Wall clock time and date at job start Mon Mar 30 2020 08:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.46811 * 294.99812 * 3 2 1 5 5 C 1.53000 * 109.46967 * 300.00024 * 4 3 2 6 6 C 1.53002 * 109.47101 * 299.99830 * 5 4 3 7 7 N 1.46901 * 109.46883 * 180.02562 * 6 5 4 8 8 C 1.46901 * 111.00073 * 183.95708 * 7 6 5 9 9 C 1.46901 * 111.00460 * 60.00159 * 7 6 5 10 10 C 1.52993 * 109.47763 * 189.99865 * 9 7 6 11 11 C 1.52990 * 109.47408 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47151 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47008 * 180.02562 * 12 11 10 14 14 H 1.07993 * 120.00120 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99833 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00102 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99948 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47272 * 89.99826 * 17 15 13 19 19 H 1.48498 * 109.46902 * 209.99616 * 17 15 13 20 20 H 1.48498 * 109.46916 * 329.99728 * 17 15 13 21 21 C 1.53003 * 109.46897 * 60.00558 * 6 5 4 22 22 C 1.52999 * 109.47054 * 174.99886 * 3 2 1 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 29 29 H 1.08998 * 109.47609 * 60.00099 * 4 3 2 30 30 H 1.09002 * 109.46911 * 180.02562 * 4 3 2 31 31 H 1.09008 * 109.47015 * 180.02562 * 5 4 3 32 32 H 1.08992 * 109.47259 * 60.00278 * 5 4 3 33 33 H 1.09002 * 109.47126 * 299.99879 * 6 5 4 34 34 H 1.08999 * 109.46833 * 59.99700 * 8 7 6 35 35 H 1.08998 * 109.47374 * 180.02562 * 8 7 6 36 36 H 1.09004 * 109.46868 * 299.99989 * 8 7 6 37 37 H 1.08998 * 109.47061 * 310.00477 * 9 7 6 38 38 H 1.09000 * 109.46734 * 69.99813 * 9 7 6 39 39 H 1.09004 * 109.46990 * 300.00762 * 10 9 7 40 40 H 1.09000 * 109.46794 * 59.99640 * 10 9 7 41 41 H 1.08997 * 109.47762 * 299.99713 * 11 10 9 42 42 H 1.09000 * 109.47334 * 60.00097 * 11 10 9 43 43 H 1.09000 * 109.47134 * 300.00026 * 12 11 10 44 44 H 1.09000 * 109.47196 * 60.00320 * 12 11 10 45 45 H 0.96992 * 120.00065 * 180.02562 * 16 15 13 46 46 H 1.09003 * 109.46575 * 179.97438 * 21 6 5 47 47 H 1.08992 * 109.47256 * 59.99679 * 21 6 5 48 48 H 1.09002 * 109.47069 * 179.97438 * 22 3 2 49 49 H 1.08994 * 109.47518 * 299.99758 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.6352 2.1265 -1.3074 5 6 2.2454 1.3698 -2.4889 6 6 3.7702 1.3717 -2.3632 7 7 4.3560 0.6457 -3.4980 8 6 5.8153 0.5458 -3.3623 9 6 3.9877 1.2758 -4.7729 10 6 4.3994 0.3639 -5.9303 11 6 4.0153 1.0200 -7.2579 12 6 4.4264 0.1077 -8.4154 13 6 4.0486 0.7542 -9.7232 14 1 3.5634 1.7190 -9.7283 15 6 4.3214 0.1135 -10.9132 16 7 4.9117 -1.0617 -10.9070 17 14 3.8525 0.9146 -12.5343 18 1 4.9785 1.7547 -13.0152 19 1 3.5559 -0.1379 -13.5390 20 1 2.6503 1.7637 -12.3372 21 6 4.1749 0.6877 -1.0558 22 6 3.5648 1.4444 0.1258 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.6054 1.9816 0.8418 29 1 0.5490 2.1252 -1.3970 30 1 1.9990 3.1541 -1.3076 31 1 1.9574 1.8574 -3.4204 32 1 1.8820 0.3422 -2.4889 33 1 4.1335 2.3994 -2.3633 34 1 6.0590 0.0130 -2.4431 35 1 6.2233 0.0042 -4.2157 36 1 6.2463 1.5464 -3.3275 37 1 2.9099 1.4352 -4.8014 38 1 4.4992 2.2339 -4.8656 39 1 5.4773 0.2046 -5.9017 40 1 3.8880 -0.5942 -5.8375 41 1 2.9373 1.1789 -7.2864 42 1 4.5263 1.9782 -7.3510 43 1 5.5043 -0.0516 -8.3873 44 1 3.9149 -0.8504 -8.3223 45 1 5.1040 -1.5123 -11.7441 46 1 5.2613 0.6886 -0.9665 47 1 3.8116 -0.3399 -1.0558 48 1 3.9282 2.4720 0.1253 49 1 3.8532 0.9571 1.0571 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395357152.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:57:01 Heat of formation + Delta-G solvation = -58.549307 kcal Electronic energy + Delta-G solvation = -20997.845274 eV Core-core repulsion = 18150.268895 eV Total energy + Delta-G solvation = -2847.576379 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.75856 -38.17401 -36.17511 -34.36716 -32.98633 -31.92186 -30.50684 -29.21019 -27.45027 -25.70511 -24.19729 -23.51838 -22.68726 -21.66192 -21.31114 -19.28599 -18.43641 -17.32077 -16.56896 -16.46057 -16.18598 -15.74232 -15.63420 -15.16241 -14.70132 -14.44910 -14.32935 -14.04772 -13.77019 -13.62062 -13.41744 -13.31623 -13.01740 -12.86416 -12.75090 -12.50882 -12.41451 -12.30197 -12.19874 -12.04052 -11.90565 -11.81845 -11.51432 -11.33603 -11.26586 -11.13332 -10.91646 -10.90887 -10.66350 -10.55861 -9.23036 -8.20157 -6.31860 1.39001 1.40938 1.52193 2.40584 2.92784 3.12394 3.72176 3.82857 3.97036 4.04728 4.17164 4.20443 4.27004 4.39286 4.44126 4.47440 4.55027 4.56798 4.59105 4.65412 4.67394 4.71023 4.79522 4.82890 4.86201 4.89083 4.98741 5.01864 5.11502 5.15874 5.18760 5.23940 5.24854 5.28234 5.29977 5.33470 5.36986 5.43157 5.50062 5.55040 5.57648 5.69337 5.77105 5.86316 6.15903 6.24029 6.27871 6.85583 7.37453 8.91860 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.031436 B = 0.002965 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.492291 B = 9440.917235 C = 9837.054065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.084 4.084 4 C -0.110 4.110 5 C -0.115 4.115 6 C 0.088 3.912 7 N -0.548 5.548 8 C 0.020 3.980 9 C 0.063 3.937 10 C -0.102 4.102 11 C -0.096 4.096 12 C 0.025 3.975 13 C -0.545 4.545 14 H 0.060 0.940 15 C -0.003 4.003 16 N -0.935 5.935 17 Si 0.967 3.033 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.262 1.262 21 C -0.110 4.110 22 C -0.109 4.109 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.031 0.969 34 H 0.083 0.917 35 H 0.060 0.940 36 H 0.024 0.976 37 H 0.079 0.921 38 H 0.028 0.972 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.048 0.952 43 H -0.012 1.012 44 H -0.011 1.011 45 H 0.264 0.736 46 H 0.063 0.937 47 H 0.067 0.933 48 H 0.062 0.938 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.056 5.847 25.717 26.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.102 4.102 4 C -0.148 4.148 5 C -0.152 4.152 6 C -0.020 4.020 7 N -0.272 5.272 8 C -0.128 4.128 9 C -0.065 4.065 10 C -0.140 4.140 11 C -0.134 4.134 12 C -0.013 4.013 13 C -0.583 4.583 14 H 0.078 0.922 15 C -0.200 4.200 16 N -0.575 5.575 17 Si 0.791 3.209 18 H -0.197 1.197 19 H -0.206 1.206 20 H -0.187 1.187 21 C -0.148 4.148 22 C -0.147 4.147 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.049 0.951 34 H 0.102 0.898 35 H 0.079 0.921 36 H 0.042 0.958 37 H 0.098 0.902 38 H 0.047 0.953 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.007 0.993 44 H 0.007 0.993 45 H 0.072 0.928 46 H 0.082 0.918 47 H 0.086 0.914 48 H 0.080 0.920 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.184 5.240 25.619 26.658 hybrid contribution 0.423 0.776 -1.314 1.584 sum -4.761 6.016 24.304 25.487 Atomic orbital electron populations 1.21815 0.95842 1.01523 1.01870 1.21651 0.95937 0.96468 1.01913 1.21140 0.95340 0.96230 0.97497 1.21559 1.00611 0.98737 0.93898 1.21658 0.93851 1.01379 0.98342 1.21670 0.95104 0.94744 0.90504 1.62038 1.10791 1.52547 1.01860 1.22479 0.87286 1.00118 1.02936 1.22085 1.01056 0.94859 0.88459 1.21482 1.00448 0.98849 0.93196 1.21398 0.99934 0.98356 0.93747 1.19004 0.94530 0.94446 0.93276 1.21743 1.38995 1.04972 0.92601 0.92208 1.26031 0.95036 0.95462 1.03518 1.70105 1.43374 1.16050 1.27978 0.85424 0.79009 0.78175 0.78310 1.19691 1.20625 1.18653 1.21633 1.00321 1.00026 0.92826 1.21542 0.95016 1.00407 0.97723 0.93031 0.92869 0.92274 0.91839 0.92252 0.90423 0.91115 0.92094 0.92805 0.91474 0.95100 0.89818 0.92100 0.95761 0.90237 0.95341 0.92997 0.92793 0.93081 0.93334 0.99343 0.99270 0.92751 0.91798 0.91416 0.91962 0.90808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.67 71.98 0.70 -1.39 16 2 C -0.12 -1.76 4.70 30.60 0.14 -1.62 16 3 C -0.08 -1.14 2.66 -10.79 -0.03 -1.17 16 4 C -0.11 -1.74 5.21 30.59 0.16 -1.58 16 5 C -0.11 -2.32 4.73 30.60 0.14 -2.18 16 6 C 0.09 1.86 1.94 44.92 0.09 1.95 16 7 N -0.55 -14.23 4.63 -897.04 -4.15 -18.38 16 8 C 0.02 0.47 8.91 127.69 1.14 1.61 16 9 C 0.06 1.85 4.77 86.30 0.41 2.26 16 10 C -0.10 -3.67 5.14 30.59 0.16 -3.52 16 11 C -0.10 -4.13 5.15 30.59 0.16 -3.98 16 12 C 0.02 1.36 4.97 29.85 0.15 1.50 16 13 C -0.55 -32.16 9.11 25.60 0.23 -31.93 16 14 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 15 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 16 N -0.93 -58.51 13.29 21.45 0.28 -58.23 16 17 Si 0.97 45.20 29.54 68.60 2.03 47.23 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 20 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 21 C -0.11 -1.93 4.57 30.60 0.14 -1.79 16 22 C -0.11 -1.51 5.45 30.59 0.17 -1.34 16 23 H 0.05 0.69 8.14 -2.39 -0.02 0.68 16 24 H 0.05 0.76 6.57 -2.39 -0.02 0.75 16 25 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.06 1.04 4.83 -2.39 -0.01 1.03 16 28 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.07 1.05 6.57 -2.39 -0.02 1.04 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.05 1.19 6.20 -2.38 -0.01 1.18 16 32 H 0.07 1.48 6.32 -2.39 -0.02 1.46 16 33 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.08 1.69 6.24 -2.39 -0.01 1.67 16 35 H 0.06 1.61 6.30 -2.39 -0.02 1.59 16 36 H 0.02 0.55 8.14 -2.38 -0.02 0.53 16 37 H 0.08 2.27 5.83 -2.39 -0.01 2.26 16 38 H 0.03 0.83 8.12 -2.39 -0.02 0.81 16 39 H 0.05 1.90 6.47 -2.39 -0.02 1.88 16 40 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 43 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 44 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 45 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 46 H 0.06 1.08 6.35 -2.39 -0.02 1.06 16 47 H 0.07 1.29 6.54 -2.39 -0.02 1.27 16 48 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -64.45 357.58 3.25 -61.20 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 0.87 Total: 11.05 kcal Atomic # 6 Polarization: -47.09 SS G_CDS: 4.22 Total: -42.87 kcal Atomic # 7 Polarization: -72.74 SS G_CDS: -3.87 Total: -76.61 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -64.45 3.25 -61.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395357152.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.649 kcal (2) G-P(sol) polarization free energy of solvation -64.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds