Wall clock time and date at job start Mon Mar 30 2020 08:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42894 * 113.99941 * 2 1 4 4 C 1.53008 * 109.47119 * 179.97438 * 3 2 1 5 5 C 1.53005 * 112.84880 * 180.02562 * 4 3 2 6 6 N 1.46898 * 109.46979 * 48.80592 * 5 4 3 7 7 C 1.46845 * 111.00565 * 65.79001 * 6 5 4 8 8 C 1.53034 * 109.52676 * 185.84030 * 7 6 5 9 9 C 1.53126 * 109.27454 * 300.81918 * 8 7 6 10 10 C 1.50703 * 109.52110 * 177.55739 * 9 8 7 11 11 H 1.08001 * 119.99692 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00075 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99920 * 359.97438 * 12 10 9 14 14 Si 1.86791 * 120.00117 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47177 * 90.00145 * 14 12 10 16 16 H 1.48499 * 109.47420 * 209.99682 * 14 12 10 17 17 H 1.48498 * 109.47455 * 329.99999 * 14 12 10 18 18 C 1.53119 * 109.16048 * 57.65518 * 9 8 7 19 19 C 1.46850 * 110.99813 * 190.00067 * 6 5 4 20 20 C 1.53781 * 113.68764 * 311.26648 * 4 3 2 21 21 C 1.53782 * 87.08070 * 89.12768 * 20 4 3 22 22 C 1.53780 * 113.61660 * 48.80371 * 4 3 2 23 23 H 1.08996 * 109.47459 * 300.00220 * 1 2 3 24 24 H 1.08998 * 109.46988 * 60.00311 * 1 2 3 25 25 H 1.09004 * 109.46982 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47612 * 60.00206 * 3 2 1 27 27 H 1.09000 * 109.47481 * 299.99732 * 3 2 1 28 28 H 1.08999 * 109.46784 * 288.80047 * 5 4 3 29 29 H 1.09002 * 109.46549 * 168.80314 * 5 4 3 30 30 H 1.08995 * 109.46315 * 65.81881 * 7 6 5 31 31 H 1.09005 * 109.45975 * 305.85394 * 7 6 5 32 32 H 1.08997 * 109.50792 * 180.88024 * 8 7 6 33 33 H 1.09006 * 109.50471 * 60.75677 * 8 7 6 34 34 H 1.08993 * 109.52259 * 297.74866 * 9 8 7 35 35 H 0.96994 * 119.99975 * 180.02562 * 13 12 10 36 36 H 1.09004 * 109.50440 * 62.28501 * 18 9 8 37 37 H 1.09003 * 109.50154 * 182.40625 * 18 9 8 38 38 H 1.09005 * 109.46186 * 54.13967 * 19 6 5 39 39 H 1.08998 * 109.46012 * 294.17361 * 19 6 5 40 40 H 1.09001 * 113.61010 * 203.67442 * 20 4 3 41 41 H 1.09000 * 113.61957 * 334.57839 * 20 4 3 42 42 H 1.08997 * 113.61707 * 270.88309 * 21 20 4 43 43 H 1.09003 * 113.69078 * 139.98924 * 21 20 4 44 44 H 1.09005 * 113.61321 * 25.34618 * 22 4 3 45 45 H 1.08994 * 113.61812 * 156.25352 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.2390 2.5433 0.0013 6 7 3.6537 3.3973 1.0435 7 6 3.9257 2.8565 2.3813 8 6 3.1817 3.6868 3.4296 9 6 3.6460 5.1434 3.3434 10 6 2.8735 5.9776 4.3326 11 1 2.1261 5.5159 4.9609 12 6 3.1217 7.3298 4.4363 13 7 4.0328 7.8917 3.6723 14 14 2.1647 8.3637 5.6629 15 1 2.8851 8.3843 6.9613 16 1 2.0348 9.7501 5.1470 17 1 0.8135 7.7787 5.8558 18 6 3.3959 5.6675 1.9266 19 6 4.1337 4.7798 0.9219 20 6 4.0776 0.2101 1.0596 21 6 3.9374 -0.8956 0.0000 22 6 4.0768 0.2106 -1.0592 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 4.1124 3.0184 -0.9715 29 1 5.3012 2.4022 0.2013 30 1 4.9968 2.8976 2.5788 31 1 3.5870 1.8216 2.4304 32 1 3.3962 3.2947 4.4238 33 1 2.1093 3.6349 3.2409 34 1 4.7105 5.2003 3.5703 35 1 4.2077 8.8429 3.7455 36 1 2.3270 5.6468 1.7143 37 1 3.7636 6.6906 1.8469 38 1 3.9461 5.1418 -0.0890 39 1 5.2039 4.8119 1.1263 40 1 5.1095 0.4094 1.3487 41 1 3.4145 0.0816 1.9151 42 1 2.9607 -1.3794 0.0002 43 1 4.7625 -1.6079 -0.0015 44 1 3.4128 0.0826 -1.9142 45 1 5.1083 0.4101 -1.3492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397173896.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:05:56 Heat of formation + Delta-G solvation = -46.467346 kcal Electronic energy + Delta-G solvation = -21850.349104 eV Core-core repulsion = 18867.463543 eV Total energy + Delta-G solvation = -2982.885560 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.20980 -39.24304 -37.63286 -35.57699 -33.25189 -31.52347 -30.06462 -28.42518 -27.04826 -26.59933 -25.60925 -23.94256 -23.41617 -22.06553 -20.32889 -19.47111 -18.44010 -17.34340 -17.18605 -16.67921 -16.53316 -16.02601 -15.73096 -15.30263 -14.91739 -14.74805 -14.48580 -14.22938 -13.96641 -13.88268 -13.38433 -13.06535 -12.93408 -12.83059 -12.72204 -12.58147 -12.29425 -12.22583 -12.08082 -11.94175 -11.86228 -11.36983 -11.24685 -11.08648 -10.89541 -10.64919 -10.57651 -10.42373 -10.32262 -9.14202 -8.07567 -6.20928 1.40614 1.41446 1.51717 2.43921 2.88054 3.05442 3.19360 3.66061 3.80878 3.92090 4.08893 4.27364 4.27842 4.35650 4.42569 4.50342 4.57646 4.62182 4.68898 4.72474 4.72981 4.84340 4.88005 4.89848 4.92926 4.93342 4.97718 5.00461 5.03372 5.13323 5.21406 5.24162 5.30624 5.35475 5.51339 5.57787 5.64049 5.75301 6.01455 6.04707 6.32087 6.36077 6.37250 6.41851 6.90574 7.46782 8.96941 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029741 B = 0.004539 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.237250 B = 6166.645200 C = 6543.622175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.099 3.901 4 C -0.075 4.075 5 C 0.072 3.928 6 N -0.535 5.535 7 C 0.062 3.938 8 C -0.099 4.099 9 C 0.045 3.955 10 C -0.533 4.533 11 H 0.049 0.951 12 C 0.013 3.987 13 N -0.918 5.918 14 Si 0.952 3.048 15 H -0.277 1.277 16 H -0.283 1.283 17 H -0.269 1.269 18 C -0.093 4.093 19 C 0.068 3.932 20 C -0.130 4.130 21 C -0.127 4.127 22 C -0.117 4.117 23 H 0.036 0.964 24 H 0.044 0.956 25 H 0.099 0.901 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.080 0.920 29 H 0.038 0.962 30 H 0.015 0.985 31 H 0.092 0.908 32 H 0.048 0.952 33 H 0.049 0.951 34 H -0.014 1.014 35 H 0.260 0.740 36 H 0.030 0.970 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.013 0.987 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.091 0.909 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.028 -15.816 -10.123 18.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C 0.022 3.978 4 C -0.075 4.075 5 C -0.055 4.055 6 N -0.260 5.260 7 C -0.065 4.065 8 C -0.137 4.137 9 C 0.026 3.974 10 C -0.571 4.571 11 H 0.067 0.933 12 C -0.185 4.185 13 N -0.557 5.557 14 Si 0.778 3.222 15 H -0.202 1.202 16 H -0.208 1.208 17 H -0.194 1.194 18 C -0.132 4.132 19 C -0.060 4.060 20 C -0.167 4.167 21 C -0.164 4.164 22 C -0.155 4.155 23 H 0.054 0.946 24 H 0.063 0.937 25 H 0.118 0.882 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.099 0.901 29 H 0.056 0.944 30 H 0.033 0.967 31 H 0.110 0.890 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.004 0.996 35 H 0.069 0.931 36 H 0.049 0.951 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.031 0.969 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.109 0.891 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.346 -15.797 -10.224 18.962 hybrid contribution 0.339 1.416 1.009 1.771 sum -2.007 -14.381 -9.215 17.198 Atomic orbital electron populations 1.22846 0.80654 1.03422 1.00145 1.87836 1.20222 1.28053 1.95521 1.21940 0.91762 0.83745 1.00317 1.21802 0.93523 0.93127 0.99070 1.22084 0.95737 0.92395 0.95321 1.61964 1.59042 1.01692 1.03256 1.22219 0.96789 0.99090 0.88418 1.21538 0.99313 0.96000 0.96802 1.18653 0.93832 0.91712 0.93199 1.21584 1.21088 0.93888 1.20551 0.93265 1.25723 0.96112 0.99128 0.97564 1.70015 1.33888 1.11554 1.40286 0.85646 0.79267 0.77993 0.79285 1.20247 1.20821 1.19395 1.21395 0.97647 0.99041 0.95073 1.22039 0.95773 0.88722 0.99437 1.23006 1.00278 0.96635 0.96798 1.22805 1.02361 0.95934 0.95338 1.22844 1.01017 0.95206 0.96442 0.94551 0.93700 0.88249 0.93406 0.93368 0.90149 0.94373 0.96664 0.89000 0.93322 0.93255 0.99611 0.93108 0.95091 0.92166 0.90803 0.96883 0.90560 0.92269 0.89109 0.91378 0.91270 0.89586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.72 16 2 O -0.40 -9.30 7.58 -148.98 -1.13 -10.43 16 3 C 0.10 2.50 5.17 71.98 0.37 2.87 16 4 C -0.07 -1.77 0.80 -51.65 -0.04 -1.81 16 5 C 0.07 1.94 4.55 86.31 0.39 2.33 16 6 N -0.53 -18.13 3.74 -896.36 -3.35 -21.48 16 7 C 0.06 2.21 4.91 86.33 0.42 2.64 16 8 C -0.10 -4.22 5.32 30.65 0.16 -4.06 16 9 C 0.04 2.30 2.16 -11.46 -0.02 2.27 16 10 C -0.53 -30.16 8.56 25.60 0.22 -29.94 16 11 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 12 C 0.01 0.74 5.31 84.65 0.45 1.19 16 13 N -0.92 -53.75 11.38 21.45 0.24 -53.51 16 14 Si 0.95 44.32 29.54 68.60 2.03 46.35 16 15 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 16 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 18 C -0.09 -4.51 5.12 30.65 0.16 -4.36 16 19 C 0.07 2.64 5.46 86.32 0.47 3.11 16 20 C -0.13 -3.01 4.99 31.12 0.16 -2.85 16 21 C -0.13 -2.56 7.53 31.12 0.23 -2.32 16 22 C -0.12 -2.32 7.06 31.12 0.22 -2.10 16 23 H 0.04 0.70 8.14 -2.39 -0.02 0.69 16 24 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.10 1.43 8.14 -2.38 -0.02 1.42 16 26 H 0.05 1.43 7.50 -2.39 -0.02 1.41 16 27 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.08 2.00 7.99 -2.39 -0.02 1.98 16 29 H 0.04 1.01 7.92 -2.39 -0.02 0.99 16 30 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.09 2.88 4.61 -2.38 -0.01 2.87 16 32 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 34 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 35 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 36 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.06 3.28 6.18 -2.39 -0.01 3.27 16 38 H 0.07 2.57 8.02 -2.38 -0.02 2.55 16 39 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.08 1.74 7.96 -2.39 -0.02 1.72 16 41 H 0.06 1.50 7.12 -2.39 -0.02 1.48 16 42 H 0.09 1.97 6.15 -2.39 -0.01 1.96 16 43 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.07 1.34 8.10 -2.38 -0.02 1.32 16 45 H 0.09 1.52 8.10 -2.39 -0.02 1.50 16 Total: -1.00 -60.53 336.78 3.16 -57.37 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.92 Total: 13.00 kcal Atomic # 6 Polarization: -35.75 SS G_CDS: 4.44 Total: -31.31 kcal Atomic # 7 Polarization: -71.88 SS G_CDS: -3.10 Total: -74.99 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: -1.13 Total: -10.43 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -60.53 3.16 -57.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397173896.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.907 kcal (2) G-P(sol) polarization free energy of solvation -60.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds