Wall clock time and date at job start Mon Mar 30 2020 08:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00087 * 2 1 4 4 H 1.09001 * 109.46497 * 30.00665 * 3 2 1 5 5 C 1.52993 * 109.47403 * 270.00382 * 3 2 1 6 6 C 1.53002 * 109.47049 * 299.99967 * 5 3 2 7 7 C 1.53008 * 109.46914 * 299.99998 * 6 5 3 8 8 C 1.52997 * 109.47025 * 59.99864 * 7 6 5 9 9 C 1.53000 * 109.47569 * 300.00183 * 8 7 6 10 10 H 1.08997 * 109.46644 * 300.00363 * 9 8 7 11 11 N 1.46895 * 109.47495 * 180.02562 * 9 8 7 12 12 C 1.46843 * 110.99970 * 194.20905 * 11 9 8 13 13 C 1.53042 * 109.52278 * 174.15687 * 12 11 9 14 14 C 1.53127 * 109.27596 * 59.17923 * 13 12 11 15 15 C 1.53123 * 109.15019 * 302.34079 * 14 13 12 16 16 H 1.08997 * 109.51083 * 297.71779 * 15 14 13 17 17 C 1.50704 * 109.49150 * 177.60758 * 15 14 13 18 18 H 1.08001 * 119.99790 * 240.20543 * 17 15 14 19 19 C 1.37879 * 120.00329 * 60.19685 * 17 15 14 20 20 N 1.31518 * 119.99424 * 0.02562 * 19 17 15 21 21 Si 1.86796 * 120.00247 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46685 * 60.00535 * 21 19 17 23 23 H 1.48497 * 109.47185 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47178 * 300.00769 * 21 19 17 25 25 C 1.46847 * 110.99982 * 69.99540 * 11 9 8 26 26 H 1.09002 * 109.47489 * 59.99556 * 1 2 3 27 27 H 1.09002 * 109.46957 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47388 * 299.99321 * 1 2 3 29 29 H 1.08997 * 109.47067 * 180.02562 * 5 3 2 30 30 H 1.08999 * 109.47130 * 59.99302 * 5 3 2 31 31 H 1.09006 * 109.47084 * 180.02562 * 6 5 3 32 32 H 1.08998 * 109.47531 * 59.99581 * 6 5 3 33 33 H 1.08998 * 109.46681 * 300.00104 * 7 6 5 34 34 H 1.08994 * 109.46599 * 180.02562 * 7 6 5 35 35 H 1.09000 * 109.46883 * 179.97438 * 8 7 6 36 36 H 1.08998 * 109.46728 * 60.00299 * 8 7 6 37 37 H 1.08993 * 109.46313 * 294.17341 * 12 11 9 38 38 H 1.09000 * 109.46480 * 54.15451 * 12 11 9 39 39 H 1.08997 * 109.50758 * 179.11703 * 13 12 11 40 40 H 1.08998 * 109.50897 * 299.20258 * 13 12 11 41 41 H 1.09003 * 109.52393 * 62.24889 * 14 13 12 42 42 H 1.08998 * 109.52208 * 182.44010 * 14 13 12 43 43 H 0.97000 * 119.99419 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.46481 * 305.85957 * 25 11 9 45 45 H 1.08994 * 109.46283 * 65.83811 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 0.5140 5 6 2.2176 1.7715 -1.4424 6 6 3.1514 0.7975 -2.1638 7 6 4.5001 0.7552 -1.4425 8 6 4.2927 0.2893 0.0000 9 6 3.3588 1.2632 0.7213 10 1 3.8022 2.2590 0.7213 11 7 3.1602 0.8162 2.1064 12 6 2.0268 1.5137 2.7271 13 6 1.7586 0.9217 4.1127 14 6 3.0122 1.0742 4.9788 15 6 4.1885 0.3804 4.2864 16 1 3.9782 -0.6849 4.1914 17 6 5.4395 0.5760 5.1037 18 1 6.2910 1.0832 4.6746 19 6 5.4969 0.1076 6.3992 20 7 4.4601 -0.5104 6.9215 21 14 7.0478 0.3495 7.4120 22 1 7.3323 1.8012 7.5425 23 1 6.8552 -0.2409 8.7609 24 1 8.1889 -0.3199 6.7374 25 6 4.3864 0.9881 2.8959 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 2.6614 2.7670 -1.4423 30 1 1.2568 1.8015 -1.9562 31 1 3.2995 1.1297 -3.1913 32 1 2.7081 -0.1983 -2.1638 33 1 4.9434 1.7510 -1.4425 34 1 5.1654 0.0617 -1.9566 35 1 5.2536 0.2588 0.5136 36 1 3.8494 -0.7065 -0.0001 37 1 2.2617 2.5736 2.8242 38 1 1.1409 1.3937 2.1034 39 1 0.9273 1.4501 4.5795 40 1 1.5094 -0.1349 4.0151 41 1 3.2386 2.1325 5.1088 42 1 2.8403 0.6152 5.9523 43 1 4.5007 -0.8402 7.8328 44 1 5.2143 0.4867 2.3948 45 1 4.6101 2.0505 2.9924 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397598858.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:26:50 Heat of formation + Delta-G solvation = -60.524889 kcal Electronic energy + Delta-G solvation = -22221.579040 eV Core-core repulsion = 19238.083899 eV Total energy + Delta-G solvation = -2983.495141 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.83882 -37.37875 -35.78368 -33.49823 -31.74872 -30.37921 -29.59181 -28.34869 -26.24160 -24.99127 -23.33193 -22.60725 -21.06694 -20.72124 -19.38209 -18.53126 -16.67387 -16.17570 -15.69027 -15.37877 -14.73618 -14.50011 -14.09016 -13.73228 -13.67514 -13.42869 -13.00935 -12.82249 -12.52130 -12.22960 -12.16852 -11.98128 -11.69223 -11.50127 -11.20259 -11.01127 -10.89475 -10.69987 -10.63675 -10.47992 -10.33959 -10.11511 -9.79414 -9.71902 -9.38348 -9.22867 -8.91236 -8.62379 -8.24205 -7.50369 -5.92087 -3.98025 3.35349 3.39939 3.42384 3.93898 4.37506 4.54160 4.76140 4.91517 5.03752 5.28729 5.31747 5.36835 5.37900 5.44424 5.53389 5.59351 5.62722 5.70630 5.75039 5.83494 5.86532 5.95843 5.97439 6.10252 6.19238 6.26743 6.30938 6.35423 6.45848 6.48418 6.61342 6.73152 6.79662 6.82954 7.07702 7.29448 7.39485 7.49108 7.77590 7.81795 7.95176 8.16229 8.24292 8.54779 9.06034 9.65808 11.13903 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028292 B = 0.005202 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.457752 B = 5380.841642 C = 6041.002672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.357 6.357 3 C 0.093 3.907 4 H 0.059 0.941 5 C -0.140 4.140 6 C -0.112 4.112 7 C -0.117 4.117 8 C -0.106 4.106 9 C 0.091 3.909 10 H 0.041 0.959 11 N -0.524 5.524 12 C 0.061 3.939 13 C -0.116 4.116 14 C -0.110 4.110 15 C 0.056 3.944 16 H 0.035 0.965 17 C -0.514 4.514 18 H 0.052 0.948 19 C 0.063 3.937 20 N -0.889 5.889 21 Si 0.889 3.111 22 H -0.279 1.279 23 H -0.288 1.288 24 H -0.278 1.278 25 C 0.067 3.933 26 H 0.031 0.969 27 H 0.082 0.918 28 H 0.039 0.961 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.017 0.983 38 H 0.058 0.942 39 H 0.043 0.957 40 H 0.061 0.939 41 H 0.028 0.972 42 H 0.089 0.911 43 H 0.259 0.741 44 H 0.061 0.939 45 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.654 4.004 -15.411 17.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.035 3.965 4 H 0.077 0.923 5 C -0.179 4.179 6 C -0.149 4.149 7 C -0.155 4.155 8 C -0.144 4.144 9 C -0.018 4.018 10 H 0.059 0.941 11 N -0.248 5.248 12 C -0.067 4.067 13 C -0.153 4.153 14 C -0.148 4.148 15 C 0.037 3.963 16 H 0.053 0.947 17 C -0.553 4.553 18 H 0.070 0.930 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.718 3.282 22 H -0.204 1.204 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.060 4.060 26 H 0.050 0.950 27 H 0.101 0.899 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.035 0.965 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.047 0.953 42 H 0.108 0.892 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -6.710 3.246 -15.237 16.963 hybrid contribution 0.758 1.365 0.646 1.690 sum -5.952 4.611 -14.591 16.419 Atomic orbital electron populations 1.22732 0.82411 1.02368 0.99132 1.88033 1.18196 1.26595 1.94714 1.22216 0.94748 0.85327 0.94248 0.92333 1.22034 0.99914 0.99421 0.96494 1.21412 0.95554 1.00192 0.97771 1.21530 0.96785 1.00943 0.96258 1.21468 0.99086 1.00221 0.93607 1.21656 0.93666 0.96698 0.89805 0.94116 1.61962 1.05994 1.56831 1.00008 1.22104 0.93508 0.94687 0.96396 1.21657 0.99082 1.00474 0.94130 1.21645 0.93442 0.98796 1.00886 1.18643 0.93617 0.95982 0.88033 0.94729 1.21124 0.99321 1.37075 0.97748 0.92993 1.24927 0.96040 0.95091 0.97740 1.69891 1.29245 1.38589 1.15027 0.86705 0.83887 0.78285 0.79364 1.20445 1.21347 1.20322 1.22346 0.89577 0.97710 0.96320 0.95002 0.89948 0.94275 0.91462 0.92111 0.92754 0.91159 0.92624 0.92033 0.91790 0.90292 0.96459 0.92411 0.93851 0.92040 0.95340 0.89218 0.93071 0.92056 0.96695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.68 101.05 1.08 1.43 16 2 O -0.36 -5.23 8.70 -35.23 -0.31 -5.54 16 3 C 0.09 1.27 1.62 -26.73 -0.04 1.22 16 4 H 0.06 0.79 5.85 -51.93 -0.30 0.48 16 5 C -0.14 -1.57 5.63 -26.73 -0.15 -1.72 16 6 C -0.11 -1.24 5.78 -26.73 -0.15 -1.39 16 7 C -0.12 -1.40 5.92 -26.73 -0.16 -1.56 16 8 C -0.11 -1.59 5.07 -26.73 -0.14 -1.73 16 9 C 0.09 1.44 1.78 -67.72 -0.12 1.31 16 10 H 0.04 0.65 8.08 -51.93 -0.42 0.23 16 11 N -0.52 -10.00 4.39 -226.70 -0.99 -11.00 16 12 C 0.06 1.11 4.85 -3.83 -0.02 1.09 16 13 C -0.12 -2.33 6.09 -26.64 -0.16 -2.50 16 14 C -0.11 -2.65 5.03 -26.60 -0.13 -2.79 16 15 C 0.06 1.43 2.26 -91.69 -0.21 1.23 16 16 H 0.03 0.99 8.14 -51.93 -0.42 0.57 16 17 C -0.51 -14.30 8.56 -34.44 -0.29 -14.59 16 18 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 19 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 20 N -0.89 -25.70 11.36 55.43 0.63 -25.07 16 21 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 C 0.07 1.47 4.53 -3.84 -0.02 1.45 16 26 H 0.03 0.31 7.87 -51.93 -0.41 -0.10 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.04 0.45 7.15 -51.93 -0.37 0.07 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.61 7.87 -51.93 -0.41 0.20 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.85 7.68 -51.93 -0.40 0.45 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 1.02 6.58 -51.93 -0.34 0.68 16 36 H 0.08 1.31 7.68 -51.93 -0.40 0.91 16 37 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.06 0.94 4.58 -51.93 -0.24 0.70 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.09 2.42 6.16 -51.93 -0.32 2.10 16 43 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.06 1.33 6.40 -51.93 -0.33 1.00 16 45 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 329.94 15.07 4.97 4.97 Total: -1.00 -28.85 329.94 -9.47 -38.31 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -8.13 Total: -1.29 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: -0.61 Total: -16.87 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: -0.36 Total: -36.07 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: -0.31 Total: -5.54 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.85 -9.47 -38.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397598858.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.213 kcal (2) G-P(sol) polarization free energy of solvation -28.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds