Wall clock time and date at job start Mon Mar 30 2020 08:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42905 * 113.99968 * 2 1 4 4 H 1.09001 * 109.47108 * 30.00240 * 3 2 1 5 5 C 1.52997 * 109.46921 * 270.00062 * 3 2 1 6 6 C 1.53006 * 109.47164 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47127 * 59.99836 * 6 5 3 8 8 C 1.53000 * 109.47060 * 300.00449 * 7 6 5 9 9 C 1.52996 * 109.47328 * 60.00126 * 8 7 6 10 10 H 1.08992 * 109.47554 * 59.99639 * 9 8 7 11 11 N 1.46899 * 109.46973 * 179.97438 * 9 8 7 12 12 C 1.46849 * 111.00187 * 59.20716 * 11 9 8 13 13 C 1.53043 * 109.52399 * 174.15767 * 12 11 9 14 14 C 1.53119 * 109.27306 * 59.18245 * 13 12 11 15 15 C 1.53117 * 109.16175 * 302.34348 * 14 13 12 16 16 H 1.09000 * 109.49994 * 297.71632 * 15 14 13 17 17 C 1.50698 * 109.53381 * 177.61952 * 15 14 13 18 18 H 1.08005 * 120.00086 * 240.17220 * 17 15 14 19 19 C 1.37881 * 120.00278 * 60.17762 * 17 15 14 20 20 N 1.31510 * 119.99951 * 359.97438 * 19 17 15 21 21 Si 1.86793 * 119.99967 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47489 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.46980 * 120.00093 * 21 19 17 24 24 H 1.48502 * 109.47271 * 239.99814 * 21 19 17 25 25 C 1.46845 * 111.00262 * 294.99957 * 11 9 8 26 26 H 1.08991 * 109.47470 * 59.99817 * 1 2 3 27 27 H 1.08998 * 109.46728 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47056 * 299.99705 * 1 2 3 29 29 H 1.09001 * 109.47375 * 300.00014 * 5 3 2 30 30 H 1.09000 * 109.47140 * 60.00032 * 5 3 2 31 31 H 1.08998 * 109.46505 * 299.99708 * 6 5 3 32 32 H 1.08996 * 109.46884 * 180.02562 * 6 5 3 33 33 H 1.09002 * 109.47153 * 180.02562 * 7 6 5 34 34 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 35 35 H 1.09004 * 109.46724 * 180.02562 * 8 7 6 36 36 H 1.09001 * 109.47194 * 299.99650 * 8 7 6 37 37 H 1.08996 * 109.46167 * 294.17731 * 12 11 9 38 38 H 1.09009 * 109.46191 * 54.14803 * 12 11 9 39 39 H 1.08995 * 109.50233 * 299.24045 * 13 12 11 40 40 H 1.08996 * 109.50156 * 179.11866 * 13 12 11 41 41 H 1.09002 * 109.51625 * 182.44214 * 14 13 12 42 42 H 1.08994 * 109.58061 * 62.28278 * 14 13 12 43 43 H 0.97000 * 120.00701 * 180.02562 * 20 19 17 44 44 H 1.09003 * 109.45640 * 305.85383 * 25 11 9 45 45 H 1.08996 * 109.46357 * 65.83100 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2176 1.7714 -1.4425 6 6 2.8393 3.1694 -1.4426 7 6 4.1879 3.1279 -0.7211 8 6 3.9804 2.6619 0.7214 9 6 3.3588 1.2639 0.7214 10 1 4.0244 0.5703 0.2077 11 7 3.1603 0.8164 2.1064 12 6 2.2820 1.7391 2.8368 13 6 1.9807 1.1680 4.2244 14 6 3.2943 0.9729 4.9867 15 6 4.2099 0.0467 4.1815 16 1 3.7383 -0.9304 4.0774 17 6 5.5281 -0.1044 4.8961 18 1 6.4436 0.1996 4.4104 19 6 5.5654 -0.6308 6.1699 20 7 4.4506 -1.0005 6.7616 21 14 7.1994 -0.8187 7.0553 22 1 8.2958 -0.3332 6.1793 23 1 7.1775 -0.0229 8.3089 24 1 7.4240 -2.2499 7.3815 25 6 4.4464 0.6503 2.7953 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.8828 1.0775 -1.9564 30 1 1.2567 1.8014 -1.9563 31 1 2.1736 3.8630 -0.9289 32 1 2.9866 3.5014 -2.4702 33 1 4.6306 4.1239 -0.7208 34 1 4.8535 2.4342 -1.2349 35 1 4.9412 2.6328 1.2354 36 1 3.3148 3.3556 1.2351 37 1 2.7762 2.7050 2.9411 38 1 1.3498 1.8658 2.2861 39 1 1.4741 0.2085 4.1208 40 1 1.3416 1.8605 4.7720 41 1 3.0880 0.5258 5.9592 42 1 3.7828 1.9374 5.1254 43 1 4.4767 -1.3705 7.6579 44 1 5.0864 -0.0138 2.2144 45 1 4.9304 1.6213 2.8999 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397598860.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:26:56 Heat of formation + Delta-G solvation = -80.949930 kcal Electronic energy + Delta-G solvation = -22174.432455 eV Core-core repulsion = 19190.051617 eV Total energy + Delta-G solvation = -2984.380838 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.12423 -38.83630 -37.18725 -35.30846 -33.43372 -31.74837 -30.97232 -29.54708 -27.17352 -26.92321 -24.97931 -23.61462 -23.04292 -22.22302 -20.86775 -19.80239 -18.47950 -17.54258 -17.12093 -16.49962 -16.13485 -15.95929 -15.49382 -15.20280 -15.07996 -14.67887 -14.59221 -14.30685 -14.09161 -13.89042 -13.55089 -13.28649 -13.05715 -12.87845 -12.70044 -12.52626 -12.49446 -12.15565 -11.96527 -11.83311 -11.69666 -11.59095 -11.50449 -11.37392 -11.19466 -10.77097 -10.64509 -10.36890 -10.24142 -8.94669 -8.07498 -6.21795 1.39901 1.41329 1.52971 2.42885 2.89185 3.08407 3.19326 3.73508 3.93771 4.04480 4.12507 4.16220 4.24581 4.30351 4.33632 4.40991 4.46346 4.52688 4.59572 4.61199 4.64100 4.71043 4.84413 4.88036 4.91211 4.94009 4.98842 5.05859 5.12455 5.16412 5.17769 5.22218 5.25626 5.32906 5.40191 5.48511 5.53172 5.63796 5.98407 6.15071 6.23490 6.38057 6.48208 6.52276 6.91242 7.46049 8.97538 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.026664 B = 0.005181 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.841744 B = 5402.616857 C = 5917.449148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.397 6.397 3 C 0.102 3.898 4 H 0.063 0.937 5 C -0.135 4.135 6 C -0.111 4.111 7 C -0.113 4.113 8 C -0.147 4.147 9 C 0.087 3.913 10 H 0.068 0.932 11 N -0.536 5.536 12 C 0.067 3.933 13 C -0.110 4.110 14 C -0.101 4.101 15 C 0.053 3.947 16 H -0.009 1.009 17 C -0.534 4.534 18 H 0.050 0.950 19 C 0.014 3.986 20 N -0.916 5.916 21 Si 0.955 3.045 22 H -0.267 1.267 23 H -0.279 1.279 24 H -0.281 1.281 25 C 0.086 3.914 26 H 0.055 0.945 27 H 0.087 0.913 28 H 0.038 0.962 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.031 0.969 38 H 0.079 0.921 39 H 0.045 0.955 40 H 0.069 0.931 41 H 0.056 0.944 42 H 0.024 0.976 43 H 0.260 0.740 44 H 0.046 0.954 45 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.942 9.512 -15.897 19.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.316 6.316 3 C 0.044 3.956 4 H 0.081 0.919 5 C -0.173 4.173 6 C -0.148 4.148 7 C -0.151 4.151 8 C -0.186 4.186 9 C -0.021 4.021 10 H 0.086 0.914 11 N -0.259 5.259 12 C -0.061 4.061 13 C -0.148 4.148 14 C -0.139 4.139 15 C 0.034 3.966 16 H 0.009 0.991 17 C -0.573 4.573 18 H 0.068 0.932 19 C -0.185 4.185 20 N -0.556 5.556 21 Si 0.781 3.219 22 H -0.192 1.192 23 H -0.205 1.205 24 H -0.207 1.207 25 C -0.042 4.042 26 H 0.073 0.927 27 H 0.105 0.895 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.050 0.950 38 H 0.097 0.903 39 H 0.064 0.936 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.043 0.957 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -7.131 8.796 -15.742 19.391 hybrid contribution 1.117 0.358 1.056 1.578 sum -6.014 9.153 -14.685 18.320 Atomic orbital electron populations 1.22854 0.80492 1.03152 1.00196 1.87967 1.20486 1.28121 1.95032 1.22188 0.93328 0.84516 0.95596 0.91880 1.22010 1.02051 0.97686 0.95542 1.21487 0.96034 0.95751 1.01539 1.21495 0.98071 1.01745 0.93762 1.22157 1.00784 0.96757 0.98906 1.21836 0.96314 0.95142 0.88841 0.91392 1.62058 1.14102 1.48133 1.01614 1.22031 0.96581 0.93211 0.94234 1.21578 0.97669 1.00105 0.95422 1.21424 0.94691 0.97423 1.00358 1.18576 0.94076 0.93409 0.90508 0.99119 1.21542 0.93657 1.41498 1.00591 0.93153 1.25728 0.99566 0.94988 0.98214 1.70050 1.27833 1.43284 1.14432 0.85554 0.80233 0.77700 0.78446 1.19171 1.20456 1.20674 1.21916 0.89262 0.97628 0.95384 0.92655 0.89491 0.94347 0.91700 0.90397 0.91368 0.89743 0.90595 0.91917 0.92739 0.91463 0.95043 0.90293 0.93615 0.91248 0.92518 0.95744 0.93088 0.93537 0.96107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 10.82 113.37 1.23 1.88 16 2 O -0.40 -11.89 10.21 -148.98 -1.52 -13.41 16 3 C 0.10 2.61 1.74 30.59 0.05 2.67 16 4 H 0.06 1.54 5.94 -2.39 -0.01 1.53 16 5 C -0.13 -2.62 5.54 30.60 0.17 -2.45 16 6 C -0.11 -1.78 5.92 30.60 0.18 -1.60 16 7 C -0.11 -2.17 5.92 30.59 0.18 -1.99 16 8 C -0.15 -3.81 4.51 30.59 0.14 -3.67 16 9 C 0.09 2.68 1.92 44.92 0.09 2.77 16 10 H 0.07 2.28 8.08 -2.39 -0.02 2.26 16 11 N -0.54 -20.44 4.51 -871.13 -3.93 -24.37 16 12 C 0.07 2.33 4.63 86.33 0.40 2.73 16 13 C -0.11 -4.41 6.09 30.65 0.19 -4.22 16 14 C -0.10 -5.00 5.03 30.67 0.15 -4.84 16 15 C 0.05 2.83 2.26 -11.49 -0.03 2.81 16 16 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 17 C -0.53 -30.65 8.56 25.60 0.22 -30.43 16 18 H 0.05 2.84 7.74 -2.91 -0.02 2.81 16 19 C 0.01 0.78 5.31 84.66 0.45 1.23 16 20 N -0.92 -54.67 11.36 21.45 0.24 -54.43 16 21 Si 0.96 44.75 29.54 68.60 2.03 46.77 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 23 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 24 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 25 C 0.09 3.82 4.25 86.32 0.37 4.19 16 26 H 0.05 0.95 7.87 -2.39 -0.02 0.93 16 27 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.04 0.84 8.08 -2.39 -0.02 0.82 16 29 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.08 1.28 7.87 -2.39 -0.02 1.26 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.05 1.60 6.65 -2.39 -0.02 1.59 16 36 H 0.07 1.70 6.52 -2.39 -0.02 1.69 16 37 H 0.03 1.06 6.62 -2.39 -0.02 1.04 16 38 H 0.08 2.36 6.03 -2.38 -0.01 2.35 16 39 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.06 3.17 6.16 -2.39 -0.01 3.16 16 42 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 44 H 0.05 2.12 8.08 -2.39 -0.02 2.11 16 45 H 0.02 0.92 6.73 -2.39 -0.02 0.90 16 Total: -1.00 -64.71 331.56 1.54 -63.18 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.93 Total: 13.21 kcal Atomic # 6 Polarization: -34.73 SS G_CDS: 3.79 Total: -30.95 kcal Atomic # 7 Polarization: -75.11 SS G_CDS: -3.69 Total: -78.80 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: -1.52 Total: -13.41 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -64.71 1.54 -63.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397598860.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.775 kcal (2) G-P(sol) polarization free energy of solvation -64.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds