Wall clock time and date at job start Mon Mar 30 2020 08:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 113.99871 * 2 1 4 4 H 1.09000 * 109.47544 * 30.00090 * 3 2 1 5 5 C 1.53003 * 109.47285 * 270.00141 * 3 2 1 6 6 C 1.52998 * 109.47701 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.46767 * 59.99857 * 6 5 3 8 8 C 1.53003 * 109.47322 * 299.99973 * 7 6 5 9 9 C 1.53001 * 109.46662 * 60.00347 * 8 7 6 10 10 H 1.09000 * 109.47700 * 59.99934 * 9 8 7 11 11 N 1.46910 * 109.46925 * 180.02562 * 9 8 7 12 12 C 1.46850 * 110.99779 * 51.57312 * 11 9 8 13 13 C 1.53035 * 109.52038 * 174.16497 * 12 11 9 14 14 C 1.53121 * 109.31335 * 59.15531 * 13 12 11 15 15 C 1.50698 * 109.51949 * 182.45969 * 14 13 12 16 16 H 1.07995 * 120.00309 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99607 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00146 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00075 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46722 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47580 * 119.99806 * 19 17 15 22 22 H 1.48503 * 109.47030 * 240.00172 * 19 17 15 23 23 C 1.53119 * 109.15739 * 302.40564 * 14 13 12 24 24 C 1.46841 * 110.99697 * 287.36271 * 11 9 8 25 25 H 1.09004 * 109.47248 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47453 * 299.99804 * 1 2 3 27 27 H 1.08990 * 109.47834 * 59.99929 * 1 2 3 28 28 H 1.08997 * 109.46865 * 59.99570 * 5 3 2 29 29 H 1.09000 * 109.46788 * 300.00412 * 5 3 2 30 30 H 1.09001 * 109.46789 * 300.00574 * 6 5 3 31 31 H 1.08996 * 109.47434 * 179.97438 * 6 5 3 32 32 H 1.09002 * 109.46773 * 180.02562 * 7 6 5 33 33 H 1.09002 * 109.47284 * 60.00421 * 7 6 5 34 34 H 1.09002 * 109.47307 * 300.00435 * 8 7 6 35 35 H 1.08999 * 109.46831 * 179.97438 * 8 7 6 36 36 H 1.08999 * 109.46324 * 54.14594 * 12 11 9 37 37 H 1.08998 * 109.45252 * 294.16904 * 12 11 9 38 38 H 1.08998 * 109.50223 * 179.11991 * 13 12 11 39 39 H 1.09006 * 109.49967 * 299.19406 * 13 12 11 40 40 H 1.09000 * 109.51780 * 62.27477 * 14 13 12 41 41 H 0.96996 * 120.00080 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.47233 * 297.65122 * 23 14 13 43 43 H 1.08998 * 109.53261 * 177.57499 * 23 14 13 44 44 H 1.09002 * 109.46724 * 305.85452 * 24 11 9 45 45 H 1.09000 * 109.46403 * 65.82132 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2175 1.7714 -1.4425 6 6 2.8392 3.1694 -1.4426 7 6 4.1879 3.1278 -0.7212 8 6 3.9805 2.6620 0.7214 9 6 3.3588 1.2639 0.7213 10 1 4.0244 0.5702 0.2076 11 7 3.1591 0.8168 2.1064 12 6 2.4324 1.8272 2.8859 13 6 2.1157 1.2704 4.2758 14 6 3.4223 0.8967 4.9814 15 6 3.1129 0.2918 6.3265 16 1 2.0873 0.1838 6.6471 17 6 4.1393 -0.1237 7.1480 18 7 5.3883 0.0074 6.7575 19 14 3.7559 -0.8741 8.8152 20 1 2.2849 -0.9099 9.0153 21 1 4.2975 -2.2556 8.8726 22 1 4.3805 -0.0527 9.8832 23 6 4.1829 -0.1196 4.1251 24 6 4.4398 0.4775 2.7396 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.2567 1.8014 -1.9563 29 1 2.8828 1.0775 -1.9563 30 1 2.1736 3.8630 -0.9288 31 1 2.9874 3.5011 -2.4703 32 1 4.6306 4.1239 -0.7209 33 1 4.8535 2.4342 -1.2349 34 1 3.3148 3.3556 1.2351 35 1 4.9413 2.6319 1.2351 36 1 1.5032 2.0804 2.3756 37 1 3.0480 2.7214 2.9846 38 1 1.5902 2.0262 4.8594 39 1 1.4883 0.3844 4.1784 40 1 4.0328 1.7898 5.1143 41 1 6.1104 -0.2846 7.3355 42 1 3.5886 -1.0279 4.0254 43 1 5.1343 -0.3575 4.6009 44 1 4.9685 -0.2495 2.1231 45 1 5.0457 1.3781 2.8389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397159056.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:26:43 Heat of formation + Delta-G solvation = -64.369010 kcal Electronic energy + Delta-G solvation = -22081.901878 eV Core-core repulsion = 19098.240043 eV Total energy + Delta-G solvation = -2983.661835 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.87124 -37.43335 -36.08214 -33.66626 -31.41892 -30.05429 -29.81894 -28.41706 -26.23177 -25.27349 -22.85052 -22.49144 -21.79641 -20.92831 -19.56024 -18.18588 -16.54122 -16.38963 -15.79208 -15.06240 -14.92669 -14.52071 -14.23359 -13.92586 -13.61038 -13.40647 -13.24200 -12.85948 -12.78231 -12.28017 -12.13921 -11.98772 -11.56790 -11.38289 -11.11106 -11.06015 -10.94343 -10.81194 -10.63454 -10.58989 -10.39672 -10.23477 -10.02876 -9.84629 -9.35875 -9.24373 -8.85734 -8.63415 -8.23758 -7.53101 -5.92268 -3.97157 3.33562 3.41550 3.45797 3.89552 4.36482 4.49730 4.70529 4.90077 4.97936 5.13293 5.20566 5.29698 5.38038 5.40210 5.44381 5.50474 5.54590 5.66054 5.73823 5.82596 5.86132 5.91831 5.98181 6.03697 6.07775 6.11247 6.13381 6.24457 6.32855 6.38587 6.46347 6.69467 6.70578 6.93200 7.15595 7.26540 7.43594 7.53729 7.71385 7.82380 7.92021 8.12597 8.23249 8.54765 9.06777 9.66976 11.13956 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.030733 B = 0.004839 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.861641 B = 5784.651212 C = 6263.741168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.365 6.365 3 C 0.102 3.898 4 H 0.058 0.942 5 C -0.141 4.141 6 C -0.116 4.116 7 C -0.116 4.116 8 C -0.152 4.152 9 C 0.089 3.911 10 H 0.082 0.918 11 N -0.519 5.519 12 C 0.058 3.942 13 C -0.106 4.106 14 C 0.049 3.951 15 C -0.508 4.508 16 H 0.054 0.946 17 C 0.060 3.940 18 N -0.892 5.892 19 Si 0.888 3.112 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.286 1.286 23 C -0.103 4.103 24 C 0.058 3.942 25 H 0.081 0.919 26 H 0.040 0.960 27 H 0.031 0.969 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.026 0.974 38 H 0.046 0.954 39 H 0.055 0.945 40 H 0.019 0.981 41 H 0.258 0.742 42 H 0.043 0.957 43 H 0.091 0.909 44 H 0.054 0.946 45 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.155 5.248 -16.211 17.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.283 6.283 3 C 0.043 3.957 4 H 0.076 0.924 5 C -0.179 4.179 6 C -0.154 4.154 7 C -0.155 4.155 8 C -0.191 4.191 9 C -0.021 4.021 10 H 0.100 0.900 11 N -0.242 5.242 12 C -0.070 4.070 13 C -0.143 4.143 14 C 0.030 3.970 15 C -0.546 4.546 16 H 0.072 0.928 17 C -0.140 4.140 18 N -0.532 5.532 19 Si 0.717 3.283 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.212 1.212 23 C -0.142 4.142 24 C -0.069 4.069 25 H 0.100 0.900 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.044 0.956 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.037 0.963 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.109 0.891 44 H 0.072 0.928 45 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -5.155 4.597 -16.127 17.544 hybrid contribution 0.153 0.567 0.913 1.086 sum -5.001 5.164 -15.215 16.828 Atomic orbital electron populations 1.22699 0.82078 1.02301 0.99179 1.87981 1.18599 1.27007 1.94751 1.22106 0.94775 0.84896 0.93879 0.92425 1.22052 1.01130 0.97070 0.97637 1.21494 0.96949 0.96585 1.00340 1.21511 0.97050 1.01118 0.95780 1.22243 1.01835 0.98157 0.96899 1.21750 0.94801 0.94447 0.91081 0.90007 1.62129 1.21233 1.40858 0.99937 1.22160 0.96440 0.92815 0.95591 1.21669 1.00617 0.99497 0.92561 1.18670 0.90656 0.94685 0.92955 1.21257 0.92652 1.39824 1.00897 0.92776 1.24964 0.95118 0.95914 0.98020 1.69891 0.98448 1.48140 1.36707 0.86595 0.78400 0.78926 0.84419 1.19859 1.21092 1.21195 1.21646 1.03212 0.98712 0.90580 1.22264 0.88618 0.98212 0.97778 0.90031 0.94154 0.95073 0.92041 0.91143 0.92085 0.91898 0.92071 0.91881 0.91421 0.91156 0.93014 0.95573 0.93490 0.92576 0.96290 0.93224 0.93830 0.89092 0.92772 0.95983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.82 101.05 1.09 1.51 16 2 O -0.37 -5.59 10.21 -35.23 -0.36 -5.95 16 3 C 0.10 1.39 1.92 -26.73 -0.05 1.33 16 4 H 0.06 0.79 6.16 -51.93 -0.32 0.47 16 5 C -0.14 -1.54 5.54 -26.73 -0.15 -1.68 16 6 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 7 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 8 C -0.15 -2.02 4.42 -26.73 -0.12 -2.13 16 9 C 0.09 1.34 1.87 -67.71 -0.13 1.21 16 10 H 0.08 1.28 7.94 -51.93 -0.41 0.87 16 11 N -0.52 -9.53 4.45 -226.69 -1.01 -10.54 16 12 C 0.06 1.06 4.48 -3.83 -0.02 1.04 16 13 C -0.11 -2.28 5.32 -26.65 -0.14 -2.42 16 14 C 0.05 1.24 2.16 -91.65 -0.20 1.04 16 15 C -0.51 -14.20 8.56 -34.44 -0.29 -14.49 16 16 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.69 5.31 -17.82 -0.09 1.60 16 18 N -0.89 -25.76 11.38 55.43 0.63 -25.12 16 19 Si 0.89 21.60 29.54 -169.99 -5.02 16.57 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 C -0.10 -2.50 5.12 -26.65 -0.14 -2.64 16 24 C 0.06 1.18 5.17 -3.84 -0.02 1.16 16 25 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.04 0.49 8.09 -51.93 -0.42 0.07 16 27 H 0.03 0.31 7.87 -51.93 -0.41 -0.10 16 28 H 0.06 0.61 7.87 -51.93 -0.41 0.20 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.92 6.44 -51.93 -0.33 0.59 16 35 H 0.07 1.01 6.92 -51.93 -0.36 0.65 16 36 H 0.05 0.86 6.33 -51.93 -0.33 0.53 16 37 H 0.03 0.48 6.57 -51.93 -0.34 0.14 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.04 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.09 2.44 6.18 -51.93 -0.32 2.12 16 44 H 0.05 1.03 7.99 -51.93 -0.41 0.62 16 45 H 0.02 0.45 6.97 -51.93 -0.36 0.09 16 LS Contribution 332.22 15.07 5.01 5.01 Total: -1.00 -29.09 332.22 -9.52 -38.62 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -8.20 Total: -1.43 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: -0.57 Total: -17.15 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: -0.38 Total: -35.67 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: -0.36 Total: -5.95 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.09 -9.52 -38.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397159056.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.752 kcal (2) G-P(sol) polarization free energy of solvation -29.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds