Wall clock time and date at job start Mon Mar 30 2020 08:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42894 * 113.99941 * 2 1 4 4 C 1.53008 * 109.47119 * 179.97438 * 3 2 1 5 5 C 1.53005 * 112.84880 * 180.02562 * 4 3 2 6 6 N 1.46898 * 109.46979 * 48.80592 * 5 4 3 7 7 C 1.46845 * 111.00565 * 65.79001 * 6 5 4 8 8 C 1.53034 * 109.52676 * 185.84030 * 7 6 5 9 9 C 1.53126 * 109.27454 * 300.81918 * 8 7 6 10 10 C 1.50703 * 109.52110 * 177.55739 * 9 8 7 11 11 H 1.08001 * 119.99692 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00075 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99920 * 359.97438 * 12 10 9 14 14 Si 1.86791 * 120.00117 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47177 * 90.00145 * 14 12 10 16 16 H 1.48499 * 109.47420 * 209.99682 * 14 12 10 17 17 H 1.48498 * 109.47455 * 329.99999 * 14 12 10 18 18 C 1.53119 * 109.16048 * 57.65518 * 9 8 7 19 19 C 1.46850 * 110.99813 * 190.00067 * 6 5 4 20 20 C 1.53781 * 113.68764 * 311.26648 * 4 3 2 21 21 C 1.53782 * 87.08070 * 89.12768 * 20 4 3 22 22 C 1.53780 * 113.61660 * 48.80371 * 4 3 2 23 23 H 1.08996 * 109.47459 * 300.00220 * 1 2 3 24 24 H 1.08998 * 109.46988 * 60.00311 * 1 2 3 25 25 H 1.09004 * 109.46982 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47612 * 60.00206 * 3 2 1 27 27 H 1.09000 * 109.47481 * 299.99732 * 3 2 1 28 28 H 1.08999 * 109.46784 * 288.80047 * 5 4 3 29 29 H 1.09002 * 109.46549 * 168.80314 * 5 4 3 30 30 H 1.08995 * 109.46315 * 65.81881 * 7 6 5 31 31 H 1.09005 * 109.45975 * 305.85394 * 7 6 5 32 32 H 1.08997 * 109.50792 * 180.88024 * 8 7 6 33 33 H 1.09006 * 109.50471 * 60.75677 * 8 7 6 34 34 H 1.08993 * 109.52259 * 297.74866 * 9 8 7 35 35 H 0.96994 * 119.99975 * 180.02562 * 13 12 10 36 36 H 1.09004 * 109.50440 * 62.28501 * 18 9 8 37 37 H 1.09003 * 109.50154 * 182.40625 * 18 9 8 38 38 H 1.09005 * 109.46186 * 54.13967 * 19 6 5 39 39 H 1.08998 * 109.46012 * 294.17361 * 19 6 5 40 40 H 1.09001 * 113.61010 * 203.67442 * 20 4 3 41 41 H 1.09000 * 113.61957 * 334.57839 * 20 4 3 42 42 H 1.08997 * 113.61707 * 270.88309 * 21 20 4 43 43 H 1.09003 * 113.69078 * 139.98924 * 21 20 4 44 44 H 1.09005 * 113.61321 * 25.34618 * 22 4 3 45 45 H 1.08994 * 113.61812 * 156.25352 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.2390 2.5433 0.0013 6 7 3.6537 3.3973 1.0435 7 6 3.9257 2.8565 2.3813 8 6 3.1817 3.6868 3.4296 9 6 3.6460 5.1434 3.3434 10 6 2.8735 5.9776 4.3326 11 1 2.1261 5.5159 4.9609 12 6 3.1217 7.3298 4.4363 13 7 4.0328 7.8917 3.6723 14 14 2.1647 8.3637 5.6629 15 1 2.8851 8.3843 6.9613 16 1 2.0348 9.7501 5.1470 17 1 0.8135 7.7787 5.8558 18 6 3.3959 5.6675 1.9266 19 6 4.1337 4.7798 0.9219 20 6 4.0776 0.2101 1.0596 21 6 3.9374 -0.8956 0.0000 22 6 4.0768 0.2106 -1.0592 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 4.1124 3.0184 -0.9715 29 1 5.3012 2.4022 0.2013 30 1 4.9968 2.8976 2.5788 31 1 3.5870 1.8216 2.4304 32 1 3.3962 3.2947 4.4238 33 1 2.1093 3.6349 3.2409 34 1 4.7105 5.2003 3.5703 35 1 4.2077 8.8429 3.7455 36 1 2.3270 5.6468 1.7143 37 1 3.7636 6.6906 1.8469 38 1 3.9461 5.1418 -0.0890 39 1 5.2039 4.8119 1.1263 40 1 5.1095 0.4094 1.3487 41 1 3.4145 0.0816 1.9151 42 1 2.9607 -1.3794 0.0002 43 1 4.7625 -1.6079 -0.0015 44 1 3.4128 0.0826 -1.9142 45 1 5.1083 0.4101 -1.3492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397173896.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:05:57 Heat of formation + Delta-G solvation = -31.501399 kcal Electronic energy + Delta-G solvation = -21849.700132 eV Core-core repulsion = 18867.463543 eV Total energy + Delta-G solvation = -2982.236588 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.11838 -37.76210 -36.62289 -33.76306 -31.40819 -29.87397 -28.81796 -27.20239 -25.63556 -25.55559 -24.29165 -22.49733 -21.74340 -20.70501 -18.70807 -18.33140 -16.44516 -16.34331 -15.90447 -15.68198 -14.81480 -14.53481 -14.39729 -14.06076 -13.79928 -13.15090 -13.04125 -12.79397 -12.45725 -12.37216 -12.16532 -11.80791 -11.60349 -11.34453 -11.29031 -11.17410 -10.92288 -10.69169 -10.49966 -10.25071 -10.18893 -10.03371 -10.00574 -9.72829 -9.45278 -9.40454 -8.83175 -8.67329 -8.26319 -7.69706 -5.94732 -3.99878 3.32496 3.39259 3.42815 3.82816 4.37049 4.47402 4.70527 4.79982 4.96290 5.01863 5.28755 5.35469 5.36714 5.49923 5.63007 5.65341 5.70270 5.79213 5.81317 5.82804 5.90418 5.96573 5.97466 6.06048 6.11488 6.19234 6.22355 6.31677 6.41407 6.47913 6.64008 6.66362 6.70111 6.90938 7.12476 7.20381 7.29753 7.47897 7.66612 7.75047 7.87274 8.08675 8.19439 8.51705 9.03940 9.64374 11.11428 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029741 B = 0.004539 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.237250 B = 6166.645200 C = 6543.622175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.390 6.390 3 C 0.094 3.906 4 C -0.072 4.072 5 C 0.071 3.929 6 N -0.533 5.533 7 C 0.051 3.949 8 C -0.106 4.106 9 C 0.048 3.952 10 C -0.509 4.509 11 H 0.053 0.947 12 C 0.060 3.940 13 N -0.893 5.893 14 Si 0.889 3.111 15 H -0.282 1.282 16 H -0.287 1.287 17 H -0.275 1.275 18 C -0.103 4.103 19 C 0.057 3.943 20 C -0.126 4.126 21 C -0.135 4.135 22 C -0.127 4.127 23 H 0.041 0.959 24 H 0.036 0.964 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.047 0.953 28 H 0.069 0.931 29 H 0.033 0.967 30 H 0.020 0.980 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.019 0.981 35 H 0.259 0.741 36 H 0.042 0.958 37 H 0.091 0.909 38 H 0.053 0.947 39 H 0.021 0.979 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.054 0.946 44 H 0.065 0.935 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.687 -14.423 -9.248 17.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.310 6.310 3 C 0.017 3.983 4 C -0.072 4.072 5 C -0.058 4.058 6 N -0.258 5.258 7 C -0.076 4.076 8 C -0.144 4.144 9 C 0.029 3.971 10 C -0.547 4.547 11 H 0.072 0.928 12 C -0.140 4.140 13 N -0.532 5.532 14 Si 0.717 3.283 15 H -0.208 1.208 16 H -0.213 1.213 17 H -0.200 1.200 18 C -0.141 4.141 19 C -0.070 4.070 20 C -0.164 4.164 21 C -0.172 4.172 22 C -0.165 4.165 23 H 0.059 0.941 24 H 0.055 0.945 25 H 0.098 0.902 26 H 0.089 0.911 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.051 0.949 30 H 0.039 0.961 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.037 0.963 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.109 0.891 38 H 0.072 0.928 39 H 0.039 0.961 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.115 0.885 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.000 -14.385 -9.344 17.269 hybrid contribution 0.256 1.001 0.730 1.265 sum -1.744 -13.384 -8.614 16.011 Atomic orbital electron populations 1.22674 0.81876 1.02012 0.99992 1.87848 1.18878 1.28720 1.95528 1.22085 0.91356 0.83433 1.01382 1.21792 0.93851 0.93811 0.97757 1.22000 0.95479 0.92155 0.96144 1.62020 1.58663 1.02331 1.02785 1.22344 0.97662 0.98688 0.88905 1.21672 0.99412 0.97901 0.95386 1.18679 0.96194 0.89379 0.92817 1.21221 1.20750 0.93007 1.19767 0.92828 1.24963 0.95216 0.97976 0.95853 1.69878 1.32834 1.11323 1.39156 0.86646 0.80476 0.79646 0.81524 1.20826 1.21321 1.19983 1.21643 0.98174 0.99745 0.94542 1.22266 0.97017 0.87903 0.99842 1.22995 1.00497 0.95938 0.96946 1.22886 1.02145 0.96034 0.96184 1.22876 1.00400 0.96379 0.96861 0.94061 0.94492 0.90233 0.91119 0.93500 0.91261 0.94856 0.96134 0.91231 0.93409 0.92739 0.96258 0.93153 0.93931 0.89075 0.92803 0.96066 0.90779 0.91164 0.88509 0.92737 0.91644 0.90769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.39 -4.94 7.58 -35.23 -0.27 -5.20 16 3 C 0.09 1.26 5.17 37.16 0.19 1.45 16 4 C -0.07 -0.93 0.80 -153.69 -0.12 -1.05 16 5 C 0.07 1.02 4.55 -3.82 -0.02 1.01 16 6 N -0.53 -9.31 3.74 -234.67 -0.88 -10.18 16 7 C 0.05 0.93 4.91 -3.84 -0.02 0.91 16 8 C -0.11 -2.24 5.32 -26.65 -0.14 -2.38 16 9 C 0.05 1.20 2.16 -91.64 -0.20 1.00 16 10 C -0.51 -14.07 8.56 -34.44 -0.29 -14.37 16 11 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 12 C 0.06 1.68 5.31 -17.82 -0.09 1.59 16 13 N -0.89 -25.55 11.38 55.43 0.63 -24.92 16 14 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 18 C -0.10 -2.43 5.12 -26.65 -0.14 -2.56 16 19 C 0.06 1.12 5.46 -3.83 -0.02 1.09 16 20 C -0.13 -1.60 4.99 -25.92 -0.13 -1.73 16 21 C -0.14 -1.55 7.53 -25.91 -0.20 -1.74 16 22 C -0.13 -1.45 7.06 -25.92 -0.18 -1.63 16 23 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 1.08 7.50 -51.93 -0.39 0.70 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.96 7.99 -51.93 -0.41 0.54 16 29 H 0.03 0.48 7.92 -51.93 -0.41 0.07 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 1.13 4.61 -51.93 -0.24 0.89 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.09 2.40 6.18 -51.93 -0.32 2.08 16 38 H 0.05 0.97 8.02 -51.93 -0.42 0.55 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.93 7.96 -51.93 -0.41 0.52 16 41 H 0.07 0.95 7.12 -51.93 -0.37 0.58 16 42 H 0.10 1.17 6.15 -51.93 -0.32 0.85 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 45 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 LS Contribution 336.78 15.07 5.08 5.08 Total: -1.00 -27.98 336.78 -9.04 -37.02 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -8.33 Total: -1.19 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -0.25 Total: -16.99 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: -0.25 Total: -35.10 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.27 Total: -5.20 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.98 -9.04 -37.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397173896.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.517 kcal (2) G-P(sol) polarization free energy of solvation -27.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds