Wall clock time and date at job start Mon Mar 30 2020 08:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 113.99907 * 2 1 4 4 H 1.09001 * 109.47255 * 329.99977 * 3 2 1 5 5 C 1.52997 * 109.47356 * 89.99957 * 3 2 1 6 6 C 1.53002 * 109.47415 * 60.00092 * 5 3 2 7 7 C 1.52996 * 109.46972 * 59.99860 * 6 5 3 8 8 C 1.52997 * 109.47165 * 300.00293 * 7 6 5 9 9 C 1.52999 * 109.47592 * 60.00300 * 8 7 6 10 10 H 1.09000 * 109.47160 * 59.99666 * 9 8 7 11 11 N 1.46899 * 109.47571 * 180.02562 * 9 8 7 12 12 C 1.46849 * 110.99963 * 170.78833 * 11 9 8 13 13 C 1.53036 * 109.52140 * 185.83806 * 12 11 9 14 14 C 1.53116 * 109.27889 * 300.82283 * 13 12 11 15 15 C 1.50701 * 109.57570 * 177.59038 * 14 13 12 16 16 H 1.07998 * 120.00354 * 240.28439 * 15 14 13 17 17 C 1.37878 * 119.99797 * 60.28346 * 15 14 13 18 18 N 1.31512 * 120.00194 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99694 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47533 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46920 * 120.00447 * 19 17 15 22 22 H 1.48504 * 109.47007 * 239.99831 * 19 17 15 23 23 C 1.53121 * 109.16290 * 57.65469 * 14 13 12 24 24 C 1.46841 * 110.99949 * 294.99967 * 11 9 8 25 25 H 1.08999 * 109.47072 * 299.99893 * 1 2 3 26 26 H 1.08995 * 109.47291 * 60.00199 * 1 2 3 27 27 H 1.09006 * 109.46928 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47140 * 180.02562 * 5 3 2 29 29 H 1.09001 * 109.47230 * 299.99260 * 5 3 2 30 30 H 1.08992 * 109.46974 * 180.02562 * 6 5 3 31 31 H 1.08996 * 109.46550 * 300.00288 * 6 5 3 32 32 H 1.09000 * 109.47054 * 60.00300 * 7 6 5 33 33 H 1.09001 * 109.46997 * 180.02562 * 7 6 5 34 34 H 1.09000 * 109.47140 * 299.99954 * 8 7 6 35 35 H 1.09002 * 109.47045 * 180.02562 * 8 7 6 36 36 H 1.08999 * 109.45952 * 305.85500 * 12 11 9 37 37 H 1.08995 * 109.45846 * 65.82318 * 12 11 9 38 38 H 1.08995 * 109.50272 * 180.88139 * 13 12 11 39 39 H 1.09000 * 109.50389 * 60.76052 * 13 12 11 40 40 H 1.09000 * 109.52627 * 297.74730 * 14 13 12 41 41 H 0.96998 * 119.99827 * 180.02562 * 18 17 15 42 42 H 1.08998 * 109.50040 * 182.40375 * 23 14 13 43 43 H 1.09001 * 109.50234 * 62.28672 * 23 14 13 44 44 H 1.09000 * 109.46456 * 294.17758 * 24 11 9 45 45 H 1.09000 * 109.46581 * 54.14825 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9993 -0.5138 5 6 2.2176 1.7714 1.4424 6 6 3.1515 0.7974 2.1638 7 6 4.5001 0.7553 1.4425 8 6 4.2927 0.2893 0.0001 9 6 3.3589 1.2632 -0.7213 10 1 3.8022 2.2590 -0.7213 11 7 3.1592 0.8155 -2.1061 12 6 2.1036 1.5957 -2.7644 13 6 1.8228 1.0094 -4.1498 14 6 3.1063 1.0463 -4.9840 15 6 2.8525 0.4164 -6.3293 16 1 3.4166 -0.4527 -6.6337 17 6 1.8999 0.9497 -7.1715 18 7 1.2133 2.0084 -6.8010 19 14 1.5848 0.1685 -8.8388 20 1 2.4813 -1.0022 -9.0143 21 1 0.1700 -0.2758 -8.9177 22 1 1.8520 1.1622 -9.9095 23 6 4.2034 0.2674 -4.2531 24 6 4.4151 0.8752 -2.8647 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 2.6605 2.7673 1.4424 29 1 1.2568 1.8016 1.9563 30 1 3.2988 1.1292 3.1915 31 1 2.7081 -0.1983 2.1638 32 1 4.9434 1.7510 1.4425 33 1 5.1652 0.0611 1.9562 34 1 3.8494 -0.7065 0.0001 35 1 5.2536 0.2588 -0.5136 36 1 1.1953 1.5576 -2.1630 37 1 2.4279 2.6312 -2.8671 38 1 1.0503 1.5981 -4.6444 39 1 1.4854 -0.0220 -4.0470 40 1 3.4228 2.0805 -5.1199 41 1 0.5429 2.3833 -7.3934 42 1 5.1316 0.3261 -4.8215 43 1 3.9033 -0.7756 -4.1519 44 1 4.7286 1.9141 -2.9670 45 1 5.1857 0.3139 -2.3363 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397159054.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:26:36 Heat of formation + Delta-G solvation = -61.175496 kcal Electronic energy + Delta-G solvation = -22165.664922 eV Core-core repulsion = 19182.141568 eV Total energy + Delta-G solvation = -2983.523354 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.82674 -37.40194 -35.78066 -33.65141 -31.41536 -30.54784 -29.41577 -28.53745 -26.24172 -25.25697 -23.07639 -22.52491 -21.09080 -20.85086 -19.41913 -18.50435 -16.67320 -16.07514 -15.77847 -15.36878 -14.93700 -14.47479 -14.07812 -13.84541 -13.67606 -13.30440 -12.96762 -12.80514 -12.50212 -12.32659 -12.23063 -12.03863 -11.69168 -11.28441 -11.22586 -11.05902 -10.93331 -10.81654 -10.51229 -10.39211 -10.28709 -10.14145 -9.97974 -9.79760 -9.33290 -9.21327 -8.84373 -8.61225 -8.24576 -7.58771 -5.93019 -3.97735 3.32972 3.40942 3.45558 3.97978 4.36341 4.49171 4.74276 4.88674 5.01901 5.25308 5.34778 5.35850 5.37991 5.48676 5.53831 5.54970 5.61941 5.74423 5.78807 5.83720 5.90591 5.91286 5.98186 6.12933 6.16904 6.22207 6.25379 6.30202 6.31205 6.45217 6.63368 6.68833 6.71537 6.94014 7.16571 7.25699 7.43992 7.52779 7.71337 7.81880 7.92100 8.12073 8.21893 8.54216 9.06318 9.66390 11.13233 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.032117 B = 0.004896 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.596372 B = 5717.645343 C = 6191.223256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.359 6.359 3 C 0.094 3.906 4 H 0.062 0.938 5 C -0.141 4.141 6 C -0.112 4.112 7 C -0.117 4.117 8 C -0.107 4.107 9 C 0.089 3.911 10 H 0.040 0.960 11 N -0.520 5.520 12 C 0.056 3.944 13 C -0.101 4.101 14 C 0.048 3.952 15 C -0.507 4.507 16 H 0.054 0.946 17 C 0.060 3.940 18 N -0.893 5.893 19 Si 0.888 3.112 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.286 1.286 23 C -0.105 4.105 24 C 0.059 3.941 25 H 0.031 0.969 26 H 0.042 0.958 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.017 0.983 38 H 0.090 0.910 39 H 0.043 0.957 40 H 0.019 0.981 41 H 0.258 0.742 42 H 0.048 0.952 43 H 0.057 0.943 44 H 0.020 0.980 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.856 -0.284 16.890 16.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.277 6.277 3 C 0.036 3.964 4 H 0.080 0.920 5 C -0.179 4.179 6 C -0.149 4.149 7 C -0.155 4.155 8 C -0.144 4.144 9 C -0.019 4.019 10 H 0.058 0.942 11 N -0.245 5.245 12 C -0.071 4.071 13 C -0.140 4.140 14 C 0.029 3.971 15 C -0.545 4.545 16 H 0.073 0.927 17 C -0.140 4.140 18 N -0.533 5.533 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.212 1.212 23 C -0.143 4.143 24 C -0.069 4.069 25 H 0.049 0.951 26 H 0.060 0.940 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.036 0.964 38 H 0.108 0.892 39 H 0.062 0.938 40 H 0.037 0.963 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.038 0.962 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.677 -0.825 16.815 16.918 hybrid contribution -0.271 0.843 -0.953 1.301 sum 1.407 0.018 15.862 15.924 Atomic orbital electron populations 1.22736 0.82184 1.02363 0.99325 1.87989 1.18411 1.26539 1.94735 1.22169 0.94656 0.85535 0.94052 0.92049 1.22040 0.99971 0.99341 0.96553 1.21404 0.95446 1.00291 0.97797 1.21524 0.96937 1.00892 0.96139 1.21498 0.98693 1.00405 0.93849 1.21656 0.93918 0.96527 0.89843 0.94178 1.61958 1.07534 1.55177 0.99846 1.22327 0.93066 0.94113 0.97625 1.21622 1.01935 0.99883 0.90515 1.18683 0.90446 0.95041 0.92916 1.21268 1.19721 1.13082 1.00477 0.92725 1.24964 0.96050 0.94943 0.98082 1.69891 1.24573 1.22382 1.36432 0.86593 0.77985 0.79338 0.84412 1.19824 1.21122 1.21189 1.21662 0.99748 1.00337 0.92563 1.22164 0.90688 0.98217 0.95824 0.95056 0.93962 0.89997 0.91461 0.92005 0.92718 0.91149 0.92599 0.92090 0.90259 0.92166 0.92756 0.96438 0.89205 0.93806 0.96312 0.93253 0.93367 0.92460 0.96200 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.82 101.05 1.09 1.48 16 2 O -0.36 -5.40 8.86 -35.23 -0.31 -5.71 16 3 C 0.09 1.31 1.70 -26.73 -0.05 1.27 16 4 H 0.06 0.89 5.83 -51.93 -0.30 0.59 16 5 C -0.14 -1.58 5.63 -26.73 -0.15 -1.73 16 6 C -0.11 -1.19 5.78 -26.73 -0.15 -1.35 16 7 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 8 C -0.11 -1.45 4.97 -26.73 -0.13 -1.58 16 9 C 0.09 1.36 1.74 -67.71 -0.12 1.24 16 10 H 0.04 0.61 8.13 -51.93 -0.42 0.19 16 11 N -0.52 -9.60 4.39 -226.70 -0.99 -10.60 16 12 C 0.06 1.13 5.01 -3.83 -0.02 1.11 16 13 C -0.10 -2.45 5.12 -26.65 -0.14 -2.58 16 14 C 0.05 1.21 2.16 -91.65 -0.20 1.01 16 15 C -0.51 -14.18 8.56 -34.44 -0.29 -14.47 16 16 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 17 C 0.06 1.68 5.31 -17.82 -0.09 1.59 16 18 N -0.89 -25.73 11.37 55.43 0.63 -25.10 16 19 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 C -0.11 -2.28 5.32 -26.65 -0.14 -2.43 16 24 C 0.06 1.10 5.29 -3.84 -0.02 1.08 16 25 H 0.03 0.33 7.87 -51.93 -0.41 -0.08 16 26 H 0.04 0.56 7.58 -51.93 -0.39 0.16 16 27 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.64 7.87 -51.93 -0.41 0.23 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.82 7.68 -51.93 -0.40 0.42 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.20 7.68 -51.93 -0.40 0.81 16 35 H 0.06 0.81 6.41 -51.93 -0.33 0.48 16 36 H 0.05 1.02 5.33 -51.93 -0.28 0.74 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.09 2.40 6.18 -51.93 -0.32 2.08 16 39 H 0.04 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 1.00 6.18 -51.93 -0.32 0.68 16 LS Contribution 331.16 15.07 4.99 4.99 Total: -1.00 -28.90 331.16 -9.46 -38.35 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -8.18 Total: -1.67 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: -0.57 Total: -16.81 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: -0.36 Total: -35.70 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.31 Total: -5.71 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.90 -9.46 -38.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397159054.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.824 kcal (2) G-P(sol) polarization free energy of solvation -28.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds