Wall clock time and date at job start Mon Mar 30 2020 08:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42896 * 113.99818 * 2 1 4 4 H 1.08990 * 109.47408 * 30.00471 * 3 2 1 5 5 C 1.53000 * 109.47145 * 269.99948 * 3 2 1 6 6 C 1.52995 * 109.47389 * 300.00156 * 5 3 2 7 7 C 1.52994 * 109.47575 * 299.99951 * 6 5 3 8 8 C 1.53008 * 109.46941 * 59.99659 * 7 6 5 9 9 C 1.52995 * 109.47265 * 300.00531 * 8 7 6 10 10 H 1.09006 * 109.47234 * 299.99830 * 9 8 7 11 11 N 1.46897 * 109.47435 * 180.02562 * 9 8 7 12 12 C 1.46847 * 111.00053 * 56.51780 * 11 9 8 13 13 C 1.53037 * 109.52124 * 185.84613 * 12 11 9 14 14 C 1.53126 * 109.27850 * 300.82060 * 13 12 11 15 15 C 1.53112 * 109.15890 * 57.65592 * 14 13 12 16 16 H 1.09009 * 109.50490 * 62.28641 * 15 14 13 17 17 C 1.50701 * 109.50471 * 182.36687 * 15 14 13 18 18 H 1.07993 * 120.00608 * 120.00315 * 17 15 14 19 19 C 1.37881 * 119.99396 * 299.99981 * 17 15 14 20 20 N 1.31520 * 119.99281 * 179.97438 * 19 17 15 21 21 Si 1.86794 * 120.00593 * 0.02562 * 19 17 15 22 22 H 1.48502 * 109.47337 * 89.99355 * 21 19 17 23 23 H 1.48496 * 109.47104 * 210.00009 * 21 19 17 24 24 H 1.48507 * 109.46672 * 329.99591 * 21 19 17 25 25 C 1.46843 * 111.00254 * 180.73555 * 11 9 8 26 26 H 1.09000 * 109.46972 * 59.99783 * 1 2 3 27 27 H 1.09006 * 109.47012 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46964 * 299.99613 * 1 2 3 29 29 H 1.09006 * 109.46950 * 179.97438 * 5 3 2 30 30 H 1.09000 * 109.46988 * 60.00521 * 5 3 2 31 31 H 1.09004 * 109.47161 * 179.97438 * 6 5 3 32 32 H 1.09005 * 109.47217 * 60.00535 * 6 5 3 33 33 H 1.09001 * 109.47945 * 179.97438 * 7 6 5 34 34 H 1.09005 * 109.47325 * 300.00517 * 7 6 5 35 35 H 1.08997 * 109.46756 * 60.00793 * 8 7 6 36 36 H 1.09000 * 109.47207 * 180.02562 * 8 7 6 37 37 H 1.08994 * 109.46296 * 305.86062 * 12 11 9 38 38 H 1.08999 * 109.45743 * 65.83161 * 12 11 9 39 39 H 1.08990 * 109.50732 * 60.76259 * 13 12 11 40 40 H 1.09003 * 109.50190 * 180.88604 * 13 12 11 41 41 H 1.08997 * 109.52486 * 177.56448 * 14 13 12 42 42 H 1.08999 * 109.52067 * 297.75296 * 14 13 12 43 43 H 0.97001 * 119.99697 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.46188 * 294.16987 * 25 11 9 45 45 H 1.08995 * 109.46446 * 54.14126 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.1514 0.7974 -2.1638 7 6 4.5001 0.7551 -1.4427 8 6 4.2927 0.2892 -0.0001 9 6 3.3590 1.2631 0.7212 10 1 3.8023 2.2590 0.7212 11 7 3.1603 0.8162 2.1063 12 6 4.4446 0.6847 2.8062 13 6 4.2118 0.0806 4.1929 14 6 3.2669 0.9869 4.9870 15 6 1.9553 1.1464 4.2133 16 1 1.4734 0.1742 4.1095 17 6 1.0415 2.0837 4.9599 18 1 0.7038 2.9962 4.4913 19 6 0.6365 1.7762 6.2415 20 7 -0.1607 2.5945 6.8933 21 14 1.2209 0.1983 7.0526 22 1 2.4887 0.4565 7.7814 23 1 0.1890 -0.2788 8.0079 24 1 1.4496 -0.8372 6.0130 25 6 2.2534 1.7195 2.8259 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.6606 2.7674 -1.4425 30 1 1.2568 1.8015 -1.9563 31 1 3.2988 1.1291 -3.1916 32 1 2.7081 -0.1984 -2.1639 33 1 5.1653 0.0609 -1.9563 34 1 4.9435 1.7509 -1.4426 35 1 3.8495 -0.7066 -0.0002 36 1 5.2535 0.2595 0.5138 37 1 5.1055 0.0345 2.2332 38 1 4.9035 1.6678 2.9106 39 1 3.7655 -0.9083 4.0889 40 1 5.1633 -0.0023 4.7181 41 1 3.0640 0.5387 5.9596 42 1 3.7297 1.9641 5.1247 43 1 -0.4459 2.3780 7.7948 44 1 2.7227 2.6978 2.9303 45 1 1.3231 1.8209 2.2673 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397598859.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:26:53 Heat of formation + Delta-G solvation = -53.922903 kcal Electronic energy + Delta-G solvation = -22389.821693 eV Core-core repulsion = 19406.612835 eV Total energy + Delta-G solvation = -2983.208858 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.84280 -37.63337 -35.77550 -33.56936 -32.00673 -30.67552 -29.81179 -28.59248 -26.12538 -25.01304 -23.72580 -22.56719 -21.27374 -20.61965 -19.43649 -18.80576 -16.78225 -16.45524 -15.71941 -15.34347 -15.07204 -14.51895 -14.15639 -13.88823 -13.72247 -13.51616 -13.10687 -12.91478 -12.87450 -12.40429 -12.35510 -12.03850 -11.93751 -11.69338 -11.19321 -11.10073 -11.00956 -10.99771 -10.69825 -10.44925 -10.28614 -10.16379 -9.90919 -9.79070 -9.50287 -9.17148 -9.02654 -8.85838 -8.47788 -7.67488 -6.04401 -4.03072 3.31338 3.42474 3.46968 4.03370 4.28265 4.45758 4.74732 4.88523 5.01340 5.24415 5.27842 5.33467 5.40839 5.48282 5.51329 5.55590 5.58128 5.64911 5.70563 5.79098 5.82473 5.88686 5.94563 5.98166 6.01431 6.13022 6.17684 6.21638 6.26864 6.33647 6.35919 6.38932 6.50567 6.61036 6.67028 6.88060 6.90426 7.25765 7.47066 7.52564 7.71496 7.73750 7.93528 8.55289 8.98543 9.59030 11.08893 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.025992 B = 0.005988 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.002633 B = 4674.842360 C = 5216.583326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.360 6.360 3 C 0.096 3.904 4 H 0.064 0.936 5 C -0.141 4.141 6 C -0.112 4.112 7 C -0.116 4.116 8 C -0.110 4.110 9 C 0.092 3.908 10 H 0.042 0.958 11 N -0.528 5.528 12 C 0.061 3.939 13 C -0.119 4.119 14 C -0.122 4.122 15 C 0.022 3.978 16 H 0.035 0.965 17 C -0.513 4.513 18 H 0.071 0.929 19 C 0.070 3.930 20 N -0.904 5.904 21 Si 0.888 3.112 22 H -0.281 1.281 23 H -0.299 1.299 24 H -0.263 1.263 25 C 0.076 3.924 26 H 0.030 0.970 27 H 0.080 0.920 28 H 0.046 0.954 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.024 0.976 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.045 0.955 42 H 0.054 0.946 43 H 0.263 0.737 44 H 0.022 0.978 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.738 -4.078 -16.030 18.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.037 3.963 4 H 0.082 0.918 5 C -0.179 4.179 6 C -0.149 4.149 7 C -0.154 4.154 8 C -0.148 4.148 9 C -0.017 4.017 10 H 0.060 0.940 11 N -0.252 5.252 12 C -0.067 4.067 13 C -0.157 4.157 14 C -0.159 4.159 15 C 0.003 3.997 16 H 0.053 0.947 17 C -0.551 4.551 18 H 0.089 0.911 19 C -0.131 4.131 20 N -0.542 5.542 21 Si 0.718 3.282 22 H -0.208 1.208 23 H -0.227 1.227 24 H -0.187 1.187 25 C -0.051 4.051 26 H 0.049 0.951 27 H 0.099 0.901 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.042 0.958 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.040 0.960 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.530 -4.672 -15.872 18.178 hybrid contribution 0.377 0.397 0.698 0.887 sum 7.907 -4.275 -15.174 17.636 Atomic orbital electron populations 1.22745 0.81978 1.02288 0.99613 1.87947 1.18602 1.26545 1.94765 1.22119 0.94564 0.85654 0.93915 0.91809 1.22038 1.00014 0.99285 0.96574 1.21406 0.95366 1.00357 0.97820 1.21520 0.97044 1.00885 0.95994 1.21569 0.98546 1.00491 0.94151 1.21623 0.94128 0.96576 0.89396 0.94015 1.61949 1.12321 1.50688 1.00273 1.22049 0.90861 0.98706 0.95098 1.21645 0.99037 1.00210 0.94769 1.22015 0.97625 0.98153 0.98146 1.19135 0.92496 0.97533 0.90580 0.94653 1.21009 1.27778 1.07111 0.99218 0.91121 1.24977 0.94552 0.96432 0.97121 1.69907 1.34950 1.36903 1.12454 0.86824 0.77270 0.84818 0.79239 1.20766 1.22700 1.18748 1.22110 0.94662 0.92457 0.95833 0.95092 0.90127 0.93549 0.91437 0.91899 0.92706 0.91153 0.92124 0.92556 0.90219 0.92173 0.91390 0.95767 0.91797 0.92957 0.93662 0.92697 0.92750 0.95957 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.82 101.05 1.09 1.50 16 2 O -0.36 -5.55 8.86 -35.23 -0.31 -5.86 16 3 C 0.10 1.37 2.00 -26.73 -0.05 1.32 16 4 H 0.06 0.98 5.91 -51.93 -0.31 0.68 16 5 C -0.14 -1.61 5.63 -26.73 -0.15 -1.76 16 6 C -0.11 -1.19 5.78 -26.74 -0.15 -1.34 16 7 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 8 C -0.11 -1.41 4.73 -26.73 -0.13 -1.54 16 9 C 0.09 1.36 1.73 -67.72 -0.12 1.24 16 10 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 11 N -0.53 -9.40 4.39 -226.70 -1.00 -10.40 16 12 C 0.06 1.01 5.15 -3.83 -0.02 0.99 16 13 C -0.12 -2.16 6.09 -26.65 -0.16 -2.32 16 14 C -0.12 -2.69 4.73 -26.61 -0.13 -2.82 16 15 C 0.02 0.52 1.85 -91.69 -0.17 0.35 16 16 H 0.04 0.90 7.21 -51.92 -0.37 0.53 16 17 C -0.51 -14.46 9.15 -34.44 -0.32 -14.78 16 18 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 19 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 20 N -0.90 -27.86 13.96 55.43 0.77 -27.08 16 21 Si 0.89 22.46 24.35 -169.99 -4.14 18.32 16 22 H -0.28 -6.92 6.89 56.52 0.39 -6.53 16 23 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 24 H -0.26 -6.45 6.53 56.52 0.37 -6.08 16 25 C 0.08 1.57 4.43 -3.83 -0.02 1.56 16 26 H 0.03 0.35 7.87 -51.93 -0.41 -0.06 16 27 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.05 0.68 8.08 -51.93 -0.42 0.26 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.68 7.87 -51.93 -0.41 0.27 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.82 7.68 -51.93 -0.40 0.42 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.08 1.15 7.68 -51.93 -0.40 0.75 16 36 H 0.06 0.74 6.22 -51.93 -0.32 0.42 16 37 H 0.07 0.99 5.92 -51.93 -0.31 0.68 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.05 1.06 3.34 -51.93 -0.17 0.89 16 42 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 1.34 5.99 -51.93 -0.31 1.02 16 LS Contribution 325.19 15.07 4.90 4.90 Total: -1.00 -30.26 325.19 -8.43 -38.69 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -8.08 Total: -1.51 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: -0.57 Total: -17.05 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: -0.22 Total: -37.48 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.31 Total: -5.86 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.14 Total: 18.32 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.26 -8.43 -38.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397598859.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.235 kcal (2) G-P(sol) polarization free energy of solvation -30.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds