Wall clock time and date at job start Mon Mar 30 2020 08:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00087 * 2 1 4 4 H 1.09001 * 109.46497 * 30.00665 * 3 2 1 5 5 C 1.52993 * 109.47403 * 270.00382 * 3 2 1 6 6 C 1.53002 * 109.47049 * 299.99967 * 5 3 2 7 7 C 1.53008 * 109.46914 * 299.99998 * 6 5 3 8 8 C 1.52997 * 109.47025 * 59.99864 * 7 6 5 9 9 C 1.53000 * 109.47569 * 300.00183 * 8 7 6 10 10 H 1.08997 * 109.46644 * 300.00363 * 9 8 7 11 11 N 1.46895 * 109.47495 * 180.02562 * 9 8 7 12 12 C 1.46843 * 110.99970 * 194.20905 * 11 9 8 13 13 C 1.53042 * 109.52278 * 174.15687 * 12 11 9 14 14 C 1.53127 * 109.27596 * 59.17923 * 13 12 11 15 15 C 1.53123 * 109.15019 * 302.34079 * 14 13 12 16 16 H 1.08997 * 109.51083 * 297.71779 * 15 14 13 17 17 C 1.50704 * 109.49150 * 177.60758 * 15 14 13 18 18 H 1.08001 * 119.99790 * 240.20543 * 17 15 14 19 19 C 1.37879 * 120.00329 * 60.19685 * 17 15 14 20 20 N 1.31518 * 119.99424 * 0.02562 * 19 17 15 21 21 Si 1.86796 * 120.00247 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46685 * 60.00535 * 21 19 17 23 23 H 1.48497 * 109.47185 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47178 * 300.00769 * 21 19 17 25 25 C 1.46847 * 110.99982 * 69.99540 * 11 9 8 26 26 H 1.09002 * 109.47489 * 59.99556 * 1 2 3 27 27 H 1.09002 * 109.46957 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47388 * 299.99321 * 1 2 3 29 29 H 1.08997 * 109.47067 * 180.02562 * 5 3 2 30 30 H 1.08999 * 109.47130 * 59.99302 * 5 3 2 31 31 H 1.09006 * 109.47084 * 180.02562 * 6 5 3 32 32 H 1.08998 * 109.47531 * 59.99581 * 6 5 3 33 33 H 1.08998 * 109.46681 * 300.00104 * 7 6 5 34 34 H 1.08994 * 109.46599 * 180.02562 * 7 6 5 35 35 H 1.09000 * 109.46883 * 179.97438 * 8 7 6 36 36 H 1.08998 * 109.46728 * 60.00299 * 8 7 6 37 37 H 1.08993 * 109.46313 * 294.17341 * 12 11 9 38 38 H 1.09000 * 109.46480 * 54.15451 * 12 11 9 39 39 H 1.08997 * 109.50758 * 179.11703 * 13 12 11 40 40 H 1.08998 * 109.50897 * 299.20258 * 13 12 11 41 41 H 1.09003 * 109.52393 * 62.24889 * 14 13 12 42 42 H 1.08998 * 109.52208 * 182.44010 * 14 13 12 43 43 H 0.97000 * 119.99419 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.46481 * 305.85957 * 25 11 9 45 45 H 1.08994 * 109.46283 * 65.83811 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 0.5140 5 6 2.2176 1.7715 -1.4424 6 6 3.1514 0.7975 -2.1638 7 6 4.5001 0.7552 -1.4425 8 6 4.2927 0.2893 0.0000 9 6 3.3588 1.2632 0.7213 10 1 3.8022 2.2590 0.7213 11 7 3.1602 0.8162 2.1064 12 6 2.0268 1.5137 2.7271 13 6 1.7586 0.9217 4.1127 14 6 3.0122 1.0742 4.9788 15 6 4.1885 0.3804 4.2864 16 1 3.9782 -0.6849 4.1914 17 6 5.4395 0.5760 5.1037 18 1 6.2910 1.0832 4.6746 19 6 5.4969 0.1076 6.3992 20 7 4.4601 -0.5104 6.9215 21 14 7.0478 0.3495 7.4120 22 1 7.3323 1.8012 7.5425 23 1 6.8552 -0.2409 8.7609 24 1 8.1889 -0.3199 6.7374 25 6 4.3864 0.9881 2.8959 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 2.6614 2.7670 -1.4423 30 1 1.2568 1.8015 -1.9562 31 1 3.2995 1.1297 -3.1913 32 1 2.7081 -0.1983 -2.1638 33 1 4.9434 1.7510 -1.4425 34 1 5.1654 0.0617 -1.9566 35 1 5.2536 0.2588 0.5136 36 1 3.8494 -0.7065 -0.0001 37 1 2.2617 2.5736 2.8242 38 1 1.1409 1.3937 2.1034 39 1 0.9273 1.4501 4.5795 40 1 1.5094 -0.1349 4.0151 41 1 3.2386 2.1325 5.1088 42 1 2.8403 0.6152 5.9523 43 1 4.5007 -0.8402 7.8328 44 1 5.2143 0.4867 2.3948 45 1 4.6101 2.0505 2.9924 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397598858.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:26:49 Heat of formation + Delta-G solvation = -77.449030 kcal Electronic energy + Delta-G solvation = -22222.312926 eV Core-core repulsion = 19238.083899 eV Total energy + Delta-G solvation = -2984.229027 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.06416 -38.87673 -36.86241 -35.33245 -33.42910 -31.91585 -30.95275 -29.64286 -27.19385 -26.96060 -24.84776 -23.98498 -22.41809 -22.16001 -20.48683 -20.32259 -18.47102 -17.60815 -16.88173 -16.61590 -16.34803 -15.89752 -15.46814 -15.15887 -14.96170 -14.74412 -14.42967 -14.26512 -14.15853 -13.72555 -13.45745 -13.28882 -12.94957 -12.87148 -12.79548 -12.52448 -12.50900 -12.20986 -12.06851 -11.82329 -11.73348 -11.52991 -11.42205 -11.30827 -10.93804 -10.77135 -10.55951 -10.34905 -10.23469 -9.03684 -8.07180 -6.21665 1.41206 1.42936 1.50527 2.43059 2.91834 3.08449 3.19496 3.72737 3.91284 4.01218 4.18413 4.24595 4.26738 4.33912 4.41031 4.45774 4.49894 4.52999 4.58494 4.64444 4.66709 4.76407 4.83021 4.87812 4.91976 4.94881 4.99876 5.03314 5.09979 5.19198 5.28519 5.31183 5.32820 5.37698 5.43960 5.53072 5.62038 5.63757 5.98037 6.14556 6.22958 6.37279 6.48428 6.52727 6.90877 7.46049 8.97453 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028292 B = 0.005202 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.457752 B = 5380.841642 C = 6041.002672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.383 6.383 3 C 0.095 3.905 4 H 0.064 0.936 5 C -0.135 4.135 6 C -0.109 4.109 7 C -0.112 4.112 8 C -0.103 4.103 9 C 0.086 3.914 10 H 0.045 0.955 11 N -0.536 5.536 12 C 0.066 3.934 13 C -0.109 4.109 14 C -0.102 4.102 15 C 0.055 3.945 16 H -0.007 1.007 17 C -0.537 4.537 18 H 0.050 0.950 19 C 0.014 3.986 20 N -0.916 5.916 21 Si 0.955 3.045 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.272 1.272 25 C 0.084 3.916 26 H 0.054 0.946 27 H 0.087 0.913 28 H 0.038 0.962 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.045 0.955 36 H 0.057 0.943 37 H 0.023 0.977 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.047 0.953 41 H 0.022 0.978 42 H 0.057 0.943 43 H 0.260 0.740 44 H 0.055 0.945 45 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.109 5.399 -17.209 19.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.302 6.302 3 C 0.037 3.963 4 H 0.081 0.919 5 C -0.173 4.173 6 C -0.146 4.146 7 C -0.150 4.150 8 C -0.141 4.141 9 C -0.022 4.022 10 H 0.063 0.937 11 N -0.260 5.260 12 C -0.062 4.062 13 C -0.146 4.146 14 C -0.140 4.140 15 C 0.036 3.964 16 H 0.011 0.989 17 C -0.576 4.576 18 H 0.068 0.932 19 C -0.184 4.184 20 N -0.555 5.555 21 Si 0.780 3.220 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.197 1.197 25 C -0.044 4.044 26 H 0.072 0.928 27 H 0.106 0.894 28 H 0.057 0.943 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.041 0.959 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.065 0.935 41 H 0.041 0.959 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -7.173 4.646 -17.055 19.076 hybrid contribution 0.876 0.876 1.208 1.730 sum -6.297 5.521 -15.846 17.923 Atomic orbital electron populations 1.22883 0.80831 1.03184 1.00146 1.88005 1.19996 1.27253 1.94962 1.22215 0.93166 0.85206 0.95755 0.91862 1.22019 1.00986 0.99758 0.94583 1.21392 0.94598 0.99750 0.98856 1.21504 0.97942 1.01524 0.94011 1.21420 0.97735 0.99200 0.95736 1.21802 0.95757 0.96747 0.87865 0.93744 1.61895 1.04878 1.57810 1.01463 1.22087 0.94191 0.94503 0.95374 1.21564 0.97780 1.00237 0.95051 1.21446 0.94990 0.97572 1.00016 1.18558 0.93620 0.93852 0.90395 0.98909 1.21490 1.00193 1.37343 0.98543 0.93153 1.25728 0.99140 0.94718 0.98852 1.70042 1.31068 1.39152 1.15265 0.85667 0.80058 0.78521 0.77728 1.19607 1.20850 1.19700 1.21977 0.90999 0.96759 0.94650 0.92789 0.89400 0.94334 0.90262 0.90332 0.90430 0.92329 0.91637 0.91171 0.93623 0.92379 0.95915 0.89722 0.91303 0.93457 0.95918 0.92437 0.93073 0.92627 0.97074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.68 113.37 1.21 1.74 16 2 O -0.38 -10.55 8.70 -148.98 -1.30 -11.85 16 3 C 0.09 2.35 1.62 30.59 0.05 2.40 16 4 H 0.06 1.50 5.85 -2.39 -0.01 1.49 16 5 C -0.14 -2.54 5.63 30.59 0.17 -2.37 16 6 C -0.11 -2.08 5.78 30.60 0.18 -1.90 16 7 C -0.11 -2.45 5.92 30.60 0.18 -2.27 16 8 C -0.10 -3.06 5.07 30.59 0.16 -2.91 16 9 C 0.09 2.64 1.78 44.92 0.08 2.72 16 10 H 0.04 1.34 8.08 -2.39 -0.02 1.32 16 11 N -0.54 -20.44 4.39 -871.16 -3.82 -24.26 16 12 C 0.07 2.32 4.85 86.33 0.42 2.74 16 13 C -0.11 -4.37 6.09 30.65 0.19 -4.18 16 14 C -0.10 -5.09 5.03 30.68 0.15 -4.93 16 15 C 0.05 2.91 2.26 -11.49 -0.03 2.88 16 16 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 17 C -0.54 -30.79 8.56 25.60 0.22 -30.57 16 18 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 19 C 0.01 0.82 5.30 84.65 0.45 1.27 16 20 N -0.92 -54.59 11.36 21.45 0.24 -54.34 16 21 Si 0.95 44.64 29.54 68.60 2.03 46.67 16 22 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 23 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 24 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 25 C 0.08 3.74 4.53 86.32 0.39 4.13 16 26 H 0.05 0.86 7.87 -2.39 -0.02 0.84 16 27 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.04 0.78 7.15 -2.39 -0.02 0.77 16 29 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.08 1.24 7.87 -2.39 -0.02 1.22 16 31 H 0.08 1.16 8.14 -2.38 -0.02 1.15 16 32 H 0.06 1.28 7.68 -2.39 -0.02 1.26 16 33 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.05 1.48 6.58 -2.39 -0.02 1.47 16 36 H 0.06 1.95 7.68 -2.39 -0.02 1.93 16 37 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.08 2.56 4.58 -2.39 -0.01 2.55 16 39 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.06 3.22 6.16 -2.39 -0.01 3.21 16 43 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 44 H 0.06 2.50 6.40 -2.39 -0.02 2.49 16 45 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -64.00 329.94 1.90 -62.10 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 0.93 Total: 12.94 kcal Atomic # 6 Polarization: -35.07 SS G_CDS: 3.82 Total: -31.25 kcal Atomic # 7 Polarization: -75.03 SS G_CDS: -3.58 Total: -78.61 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: -1.30 Total: -11.85 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -64.00 1.90 -62.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397598858.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.353 kcal (2) G-P(sol) polarization free energy of solvation -63.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds