 -0.01 1.45 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 2.05 5.84 -2.38 -0.01 2.04 16 36 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.02 0.70 8.13 -2.38 -0.02 0.68 16 38 H 0.09 2.20 6.36 -2.39 -0.02 2.19 16 39 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 40 H 0.05 1.81 6.19 -2.39 -0.01 1.80 16 41 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 43 H -0.01 -0.66 8.01 -2.39 -0.02 -0.68 16 44 H -0.02 -0.94 8.01 -2.39 -0.02 -0.96 16 45 H 0.25 16.38 7.22 -92.70 -0.67 15.71 16 Total: -1.00 -70.82 346.91 2.96 -67.87 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 1.03 Total: 11.26 kcal Atomic # 6 Polarization: -46.42 SS G_CDS: 3.62 Total: -42.81 kcal Atomic # 7 Polarization: -72.92 SS G_CDS: -3.72 Total: -76.64 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -0.02 Total: -12.49 kcal Atomic # 14 Polarization: 50.76 SS G_CDS: 2.05 Total: 52.81 kcal Total: -70.82 2.96 -67.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385810693.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.901 kcal (2) G-P(sol) polarization free energy of solvation -70.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds