Wall clock time and date at job start Mon Mar 30 2020 08:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.46811 * 294.99812 * 3 2 1 5 5 C 1.53000 * 109.46967 * 300.00024 * 4 3 2 6 6 C 1.53002 * 109.47101 * 299.99830 * 5 4 3 7 7 N 1.46901 * 109.46883 * 180.02562 * 6 5 4 8 8 C 1.46901 * 111.00073 * 183.95708 * 7 6 5 9 9 C 1.46901 * 111.00460 * 60.00159 * 7 6 5 10 10 C 1.52993 * 109.47763 * 189.99865 * 9 7 6 11 11 C 1.52990 * 109.47408 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47151 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47008 * 180.02562 * 12 11 10 14 14 H 1.07993 * 120.00120 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99833 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00102 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99948 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47272 * 89.99826 * 17 15 13 19 19 H 1.48498 * 109.46902 * 209.99616 * 17 15 13 20 20 H 1.48498 * 109.46916 * 329.99728 * 17 15 13 21 21 C 1.53003 * 109.46897 * 60.00558 * 6 5 4 22 22 C 1.52999 * 109.47054 * 174.99886 * 3 2 1 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 29 29 H 1.08998 * 109.47609 * 60.00099 * 4 3 2 30 30 H 1.09002 * 109.46911 * 180.02562 * 4 3 2 31 31 H 1.09008 * 109.47015 * 180.02562 * 5 4 3 32 32 H 1.08992 * 109.47259 * 60.00278 * 5 4 3 33 33 H 1.09002 * 109.47126 * 299.99879 * 6 5 4 34 34 H 1.08999 * 109.46833 * 59.99700 * 8 7 6 35 35 H 1.08998 * 109.47374 * 180.02562 * 8 7 6 36 36 H 1.09004 * 109.46868 * 299.99989 * 8 7 6 37 37 H 1.08998 * 109.47061 * 310.00477 * 9 7 6 38 38 H 1.09000 * 109.46734 * 69.99813 * 9 7 6 39 39 H 1.09004 * 109.46990 * 300.00762 * 10 9 7 40 40 H 1.09000 * 109.46794 * 59.99640 * 10 9 7 41 41 H 1.08997 * 109.47762 * 299.99713 * 11 10 9 42 42 H 1.09000 * 109.47334 * 60.00097 * 11 10 9 43 43 H 1.09000 * 109.47134 * 300.00026 * 12 11 10 44 44 H 1.09000 * 109.47196 * 60.00320 * 12 11 10 45 45 H 0.96992 * 120.00065 * 180.02562 * 16 15 13 46 46 H 1.09003 * 109.46575 * 179.97438 * 21 6 5 47 47 H 1.08992 * 109.47256 * 59.99679 * 21 6 5 48 48 H 1.09002 * 109.47069 * 179.97438 * 22 3 2 49 49 H 1.08994 * 109.47518 * 299.99758 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.6352 2.1265 -1.3074 5 6 2.2454 1.3698 -2.4889 6 6 3.7702 1.3717 -2.3632 7 7 4.3560 0.6457 -3.4980 8 6 5.8153 0.5458 -3.3623 9 6 3.9877 1.2758 -4.7729 10 6 4.3994 0.3639 -5.9303 11 6 4.0153 1.0200 -7.2579 12 6 4.4264 0.1077 -8.4154 13 6 4.0486 0.7542 -9.7232 14 1 3.5634 1.7190 -9.7283 15 6 4.3214 0.1135 -10.9132 16 7 4.9117 -1.0617 -10.9070 17 14 3.8525 0.9146 -12.5343 18 1 4.9785 1.7547 -13.0152 19 1 3.5559 -0.1379 -13.5390 20 1 2.6503 1.7637 -12.3372 21 6 4.1749 0.6877 -1.0558 22 6 3.5648 1.4444 0.1258 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.6054 1.9816 0.8418 29 1 0.5490 2.1252 -1.3970 30 1 1.9990 3.1541 -1.3076 31 1 1.9574 1.8574 -3.4204 32 1 1.8820 0.3422 -2.4889 33 1 4.1335 2.3994 -2.3633 34 1 6.0590 0.0130 -2.4431 35 1 6.2233 0.0042 -4.2157 36 1 6.2463 1.5464 -3.3275 37 1 2.9099 1.4352 -4.8014 38 1 4.4992 2.2339 -4.8656 39 1 5.4773 0.2046 -5.9017 40 1 3.8880 -0.5942 -5.8375 41 1 2.9373 1.1789 -7.2864 42 1 4.5263 1.9782 -7.3510 43 1 5.5043 -0.0516 -8.3873 44 1 3.9149 -0.8504 -8.3223 45 1 5.1040 -1.5123 -11.7441 46 1 5.2613 0.6886 -0.9665 47 1 3.8116 -0.3399 -1.0558 48 1 3.9282 2.4720 0.1253 49 1 3.8532 0.9571 1.0571 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395357152.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:57:02 Heat of formation + Delta-G solvation = -43.136661 kcal Electronic energy + Delta-G solvation = -20997.176932 eV Core-core repulsion = 18150.268895 eV Total energy + Delta-G solvation = -2846.908037 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.93572 -37.13305 -34.43523 -32.73614 -31.77831 -31.14824 -29.12114 -28.13377 -26.05119 -24.23306 -23.37641 -22.56201 -21.44409 -20.25253 -19.94945 -18.56426 -16.49270 -16.12491 -15.45504 -15.24786 -14.79191 -14.62387 -14.37488 -14.17316 -13.82949 -13.34986 -13.22505 -12.74251 -12.63425 -12.43217 -12.21743 -12.09677 -11.78556 -11.66646 -11.51895 -11.32908 -11.25557 -11.09897 -10.92255 -10.80866 -10.51648 -10.45285 -10.32202 -10.30909 -10.17020 -9.88826 -9.54827 -9.20875 -8.96040 -8.29756 -8.17058 -5.94779 -3.96832 3.34597 3.40557 3.44221 3.93734 4.46411 4.50025 4.55648 4.67182 4.91939 4.99444 5.09766 5.16731 5.25506 5.27951 5.38860 5.40289 5.40703 5.43117 5.48063 5.52822 5.62024 5.65150 5.72173 5.76370 5.80017 5.81720 5.90444 5.94561 6.04555 6.05371 6.06814 6.14709 6.16717 6.21920 6.24939 6.38103 6.41608 6.60158 6.88107 7.03772 7.16223 7.24932 7.33995 7.74872 7.91414 8.06830 8.49752 9.10817 9.66815 11.16625 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.031436 B = 0.002965 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.492291 B = 9440.917235 C = 9837.054065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.087 4.087 4 C -0.114 4.114 5 C -0.117 4.117 6 C 0.087 3.913 7 N -0.539 5.539 8 C 0.019 3.981 9 C 0.052 3.948 10 C -0.113 4.113 11 C -0.109 4.109 12 C 0.022 3.978 13 C -0.519 4.519 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.115 4.115 22 C -0.113 4.113 23 H 0.051 0.949 24 H 0.057 0.943 25 H 0.049 0.951 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.034 0.966 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.020 0.980 37 H 0.075 0.925 38 H 0.027 0.973 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.046 0.954 42 H 0.043 0.957 43 H 0.014 0.986 44 H 0.015 0.985 45 H 0.260 0.740 46 H 0.061 0.939 47 H 0.074 0.926 48 H 0.058 0.942 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.402 4.513 24.673 25.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.105 4.105 4 C -0.152 4.152 5 C -0.154 4.154 6 C -0.021 4.021 7 N -0.263 5.263 8 C -0.129 4.129 9 C -0.075 4.075 10 C -0.151 4.151 11 C -0.147 4.147 12 C -0.015 4.015 13 C -0.558 4.558 14 H 0.072 0.928 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.153 4.153 22 C -0.151 4.151 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.052 0.948 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.038 0.962 37 H 0.093 0.907 38 H 0.046 0.954 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.032 0.968 44 H 0.034 0.966 45 H 0.069 0.931 46 H 0.079 0.921 47 H 0.092 0.908 48 H 0.077 0.923 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.528 3.898 24.553 25.270 hybrid contribution 0.200 1.242 -1.010 1.613 sum -4.328 5.140 23.544 24.484 Atomic orbital electron populations 1.21822 0.96153 1.01454 1.01676 1.21683 0.95665 0.96453 1.02363 1.21148 0.95356 0.96358 0.97661 1.21584 1.00426 0.98880 0.94306 1.21687 0.94148 1.01711 0.97886 1.21597 0.94899 0.95018 0.90623 1.62060 1.10069 1.52199 1.01932 1.22466 0.87883 0.99850 1.02661 1.22310 1.00836 0.95754 0.88602 1.21662 1.00817 0.98992 0.93607 1.21595 0.99772 0.99288 0.94069 1.19084 0.96534 0.94550 0.91367 1.21299 1.38660 1.04485 0.91329 0.92802 1.25034 0.95370 0.94940 0.99202 1.69967 1.42471 1.14494 1.26663 0.86616 0.78827 0.79035 0.83660 1.20728 1.21237 1.19898 1.21670 1.00068 1.00357 0.93174 1.21556 0.95104 1.00370 0.98038 0.92970 0.92399 0.93176 0.92435 0.90780 0.91621 0.91610 0.92359 0.91709 0.90614 0.94809 0.91544 0.90735 0.96151 0.90674 0.95447 0.92649 0.91772 0.93539 0.93797 0.96794 0.96619 0.93071 0.92077 0.90777 0.92291 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.67 37.16 0.36 -0.80 16 2 C -0.12 -0.99 4.70 -26.73 -0.13 -1.12 16 3 C -0.09 -0.69 2.66 -90.62 -0.24 -0.93 16 4 C -0.11 -0.99 5.21 -26.73 -0.14 -1.13 16 5 C -0.12 -1.23 4.73 -26.73 -0.13 -1.36 16 6 C 0.09 0.97 1.94 -67.71 -0.13 0.84 16 7 N -0.54 -7.17 4.63 -234.88 -1.09 -8.26 16 8 C 0.02 0.24 8.91 60.07 0.54 0.78 16 9 C 0.05 0.78 4.77 -3.83 -0.02 0.76 16 10 C -0.11 -2.01 5.14 -26.74 -0.14 -2.15 16 11 C -0.11 -2.32 5.15 -26.73 -0.14 -2.46 16 12 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 13 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 14 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.58 13.29 55.43 0.74 -26.85 16 17 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 21 C -0.12 -1.10 4.57 -26.73 -0.12 -1.22 16 22 C -0.11 -0.91 5.45 -26.73 -0.15 -1.05 16 23 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 0.45 6.57 -51.93 -0.34 0.11 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.68 4.83 -51.93 -0.25 0.43 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.54 6.57 -51.93 -0.34 0.20 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.74 6.20 -51.92 -0.32 0.42 16 32 H 0.08 0.85 6.32 -51.93 -0.33 0.52 16 33 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.71 6.24 -51.93 -0.32 0.39 16 35 H 0.07 0.99 6.30 -51.93 -0.33 0.66 16 36 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.07 1.10 5.83 -51.93 -0.30 0.79 16 38 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 39 H 0.05 0.99 6.47 -51.93 -0.34 0.65 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 46 H 0.06 0.57 6.35 -51.93 -0.33 0.25 16 47 H 0.07 0.75 6.54 -51.93 -0.34 0.41 16 48 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 49 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 357.58 15.07 5.39 5.39 Total: -1.00 -30.07 357.58 -10.39 -40.46 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -9.42 Total: -4.47 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: -0.98 Total: -23.32 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: -0.35 Total: -35.10 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.07 -10.39 -40.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395357152.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.680 kcal (2) G-P(sol) polarization free energy of solvation -30.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds