Wall clock time and date at job start Mon Mar 30 2020 08:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42905 * 113.99968 * 2 1 4 4 H 1.09001 * 109.47108 * 30.00240 * 3 2 1 5 5 C 1.52997 * 109.46921 * 270.00062 * 3 2 1 6 6 C 1.53006 * 109.47164 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47127 * 59.99836 * 6 5 3 8 8 C 1.53000 * 109.47060 * 300.00449 * 7 6 5 9 9 C 1.52996 * 109.47328 * 60.00126 * 8 7 6 10 10 H 1.08992 * 109.47554 * 59.99639 * 9 8 7 11 11 N 1.46899 * 109.46973 * 179.97438 * 9 8 7 12 12 C 1.46849 * 111.00187 * 59.20716 * 11 9 8 13 13 C 1.53043 * 109.52399 * 174.15767 * 12 11 9 14 14 C 1.53119 * 109.27306 * 59.18245 * 13 12 11 15 15 C 1.53117 * 109.16175 * 302.34348 * 14 13 12 16 16 H 1.09000 * 109.49994 * 297.71632 * 15 14 13 17 17 C 1.50698 * 109.53381 * 177.61952 * 15 14 13 18 18 H 1.08005 * 120.00086 * 240.17220 * 17 15 14 19 19 C 1.37881 * 120.00278 * 60.17762 * 17 15 14 20 20 N 1.31510 * 119.99951 * 359.97438 * 19 17 15 21 21 Si 1.86793 * 119.99967 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47489 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.46980 * 120.00093 * 21 19 17 24 24 H 1.48502 * 109.47271 * 239.99814 * 21 19 17 25 25 C 1.46845 * 111.00262 * 294.99957 * 11 9 8 26 26 H 1.08991 * 109.47470 * 59.99817 * 1 2 3 27 27 H 1.08998 * 109.46728 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47056 * 299.99705 * 1 2 3 29 29 H 1.09001 * 109.47375 * 300.00014 * 5 3 2 30 30 H 1.09000 * 109.47140 * 60.00032 * 5 3 2 31 31 H 1.08998 * 109.46505 * 299.99708 * 6 5 3 32 32 H 1.08996 * 109.46884 * 180.02562 * 6 5 3 33 33 H 1.09002 * 109.47153 * 180.02562 * 7 6 5 34 34 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 35 35 H 1.09004 * 109.46724 * 180.02562 * 8 7 6 36 36 H 1.09001 * 109.47194 * 299.99650 * 8 7 6 37 37 H 1.08996 * 109.46167 * 294.17731 * 12 11 9 38 38 H 1.09009 * 109.46191 * 54.14803 * 12 11 9 39 39 H 1.08995 * 109.50233 * 299.24045 * 13 12 11 40 40 H 1.08996 * 109.50156 * 179.11866 * 13 12 11 41 41 H 1.09002 * 109.51625 * 182.44214 * 14 13 12 42 42 H 1.08994 * 109.58061 * 62.28278 * 14 13 12 43 43 H 0.97000 * 120.00701 * 180.02562 * 20 19 17 44 44 H 1.09003 * 109.45640 * 305.85383 * 25 11 9 45 45 H 1.08996 * 109.46357 * 65.83100 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2176 1.7714 -1.4425 6 6 2.8393 3.1694 -1.4426 7 6 4.1879 3.1279 -0.7211 8 6 3.9804 2.6619 0.7214 9 6 3.3588 1.2639 0.7214 10 1 4.0244 0.5703 0.2077 11 7 3.1603 0.8164 2.1064 12 6 2.2820 1.7391 2.8368 13 6 1.9807 1.1680 4.2244 14 6 3.2943 0.9729 4.9867 15 6 4.2099 0.0467 4.1815 16 1 3.7383 -0.9304 4.0774 17 6 5.5281 -0.1044 4.8961 18 1 6.4436 0.1996 4.4104 19 6 5.5654 -0.6308 6.1699 20 7 4.4506 -1.0005 6.7616 21 14 7.1994 -0.8187 7.0553 22 1 8.2958 -0.3332 6.1793 23 1 7.1775 -0.0229 8.3089 24 1 7.4240 -2.2499 7.3815 25 6 4.4464 0.6503 2.7953 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.8828 1.0775 -1.9564 30 1 1.2567 1.8014 -1.9563 31 1 2.1736 3.8630 -0.9289 32 1 2.9866 3.5014 -2.4702 33 1 4.6306 4.1239 -0.7208 34 1 4.8535 2.4342 -1.2349 35 1 4.9412 2.6328 1.2354 36 1 3.3148 3.3556 1.2351 37 1 2.7762 2.7050 2.9411 38 1 1.3498 1.8658 2.2861 39 1 1.4741 0.2085 4.1208 40 1 1.3416 1.8605 4.7720 41 1 3.0880 0.5258 5.9592 42 1 3.7828 1.9374 5.1254 43 1 4.4767 -1.3705 7.6579 44 1 5.0864 -0.0138 2.2144 45 1 4.9304 1.6213 2.8999 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397598860.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:26:57 Heat of formation + Delta-G solvation = -63.459737 kcal Electronic energy + Delta-G solvation = -22173.674023 eV Core-core repulsion = 19190.051617 eV Total energy + Delta-G solvation = -2983.622406 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.87451 -37.39913 -36.06798 -33.51083 -31.73358 -30.08924 -29.79956 -28.26029 -26.16017 -24.94211 -23.52964 -22.30338 -21.51716 -21.04742 -19.51355 -18.18805 -16.64328 -16.31967 -15.67512 -15.07979 -14.83025 -14.48927 -14.19154 -13.91053 -13.73684 -13.40625 -13.15655 -12.86630 -12.77006 -12.23830 -12.16991 -11.94564 -11.60787 -11.52897 -11.15366 -10.96161 -10.88764 -10.75173 -10.66429 -10.63080 -10.56687 -10.07584 -9.98330 -9.73973 -9.39698 -9.27818 -8.89295 -8.62802 -8.24812 -7.44681 -5.92252 -3.97996 3.32952 3.40935 3.44629 3.90854 4.37763 4.53903 4.72737 4.93253 5.00614 5.15557 5.22465 5.30999 5.37947 5.41031 5.47732 5.50457 5.55106 5.68400 5.72047 5.82227 5.87266 5.89787 5.98744 6.05637 6.11056 6.12602 6.15817 6.23751 6.37899 6.44452 6.51764 6.60249 6.78793 6.82878 7.05813 7.29413 7.43648 7.49778 7.77316 7.81900 7.94461 8.16678 8.24382 8.54872 9.06578 9.65980 11.13830 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.026664 B = 0.005181 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.841744 B = 5402.616857 C = 5917.449148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.364 6.364 3 C 0.100 3.900 4 H 0.058 0.942 5 C -0.141 4.141 6 C -0.116 4.116 7 C -0.116 4.116 8 C -0.153 4.153 9 C 0.090 3.910 10 H 0.084 0.916 11 N -0.521 5.521 12 C 0.060 3.940 13 C -0.116 4.116 14 C -0.109 4.109 15 C 0.055 3.945 16 H 0.034 0.966 17 C -0.512 4.512 18 H 0.053 0.947 19 C 0.062 3.938 20 N -0.889 5.889 21 Si 0.889 3.111 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.285 1.285 25 C 0.068 3.932 26 H 0.031 0.969 27 H 0.082 0.918 28 H 0.039 0.961 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.024 0.976 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.043 0.957 41 H 0.089 0.911 42 H 0.028 0.972 43 H 0.258 0.742 44 H 0.057 0.943 45 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.531 7.745 -14.316 17.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.282 6.282 3 C 0.041 3.959 4 H 0.076 0.924 5 C -0.179 4.179 6 C -0.153 4.153 7 C -0.155 4.155 8 C -0.192 4.192 9 C -0.020 4.020 10 H 0.102 0.898 11 N -0.244 5.244 12 C -0.068 4.068 13 C -0.154 4.154 14 C -0.147 4.147 15 C 0.036 3.964 16 H 0.052 0.948 17 C -0.551 4.551 18 H 0.071 0.929 19 C -0.139 4.139 20 N -0.528 5.528 21 Si 0.717 3.283 22 H -0.199 1.199 23 H -0.212 1.212 24 H -0.211 1.211 25 C -0.059 4.059 26 H 0.049 0.951 27 H 0.100 0.900 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.042 0.958 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.108 0.892 42 H 0.047 0.953 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -6.712 7.019 -14.140 17.154 hybrid contribution 1.021 0.966 0.566 1.515 sum -5.691 7.985 -13.574 16.745 Atomic orbital electron populations 1.22702 0.82170 1.02338 0.99100 1.88010 1.18505 1.26959 1.94743 1.22156 0.94807 0.84896 0.94021 0.92417 1.22053 1.01120 0.97103 0.97623 1.21492 0.96976 0.96544 1.00324 1.21506 0.97011 1.01098 0.95835 1.22244 1.02012 0.98110 0.96854 1.21744 0.94756 0.94365 0.91107 0.89805 1.62154 1.15568 1.46631 1.00025 1.22075 0.95646 0.93556 0.95509 1.21665 0.99776 0.99923 0.94070 1.21631 0.92834 0.98628 1.01619 1.18659 0.94863 0.94900 0.87991 0.94769 1.21196 0.92828 1.41104 0.99937 0.92872 1.24930 0.96078 0.95387 0.97463 1.69905 1.25819 1.42889 1.14149 0.86593 0.84400 0.77685 0.79632 1.19891 1.21164 1.21071 1.22303 0.87796 0.98327 0.97426 0.95052 0.89976 0.94277 0.91059 0.92078 0.92184 0.91916 0.92130 0.91799 0.90870 0.91774 0.95810 0.92905 0.92130 0.93831 0.89244 0.95304 0.93188 0.92435 0.96197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.82 101.05 1.09 1.50 16 2 O -0.36 -5.68 10.21 -35.23 -0.36 -6.04 16 3 C 0.10 1.38 1.74 -26.73 -0.05 1.33 16 4 H 0.06 0.79 5.94 -51.93 -0.31 0.48 16 5 C -0.14 -1.58 5.54 -26.73 -0.15 -1.73 16 6 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 7 C -0.12 -1.27 5.92 -26.73 -0.16 -1.43 16 8 C -0.15 -2.10 4.51 -26.73 -0.12 -2.22 16 9 C 0.09 1.41 1.92 -67.71 -0.13 1.28 16 10 H 0.08 1.39 8.08 -51.93 -0.42 0.97 16 11 N -0.52 -9.91 4.51 -226.70 -1.02 -10.94 16 12 C 0.06 1.08 4.63 -3.83 -0.02 1.06 16 13 C -0.12 -2.34 6.09 -26.65 -0.16 -2.51 16 14 C -0.11 -2.63 5.03 -26.61 -0.13 -2.76 16 15 C 0.05 1.40 2.26 -91.70 -0.21 1.19 16 16 H 0.03 0.98 8.14 -51.93 -0.42 0.56 16 17 C -0.51 -14.23 8.56 -34.44 -0.29 -14.52 16 18 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 19 C 0.06 1.75 5.31 -17.82 -0.09 1.65 16 20 N -0.89 -25.72 11.36 55.43 0.63 -25.09 16 21 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 C 0.07 1.48 4.25 -3.84 -0.02 1.46 16 26 H 0.03 0.31 7.87 -51.93 -0.41 -0.10 16 27 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.04 0.47 8.08 -51.93 -0.42 0.05 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.62 7.87 -51.93 -0.41 0.21 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 1.10 6.65 -51.93 -0.35 0.75 16 36 H 0.06 0.89 6.52 -51.93 -0.34 0.55 16 37 H 0.02 0.42 6.62 -51.93 -0.34 0.08 16 38 H 0.05 0.86 6.03 -51.92 -0.31 0.54 16 39 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 40 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 2.41 6.16 -51.93 -0.32 2.09 16 42 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.06 1.26 8.08 -51.93 -0.42 0.84 16 45 H 0.02 0.43 6.73 -51.93 -0.35 0.08 16 LS Contribution 331.56 15.07 5.00 5.00 Total: -1.00 -29.07 331.56 -9.54 -38.61 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -8.16 Total: -1.03 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -0.60 Total: -16.99 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: -0.39 Total: -36.03 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -0.36 Total: -6.04 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.07 -9.54 -38.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397598860.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.849 kcal (2) G-P(sol) polarization free energy of solvation -29.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds