Wall clock time and date at job start Mon Mar 30 2020 08:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42896 * 113.99818 * 2 1 4 4 H 1.08990 * 109.47408 * 30.00471 * 3 2 1 5 5 C 1.53000 * 109.47145 * 269.99948 * 3 2 1 6 6 C 1.52995 * 109.47389 * 300.00156 * 5 3 2 7 7 C 1.52994 * 109.47575 * 299.99951 * 6 5 3 8 8 C 1.53008 * 109.46941 * 59.99659 * 7 6 5 9 9 C 1.52995 * 109.47265 * 300.00531 * 8 7 6 10 10 H 1.09006 * 109.47234 * 299.99830 * 9 8 7 11 11 N 1.46897 * 109.47435 * 180.02562 * 9 8 7 12 12 C 1.46847 * 111.00053 * 56.51780 * 11 9 8 13 13 C 1.53037 * 109.52124 * 185.84613 * 12 11 9 14 14 C 1.53126 * 109.27850 * 300.82060 * 13 12 11 15 15 C 1.53112 * 109.15890 * 57.65592 * 14 13 12 16 16 H 1.09009 * 109.50490 * 62.28641 * 15 14 13 17 17 C 1.50701 * 109.50471 * 182.36687 * 15 14 13 18 18 H 1.07993 * 120.00608 * 120.00315 * 17 15 14 19 19 C 1.37881 * 119.99396 * 299.99981 * 17 15 14 20 20 N 1.31520 * 119.99281 * 179.97438 * 19 17 15 21 21 Si 1.86794 * 120.00593 * 0.02562 * 19 17 15 22 22 H 1.48502 * 109.47337 * 89.99355 * 21 19 17 23 23 H 1.48496 * 109.47104 * 210.00009 * 21 19 17 24 24 H 1.48507 * 109.46672 * 329.99591 * 21 19 17 25 25 C 1.46843 * 111.00254 * 180.73555 * 11 9 8 26 26 H 1.09000 * 109.46972 * 59.99783 * 1 2 3 27 27 H 1.09006 * 109.47012 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46964 * 299.99613 * 1 2 3 29 29 H 1.09006 * 109.46950 * 179.97438 * 5 3 2 30 30 H 1.09000 * 109.46988 * 60.00521 * 5 3 2 31 31 H 1.09004 * 109.47161 * 179.97438 * 6 5 3 32 32 H 1.09005 * 109.47217 * 60.00535 * 6 5 3 33 33 H 1.09001 * 109.47945 * 179.97438 * 7 6 5 34 34 H 1.09005 * 109.47325 * 300.00517 * 7 6 5 35 35 H 1.08997 * 109.46756 * 60.00793 * 8 7 6 36 36 H 1.09000 * 109.47207 * 180.02562 * 8 7 6 37 37 H 1.08994 * 109.46296 * 305.86062 * 12 11 9 38 38 H 1.08999 * 109.45743 * 65.83161 * 12 11 9 39 39 H 1.08990 * 109.50732 * 60.76259 * 13 12 11 40 40 H 1.09003 * 109.50190 * 180.88604 * 13 12 11 41 41 H 1.08997 * 109.52486 * 177.56448 * 14 13 12 42 42 H 1.08999 * 109.52067 * 297.75296 * 14 13 12 43 43 H 0.97001 * 119.99697 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.46188 * 294.16987 * 25 11 9 45 45 H 1.08995 * 109.46446 * 54.14126 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.1514 0.7974 -2.1638 7 6 4.5001 0.7551 -1.4427 8 6 4.2927 0.2892 -0.0001 9 6 3.3590 1.2631 0.7212 10 1 3.8023 2.2590 0.7212 11 7 3.1603 0.8162 2.1063 12 6 4.4446 0.6847 2.8062 13 6 4.2118 0.0806 4.1929 14 6 3.2669 0.9869 4.9870 15 6 1.9553 1.1464 4.2133 16 1 1.4734 0.1742 4.1095 17 6 1.0415 2.0837 4.9599 18 1 0.7038 2.9962 4.4913 19 6 0.6365 1.7762 6.2415 20 7 -0.1607 2.5945 6.8933 21 14 1.2209 0.1983 7.0526 22 1 2.4887 0.4565 7.7814 23 1 0.1890 -0.2788 8.0079 24 1 1.4496 -0.8372 6.0130 25 6 2.2534 1.7195 2.8259 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.6606 2.7674 -1.4425 30 1 1.2568 1.8015 -1.9563 31 1 3.2988 1.1291 -3.1916 32 1 2.7081 -0.1984 -2.1639 33 1 5.1653 0.0609 -1.9563 34 1 4.9435 1.7509 -1.4426 35 1 3.8495 -0.7066 -0.0002 36 1 5.2535 0.2595 0.5138 37 1 5.1055 0.0345 2.2332 38 1 4.9035 1.6678 2.9106 39 1 3.7655 -0.9083 4.0889 40 1 5.1633 -0.0023 4.7181 41 1 3.0640 0.5387 5.9596 42 1 3.7297 1.9641 5.1247 43 1 -0.4459 2.3780 7.7948 44 1 2.7227 2.6978 2.9303 45 1 1.3231 1.8209 2.2673 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397598859.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:26:53 Heat of formation + Delta-G solvation = -73.639695 kcal Electronic energy + Delta-G solvation = -22390.676677 eV Core-core repulsion = 19406.612835 eV Total energy + Delta-G solvation = -2984.063842 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.05792 -39.05136 -36.89602 -35.30072 -33.77954 -32.21386 -31.03155 -29.80392 -27.24116 -26.91630 -25.15028 -23.87974 -22.43940 -22.08334 -20.54753 -20.42557 -18.84651 -17.80194 -16.93301 -16.58132 -16.47455 -15.89045 -15.67810 -15.34205 -15.08254 -14.83553 -14.67923 -14.25902 -14.19262 -14.02865 -13.63665 -13.33780 -13.16843 -12.93877 -12.81307 -12.56615 -12.30629 -12.23944 -12.07013 -11.90298 -11.75870 -11.50259 -11.41413 -11.33029 -11.06112 -10.93323 -10.62745 -10.54475 -10.26186 -9.09684 -8.32046 -6.35143 1.28138 1.34852 1.46321 2.31544 2.89207 3.01803 3.04074 3.72167 3.91608 3.97888 4.05809 4.18250 4.22206 4.28425 4.37727 4.42067 4.43902 4.48827 4.52086 4.58841 4.62568 4.70260 4.74419 4.79491 4.84111 4.90714 4.93422 4.96057 5.01007 5.10956 5.14968 5.24341 5.27581 5.31740 5.35375 5.38961 5.45581 5.61707 5.64352 5.73015 6.18863 6.29126 6.36950 6.46473 6.71837 7.30622 8.84843 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.025992 B = 0.005988 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.002633 B = 4674.842360 C = 5216.583326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.376 6.376 3 C 0.092 3.908 4 H 0.041 0.959 5 C -0.136 4.136 6 C -0.109 4.109 7 C -0.112 4.112 8 C -0.103 4.103 9 C 0.088 3.912 10 H 0.045 0.955 11 N -0.536 5.536 12 C 0.060 3.940 13 C -0.113 4.113 14 C -0.122 4.122 15 C 0.023 3.977 16 H 0.020 0.980 17 C -0.518 4.518 18 H 0.031 0.969 19 C 0.015 3.985 20 N -0.950 5.950 21 Si 0.951 3.049 22 H -0.266 1.266 23 H -0.298 1.298 24 H -0.251 1.251 25 C 0.091 3.909 26 H 0.051 0.949 27 H 0.093 0.907 28 H 0.022 0.978 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.028 0.972 39 H 0.060 0.940 40 H 0.083 0.917 41 H 0.034 0.966 42 H 0.048 0.952 43 H 0.266 0.734 44 H 0.011 0.989 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.163 -5.626 -17.722 21.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.295 6.295 3 C 0.034 3.966 4 H 0.059 0.941 5 C -0.174 4.174 6 C -0.146 4.146 7 C -0.150 4.150 8 C -0.140 4.140 9 C -0.020 4.020 10 H 0.063 0.937 11 N -0.260 5.260 12 C -0.068 4.068 13 C -0.151 4.151 14 C -0.159 4.159 15 C 0.004 3.996 16 H 0.038 0.962 17 C -0.557 4.557 18 H 0.050 0.950 19 C -0.182 4.182 20 N -0.590 5.590 21 Si 0.778 3.222 22 H -0.192 1.192 23 H -0.226 1.226 24 H -0.175 1.175 25 C -0.037 4.037 26 H 0.070 0.930 27 H 0.111 0.889 28 H 0.041 0.959 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.116 0.884 38 H 0.046 0.954 39 H 0.079 0.921 40 H 0.101 0.899 41 H 0.052 0.948 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.029 0.971 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.973 -6.221 -17.589 21.155 hybrid contribution -0.447 0.962 1.173 1.582 sum 9.526 -5.258 -16.416 19.695 Atomic orbital electron populations 1.22801 0.81269 1.03100 0.99461 1.87907 1.19446 1.27184 1.94946 1.22187 0.93861 0.84895 0.95668 0.94076 1.22010 1.00921 0.99965 0.94536 1.21394 0.94989 0.99427 0.98818 1.21514 0.97349 1.01815 0.94336 1.21521 0.97999 0.98896 0.95614 1.21781 0.95124 0.97393 0.87744 0.93708 1.61917 1.12790 1.49745 1.01570 1.22141 0.90551 0.99477 0.94582 1.21622 0.99296 0.98847 0.95331 1.21917 0.97273 0.98881 0.97861 1.19026 0.92749 0.95504 0.92318 0.96201 1.21314 1.28328 1.06480 0.99538 0.95045 1.25809 0.94688 0.99861 0.97814 1.70048 1.36727 1.39159 1.13081 0.85805 0.77205 0.80782 0.78409 1.19190 1.22634 1.17538 1.21761 0.95214 0.92290 0.94411 0.93012 0.88865 0.95919 0.90486 0.91270 0.90605 0.92237 0.90377 0.91590 0.91765 0.91172 0.88372 0.95416 0.92111 0.89855 0.94787 0.93322 0.92555 0.97068 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 10.82 113.37 1.23 2.03 16 2 O -0.38 -11.36 8.86 -148.98 -1.32 -12.68 16 3 C 0.09 2.57 2.00 30.60 0.06 2.64 16 4 H 0.04 1.31 5.91 -2.39 -0.01 1.30 16 5 C -0.14 -2.85 5.63 30.59 0.17 -2.68 16 6 C -0.11 -1.98 5.78 30.59 0.18 -1.80 16 7 C -0.11 -1.97 5.92 30.60 0.18 -1.79 16 8 C -0.10 -2.34 4.73 30.60 0.14 -2.20 16 9 C 0.09 2.47 1.73 44.91 0.08 2.55 16 10 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 11 N -0.54 -18.50 4.39 -871.14 -3.83 -22.32 16 12 C 0.06 1.82 5.15 86.33 0.44 2.27 16 13 C -0.11 -3.81 6.09 30.65 0.19 -3.62 16 14 C -0.12 -5.26 4.73 30.67 0.15 -5.12 16 15 C 0.02 1.13 1.85 -11.49 -0.02 1.11 16 16 H 0.02 1.03 7.21 -2.38 -0.02 1.01 16 17 C -0.52 -30.45 9.15 25.60 0.23 -30.21 16 18 H 0.03 2.03 7.99 -2.91 -0.02 2.00 16 19 C 0.02 0.91 5.45 84.65 0.46 1.37 16 20 N -0.95 -60.54 13.96 21.45 0.30 -60.24 16 21 Si 0.95 46.76 24.35 68.60 1.67 48.43 16 22 H -0.27 -12.38 6.89 99.48 0.69 -11.69 16 23 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 24 H -0.25 -11.78 6.53 99.48 0.65 -11.13 16 25 C 0.09 3.83 4.43 86.33 0.38 4.21 16 26 H 0.05 1.14 7.87 -2.39 -0.02 1.12 16 27 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 28 H 0.02 0.69 8.08 -2.39 -0.02 0.67 16 29 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.07 1.35 7.87 -2.39 -0.02 1.34 16 31 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.06 1.23 7.68 -2.38 -0.02 1.21 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 34 H 0.07 1.06 8.14 -2.38 -0.02 1.05 16 35 H 0.06 1.69 7.68 -2.39 -0.02 1.67 16 36 H 0.07 1.45 6.22 -2.39 -0.01 1.44 16 37 H 0.10 2.45 5.92 -2.39 -0.01 2.44 16 38 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.03 1.53 3.34 -2.39 -0.01 1.53 16 42 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 44 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.05 2.33 5.99 -2.39 -0.01 2.32 16 Total: -1.00 -67.28 325.19 1.55 -65.73 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: 0.86 Total: 12.31 kcal Atomic # 6 Polarization: -35.11 SS G_CDS: 3.87 Total: -31.23 kcal Atomic # 7 Polarization: -79.03 SS G_CDS: -3.53 Total: -82.56 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -1.32 Total: -12.68 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.67 Total: 48.43 kcal Total: -67.28 1.55 -65.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397598859.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.912 kcal (2) G-P(sol) polarization free energy of solvation -67.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds