Wall clock time and date at job start Mon Mar 30 2020 08:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 113.99907 * 2 1 4 4 H 1.09001 * 109.47255 * 329.99977 * 3 2 1 5 5 C 1.52997 * 109.47356 * 89.99957 * 3 2 1 6 6 C 1.53002 * 109.47415 * 60.00092 * 5 3 2 7 7 C 1.52996 * 109.46972 * 59.99860 * 6 5 3 8 8 C 1.52997 * 109.47165 * 300.00293 * 7 6 5 9 9 C 1.52999 * 109.47592 * 60.00300 * 8 7 6 10 10 H 1.09000 * 109.47160 * 59.99666 * 9 8 7 11 11 N 1.46899 * 109.47571 * 180.02562 * 9 8 7 12 12 C 1.46849 * 110.99963 * 170.78833 * 11 9 8 13 13 C 1.53036 * 109.52140 * 185.83806 * 12 11 9 14 14 C 1.53116 * 109.27889 * 300.82283 * 13 12 11 15 15 C 1.50701 * 109.57570 * 177.59038 * 14 13 12 16 16 H 1.07998 * 120.00354 * 240.28439 * 15 14 13 17 17 C 1.37878 * 119.99797 * 60.28346 * 15 14 13 18 18 N 1.31512 * 120.00194 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99694 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47533 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46920 * 120.00447 * 19 17 15 22 22 H 1.48504 * 109.47007 * 239.99831 * 19 17 15 23 23 C 1.53121 * 109.16290 * 57.65469 * 14 13 12 24 24 C 1.46841 * 110.99949 * 294.99967 * 11 9 8 25 25 H 1.08999 * 109.47072 * 299.99893 * 1 2 3 26 26 H 1.08995 * 109.47291 * 60.00199 * 1 2 3 27 27 H 1.09006 * 109.46928 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47140 * 180.02562 * 5 3 2 29 29 H 1.09001 * 109.47230 * 299.99260 * 5 3 2 30 30 H 1.08992 * 109.46974 * 180.02562 * 6 5 3 31 31 H 1.08996 * 109.46550 * 300.00288 * 6 5 3 32 32 H 1.09000 * 109.47054 * 60.00300 * 7 6 5 33 33 H 1.09001 * 109.46997 * 180.02562 * 7 6 5 34 34 H 1.09000 * 109.47140 * 299.99954 * 8 7 6 35 35 H 1.09002 * 109.47045 * 180.02562 * 8 7 6 36 36 H 1.08999 * 109.45952 * 305.85500 * 12 11 9 37 37 H 1.08995 * 109.45846 * 65.82318 * 12 11 9 38 38 H 1.08995 * 109.50272 * 180.88139 * 13 12 11 39 39 H 1.09000 * 109.50389 * 60.76052 * 13 12 11 40 40 H 1.09000 * 109.52627 * 297.74730 * 14 13 12 41 41 H 0.96998 * 119.99827 * 180.02562 * 18 17 15 42 42 H 1.08998 * 109.50040 * 182.40375 * 23 14 13 43 43 H 1.09001 * 109.50234 * 62.28672 * 23 14 13 44 44 H 1.09000 * 109.46456 * 294.17758 * 24 11 9 45 45 H 1.09000 * 109.46581 * 54.14825 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9993 -0.5138 5 6 2.2176 1.7714 1.4424 6 6 3.1515 0.7974 2.1638 7 6 4.5001 0.7553 1.4425 8 6 4.2927 0.2893 0.0001 9 6 3.3589 1.2632 -0.7213 10 1 3.8022 2.2590 -0.7213 11 7 3.1592 0.8155 -2.1061 12 6 2.1036 1.5957 -2.7644 13 6 1.8228 1.0094 -4.1498 14 6 3.1063 1.0463 -4.9840 15 6 2.8525 0.4164 -6.3293 16 1 3.4166 -0.4527 -6.6337 17 6 1.8999 0.9497 -7.1715 18 7 1.2133 2.0084 -6.8010 19 14 1.5848 0.1685 -8.8388 20 1 2.4813 -1.0022 -9.0143 21 1 0.1700 -0.2758 -8.9177 22 1 1.8520 1.1622 -9.9095 23 6 4.2034 0.2674 -4.2531 24 6 4.4151 0.8752 -2.8647 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 2.6605 2.7673 1.4424 29 1 1.2568 1.8016 1.9563 30 1 3.2988 1.1292 3.1915 31 1 2.7081 -0.1983 2.1638 32 1 4.9434 1.7510 1.4425 33 1 5.1652 0.0611 1.9562 34 1 3.8494 -0.7065 0.0001 35 1 5.2536 0.2588 -0.5136 36 1 1.1953 1.5576 -2.1630 37 1 2.4279 2.6312 -2.8671 38 1 1.0503 1.5981 -4.6444 39 1 1.4854 -0.0220 -4.0470 40 1 3.4228 2.0805 -5.1199 41 1 0.5429 2.3833 -7.3934 42 1 5.1316 0.3261 -4.8215 43 1 3.9033 -0.7756 -4.1519 44 1 4.7286 1.9141 -2.9670 45 1 5.1857 0.3139 -2.3363 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397159054.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:26:35 Heat of formation + Delta-G solvation = -77.947994 kcal Electronic energy + Delta-G solvation = -22166.392232 eV Core-core repulsion = 19182.141568 eV Total energy + Delta-G solvation = -2984.250664 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.04366 -38.90059 -36.88414 -35.42163 -33.22680 -31.89055 -30.77904 -29.92260 -27.45263 -26.95769 -24.44666 -24.10198 -22.46261 -22.17010 -20.50079 -20.30817 -18.50136 -17.57394 -16.93259 -16.62719 -16.40282 -16.01440 -15.48868 -15.10243 -14.92829 -14.71322 -14.35398 -14.27188 -14.14321 -13.91027 -13.44951 -13.28402 -12.95849 -12.83914 -12.77087 -12.55371 -12.25247 -12.20381 -12.04304 -12.00346 -11.88926 -11.46409 -11.40137 -11.31684 -11.00374 -10.71735 -10.49196 -10.36725 -10.25903 -9.08635 -8.08152 -6.21357 1.39358 1.41143 1.52876 2.43709 2.89510 3.03604 3.18764 3.72078 3.91901 3.99564 4.24454 4.26108 4.29235 4.31192 4.41009 4.45003 4.47968 4.51335 4.58152 4.62886 4.65059 4.76204 4.82640 4.88944 4.93131 4.96197 4.97873 5.00879 5.13332 5.21414 5.29126 5.31338 5.32882 5.36296 5.42101 5.57155 5.62408 5.64647 6.00808 6.03882 6.32119 6.35676 6.41048 6.49220 6.90132 7.46313 8.96748 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.032117 B = 0.004896 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.596372 B = 5717.645343 C = 6191.223256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.379 6.379 3 C 0.092 3.908 4 H 0.051 0.949 5 C -0.136 4.136 6 C -0.109 4.109 7 C -0.112 4.112 8 C -0.101 4.101 9 C 0.086 3.914 10 H 0.045 0.955 11 N -0.529 5.529 12 C 0.070 3.930 13 C -0.090 4.090 14 C 0.045 3.955 15 C -0.532 4.532 16 H 0.050 0.950 17 C 0.012 3.988 18 N -0.918 5.918 19 Si 0.953 3.047 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.098 4.098 24 C 0.065 3.935 25 H 0.053 0.947 26 H 0.028 0.972 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.010 0.990 38 H 0.059 0.941 39 H 0.026 0.974 40 H -0.013 1.013 41 H 0.260 0.740 42 H 0.053 0.947 43 H 0.048 0.952 44 H 0.018 0.982 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.432 -0.528 18.603 18.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.298 6.298 3 C 0.034 3.966 4 H 0.069 0.931 5 C -0.174 4.174 6 C -0.147 4.147 7 C -0.150 4.150 8 C -0.139 4.139 9 C -0.023 4.023 10 H 0.063 0.937 11 N -0.253 5.253 12 C -0.057 4.057 13 C -0.129 4.129 14 C 0.026 3.974 15 C -0.570 4.570 16 H 0.068 0.932 17 C -0.186 4.186 18 N -0.558 5.558 19 Si 0.779 3.221 20 H -0.193 1.193 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.136 4.136 24 C -0.062 4.062 25 H 0.072 0.928 26 H 0.047 0.953 27 H 0.109 0.891 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.028 0.972 38 H 0.078 0.922 39 H 0.045 0.955 40 H 0.005 0.995 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.036 0.964 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.261 -1.071 18.543 18.711 hybrid contribution -0.463 0.917 -1.493 1.812 sum 1.798 -0.154 17.050 17.145 Atomic orbital electron populations 1.22837 0.81103 1.03149 0.99729 1.87953 1.19671 1.27214 1.94952 1.22215 0.93577 0.85036 0.95773 0.93150 1.22014 1.00973 0.99901 0.94488 1.21393 0.94878 0.99540 0.98848 1.21510 0.97560 1.01738 0.94205 1.21453 0.97892 0.98960 0.95601 1.21825 0.95487 0.97167 0.87778 0.93687 1.61918 1.06892 1.55105 1.01428 1.22050 0.94586 0.93403 0.95694 1.21365 1.00432 0.98386 0.92680 1.18654 0.92220 0.93508 0.92999 1.21615 1.20105 1.13267 1.02020 0.93194 1.25737 0.95759 0.95414 1.01668 1.70025 1.24838 1.23353 1.37625 0.85578 0.77927 0.78597 0.79985 1.19257 1.20599 1.20557 1.21528 0.98479 0.99314 0.94285 1.22083 0.91562 0.98229 0.94360 0.92815 0.95324 0.89123 0.90353 0.90883 0.90525 0.92306 0.91553 0.90649 0.92052 0.92049 0.91396 0.97218 0.92215 0.95473 0.99467 0.93111 0.92878 0.93305 0.96351 0.89414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.82 113.37 1.23 1.90 16 2 O -0.38 -10.99 8.86 -148.98 -1.32 -12.31 16 3 C 0.09 2.43 1.70 30.60 0.05 2.48 16 4 H 0.05 1.42 5.83 -2.39 -0.01 1.40 16 5 C -0.14 -2.66 5.63 30.59 0.17 -2.49 16 6 C -0.11 -1.98 5.78 30.59 0.18 -1.80 16 7 C -0.11 -2.10 5.92 30.59 0.18 -1.92 16 8 C -0.10 -2.53 4.97 30.59 0.15 -2.38 16 9 C 0.09 2.47 1.74 44.92 0.08 2.55 16 10 H 0.05 1.28 8.13 -2.39 -0.02 1.26 16 11 N -0.53 -19.26 4.39 -871.13 -3.82 -23.08 16 12 C 0.07 2.88 5.01 86.33 0.43 3.31 16 13 C -0.09 -4.52 5.12 30.65 0.16 -4.37 16 14 C 0.04 2.35 2.16 -11.46 -0.02 2.33 16 15 C -0.53 -30.52 8.56 25.60 0.22 -30.30 16 16 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 17 C 0.01 0.71 5.31 84.66 0.45 1.16 16 18 N -0.92 -54.28 11.37 21.45 0.24 -54.03 16 19 Si 0.95 44.76 29.54 68.60 2.03 46.78 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 23 C -0.10 -4.30 5.32 30.65 0.16 -4.14 16 24 C 0.07 2.39 5.29 86.33 0.46 2.84 16 25 H 0.05 1.03 7.87 -2.39 -0.02 1.01 16 26 H 0.03 0.75 7.58 -2.39 -0.02 0.73 16 27 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 28 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.07 1.28 7.87 -2.39 -0.02 1.26 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 1.22 7.68 -2.39 -0.02 1.20 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.06 1.77 7.68 -2.39 -0.02 1.75 16 35 H 0.06 1.50 6.41 -2.39 -0.02 1.48 16 36 H 0.07 2.58 5.33 -2.39 -0.01 2.57 16 37 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.06 3.34 6.18 -2.39 -0.01 3.32 16 39 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 40 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 41 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 42 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.09 2.75 6.18 -2.39 -0.01 2.74 16 Total: -1.00 -63.17 331.16 1.95 -61.22 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 0.93 Total: 12.24 kcal Atomic # 6 Polarization: -34.71 SS G_CDS: 3.89 Total: -30.82 kcal Atomic # 7 Polarization: -73.54 SS G_CDS: -3.58 Total: -77.12 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: -1.32 Total: -12.31 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -63.17 1.95 -61.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397159054.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.728 kcal (2) G-P(sol) polarization free energy of solvation -63.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds