Wall clock time and date at job start Mon Mar 30 2020 08:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 113.99871 * 2 1 4 4 H 1.09000 * 109.47544 * 30.00090 * 3 2 1 5 5 C 1.53003 * 109.47285 * 270.00141 * 3 2 1 6 6 C 1.52998 * 109.47701 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.46767 * 59.99857 * 6 5 3 8 8 C 1.53003 * 109.47322 * 299.99973 * 7 6 5 9 9 C 1.53001 * 109.46662 * 60.00347 * 8 7 6 10 10 H 1.09000 * 109.47700 * 59.99934 * 9 8 7 11 11 N 1.46910 * 109.46925 * 180.02562 * 9 8 7 12 12 C 1.46850 * 110.99779 * 51.57312 * 11 9 8 13 13 C 1.53035 * 109.52038 * 174.16497 * 12 11 9 14 14 C 1.53121 * 109.31335 * 59.15531 * 13 12 11 15 15 C 1.50698 * 109.51949 * 182.45969 * 14 13 12 16 16 H 1.07995 * 120.00309 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99607 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00146 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00075 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46722 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47580 * 119.99806 * 19 17 15 22 22 H 1.48503 * 109.47030 * 240.00172 * 19 17 15 23 23 C 1.53119 * 109.15739 * 302.40564 * 14 13 12 24 24 C 1.46841 * 110.99697 * 287.36271 * 11 9 8 25 25 H 1.09004 * 109.47248 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47453 * 299.99804 * 1 2 3 27 27 H 1.08990 * 109.47834 * 59.99929 * 1 2 3 28 28 H 1.08997 * 109.46865 * 59.99570 * 5 3 2 29 29 H 1.09000 * 109.46788 * 300.00412 * 5 3 2 30 30 H 1.09001 * 109.46789 * 300.00574 * 6 5 3 31 31 H 1.08996 * 109.47434 * 179.97438 * 6 5 3 32 32 H 1.09002 * 109.46773 * 180.02562 * 7 6 5 33 33 H 1.09002 * 109.47284 * 60.00421 * 7 6 5 34 34 H 1.09002 * 109.47307 * 300.00435 * 8 7 6 35 35 H 1.08999 * 109.46831 * 179.97438 * 8 7 6 36 36 H 1.08999 * 109.46324 * 54.14594 * 12 11 9 37 37 H 1.08998 * 109.45252 * 294.16904 * 12 11 9 38 38 H 1.08998 * 109.50223 * 179.11991 * 13 12 11 39 39 H 1.09006 * 109.49967 * 299.19406 * 13 12 11 40 40 H 1.09000 * 109.51780 * 62.27477 * 14 13 12 41 41 H 0.96996 * 120.00080 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.47233 * 297.65122 * 23 14 13 43 43 H 1.08998 * 109.53261 * 177.57499 * 23 14 13 44 44 H 1.09002 * 109.46724 * 305.85452 * 24 11 9 45 45 H 1.09000 * 109.46403 * 65.82132 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2175 1.7714 -1.4425 6 6 2.8392 3.1694 -1.4426 7 6 4.1879 3.1278 -0.7212 8 6 3.9805 2.6620 0.7214 9 6 3.3588 1.2639 0.7213 10 1 4.0244 0.5702 0.2076 11 7 3.1591 0.8168 2.1064 12 6 2.4324 1.8272 2.8859 13 6 2.1157 1.2704 4.2758 14 6 3.4223 0.8967 4.9814 15 6 3.1129 0.2918 6.3265 16 1 2.0873 0.1838 6.6471 17 6 4.1393 -0.1237 7.1480 18 7 5.3883 0.0074 6.7575 19 14 3.7559 -0.8741 8.8152 20 1 2.2849 -0.9099 9.0153 21 1 4.2975 -2.2556 8.8726 22 1 4.3805 -0.0527 9.8832 23 6 4.1829 -0.1196 4.1251 24 6 4.4398 0.4775 2.7396 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.2567 1.8014 -1.9563 29 1 2.8828 1.0775 -1.9563 30 1 2.1736 3.8630 -0.9288 31 1 2.9874 3.5011 -2.4703 32 1 4.6306 4.1239 -0.7209 33 1 4.8535 2.4342 -1.2349 34 1 3.3148 3.3556 1.2351 35 1 4.9413 2.6319 1.2351 36 1 1.5032 2.0804 2.3756 37 1 3.0480 2.7214 2.9846 38 1 1.5902 2.0262 4.8594 39 1 1.4883 0.3844 4.1784 40 1 4.0328 1.7898 5.1143 41 1 6.1104 -0.2846 7.3355 42 1 3.5886 -1.0279 4.0254 43 1 5.1343 -0.3575 4.6009 44 1 4.9685 -0.2495 2.1231 45 1 5.0457 1.3781 2.8389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397159056.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:26:42 Heat of formation + Delta-G solvation = -81.600865 kcal Electronic energy + Delta-G solvation = -22082.649107 eV Core-core repulsion = 19098.240043 eV Total energy + Delta-G solvation = -2984.409064 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.09313 -38.85495 -37.19526 -35.41609 -33.23052 -31.54626 -30.98956 -29.80583 -27.42929 -26.90327 -24.38198 -23.92941 -23.07848 -22.20533 -20.84664 -19.82165 -18.45233 -17.60047 -17.11820 -16.51961 -16.15194 -15.99905 -15.56108 -15.11151 -14.94445 -14.73209 -14.54501 -14.35759 -14.10574 -13.91786 -13.61150 -13.20915 -13.02934 -12.86541 -12.59950 -12.54533 -12.30805 -12.20278 -12.07895 -11.94862 -11.74707 -11.56815 -11.51823 -11.30699 -11.22606 -10.72125 -10.65504 -10.39068 -10.22503 -8.99712 -8.07601 -6.20891 1.39613 1.41433 1.52932 2.44017 2.89595 3.02509 3.19315 3.74518 3.93182 4.05481 4.13558 4.17215 4.24513 4.34623 4.34931 4.39999 4.46117 4.53704 4.56208 4.62147 4.63781 4.73244 4.85911 4.88959 4.90750 4.93446 4.97934 5.07249 5.11548 5.13865 5.19044 5.23934 5.26032 5.32105 5.36649 5.48241 5.57879 5.64460 6.01247 6.04785 6.34333 6.36130 6.41951 6.50739 6.90691 7.46783 8.97239 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.030733 B = 0.004839 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.861641 B = 5784.651212 C = 6263.741168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.395 6.395 3 C 0.103 3.897 4 H 0.058 0.942 5 C -0.134 4.134 6 C -0.112 4.112 7 C -0.112 4.112 8 C -0.147 4.147 9 C 0.087 3.913 10 H 0.075 0.925 11 N -0.529 5.529 12 C 0.068 3.932 13 C -0.099 4.099 14 C 0.047 3.953 15 C -0.532 4.532 16 H 0.049 0.951 17 C 0.012 3.988 18 N -0.918 5.918 19 Si 0.953 3.047 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.280 1.280 23 C -0.093 4.093 24 C 0.071 3.929 25 H 0.088 0.912 26 H 0.035 0.965 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.027 0.973 38 H 0.052 0.948 39 H 0.046 0.954 40 H -0.011 1.011 41 H 0.260 0.740 42 H 0.025 0.975 43 H 0.060 0.940 44 H 0.064 0.936 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.213 6.022 -17.776 19.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.314 6.314 3 C 0.045 3.955 4 H 0.076 0.924 5 C -0.172 4.172 6 C -0.149 4.149 7 C -0.150 4.150 8 C -0.186 4.186 9 C -0.021 4.021 10 H 0.093 0.907 11 N -0.252 5.252 12 C -0.060 4.060 13 C -0.136 4.136 14 C 0.028 3.972 15 C -0.570 4.570 16 H 0.068 0.932 17 C -0.186 4.186 18 N -0.558 5.558 19 Si 0.779 3.221 20 H -0.193 1.193 21 H -0.206 1.206 22 H -0.205 1.205 23 C -0.132 4.132 24 C -0.056 4.056 25 H 0.106 0.894 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.046 0.954 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.007 0.993 41 H 0.069 0.931 42 H 0.044 0.956 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -6.225 5.380 -17.708 19.526 hybrid contribution 0.480 0.306 1.403 1.514 sum -5.745 5.685 -16.305 18.198 Atomic orbital electron populations 1.22836 0.80572 1.03130 1.00053 1.87937 1.20377 1.28060 1.95021 1.22150 0.93442 0.84458 0.95483 0.92419 1.22002 1.02033 0.97642 0.95530 1.21492 0.96089 0.95817 1.01524 1.21498 0.98028 1.01791 0.93725 1.22169 1.00680 0.96874 0.98906 1.21856 0.96254 0.95291 0.88732 0.90667 1.62060 1.19984 1.41638 1.01524 1.22034 0.97578 0.92460 0.93912 1.21534 0.98338 0.99353 0.94419 1.18627 0.92176 0.93434 0.92927 1.21611 0.92575 1.40427 1.02436 0.93237 1.25737 0.94956 0.96278 1.01612 1.70025 0.99211 1.48634 1.37919 0.85582 0.78412 0.78094 0.80023 1.19256 1.20648 1.20533 1.21404 1.01009 0.97950 0.92811 1.21989 0.89835 0.98049 0.95750 0.89382 0.94623 0.92757 0.90565 0.91419 0.91619 0.89738 0.90727 0.91601 0.91633 0.92730 0.90530 0.95440 0.92963 0.93558 0.99301 0.93103 0.95583 0.92118 0.91775 0.96301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.82 113.37 1.23 1.90 16 2 O -0.40 -11.45 10.21 -148.98 -1.52 -12.97 16 3 C 0.10 2.58 1.92 30.60 0.06 2.64 16 4 H 0.06 1.43 6.16 -2.39 -0.01 1.42 16 5 C -0.13 -2.51 5.54 30.59 0.17 -2.34 16 6 C -0.11 -1.75 5.92 30.59 0.18 -1.57 16 7 C -0.11 -2.06 5.92 30.60 0.18 -1.88 16 8 C -0.15 -3.68 4.42 30.60 0.14 -3.54 16 9 C 0.09 2.53 1.87 44.91 0.08 2.61 16 10 H 0.08 2.28 7.94 -2.39 -0.02 2.26 16 11 N -0.53 -19.26 4.45 -871.10 -3.88 -23.14 16 12 C 0.07 2.44 4.48 86.32 0.39 2.83 16 13 C -0.10 -4.30 5.32 30.65 0.16 -4.13 16 14 C 0.05 2.46 2.16 -11.46 -0.02 2.43 16 15 C -0.53 -30.52 8.56 25.60 0.22 -30.30 16 16 H 0.05 2.81 7.74 -2.91 -0.02 2.78 16 17 C 0.01 0.71 5.31 84.66 0.45 1.16 16 18 N -0.92 -54.37 11.38 21.45 0.24 -54.13 16 19 Si 0.95 44.83 29.54 68.60 2.03 46.85 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 21 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 23 C -0.09 -4.70 5.12 30.65 0.16 -4.54 16 24 C 0.07 2.94 5.17 86.33 0.45 3.39 16 25 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 26 H 0.04 0.80 8.09 -2.38 -0.02 0.78 16 27 H 0.05 0.93 7.87 -2.39 -0.02 0.91 16 28 H 0.08 1.23 7.87 -2.39 -0.02 1.21 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.07 1.66 6.44 -2.39 -0.02 1.65 16 35 H 0.05 1.53 6.92 -2.39 -0.02 1.51 16 36 H 0.08 2.40 6.33 -2.39 -0.02 2.39 16 37 H 0.03 0.99 6.57 -2.39 -0.02 0.98 16 38 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 40 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 41 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 42 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.06 3.41 6.18 -2.39 -0.01 3.39 16 44 H 0.06 2.48 7.99 -2.39 -0.02 2.46 16 45 H 0.02 0.78 6.97 -2.39 -0.02 0.77 16 Total: -1.00 -63.66 332.22 1.63 -62.03 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.93 Total: 12.71 kcal Atomic # 6 Polarization: -35.20 SS G_CDS: 3.83 Total: -31.36 kcal Atomic # 7 Polarization: -73.63 SS G_CDS: -3.63 Total: -77.26 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: -1.52 Total: -12.97 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -63.66 1.63 -62.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397159056.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.573 kcal (2) G-P(sol) polarization free energy of solvation -63.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds