Wall clock time and date at job start Mon Mar 30 2020 06:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47389 * 2 1 4 4 C 1.50696 * 109.47205 * 239.99260 * 2 1 3 5 5 O 1.21294 * 120.00317 * 245.43198 * 4 2 1 6 6 N 1.34783 * 119.99818 * 65.43240 * 4 2 1 7 7 C 1.37091 * 119.99693 * 5.75119 * 6 4 2 8 8 H 1.08001 * 119.99956 * 231.71535 * 7 6 4 9 9 C 1.38950 * 120.00143 * 51.72324 * 7 6 4 10 10 N 1.31408 * 119.99890 * 17.89382 * 9 7 6 11 11 Si 1.86801 * 119.99722 * 197.88834 * 9 7 6 12 12 H 1.48500 * 109.46987 * 90.00358 * 11 9 7 13 13 H 1.48501 * 109.47092 * 210.00003 * 11 9 7 14 14 H 1.48493 * 109.47642 * 330.00304 * 11 9 7 15 15 C 1.46499 * 119.99905 * 185.75091 * 6 4 2 16 16 C 1.54266 * 110.03184 * 237.90893 * 15 6 4 17 17 C 1.54965 * 104.15915 * 217.13466 * 16 15 6 18 18 C 1.54894 * 102.77740 * 37.88751 * 17 16 15 19 19 C 1.53872 * 110.03303 * 120.68947 * 15 6 4 20 20 C 1.53007 * 109.46564 * 119.99572 * 2 1 3 21 21 C 1.52991 * 109.47332 * 60.00120 * 20 2 1 22 22 C 1.53002 * 109.46564 * 179.97438 * 20 2 1 23 23 C 1.53001 * 109.47035 * 299.99653 * 20 2 1 24 24 H 1.09005 * 109.47482 * 295.62265 * 1 2 3 25 25 H 1.08999 * 109.47204 * 175.61381 * 1 2 3 26 26 H 1.09004 * 109.46634 * 55.61887 * 1 2 3 27 27 H 0.97000 * 119.99758 * 184.91818 * 10 9 7 28 28 H 1.09010 * 110.01692 * 359.30093 * 15 6 4 29 29 H 1.08995 * 110.48317 * 335.78366 * 16 15 6 30 30 H 1.09000 * 110.48651 * 98.42831 * 16 15 6 31 31 H 1.09006 * 110.72260 * 279.57636 * 17 16 15 32 32 H 1.08996 * 110.92187 * 156.29263 * 17 16 15 33 33 H 1.08997 * 110.48704 * 203.40497 * 18 17 16 34 34 H 1.08995 * 110.59522 * 80.81400 * 18 17 16 35 35 H 1.09000 * 110.03169 * 238.57220 * 19 15 6 36 36 H 1.09004 * 110.03292 * 359.97438 * 19 15 6 37 37 H 1.09002 * 109.47219 * 59.99316 * 21 20 2 38 38 H 1.09000 * 109.47607 * 180.02562 * 21 20 2 39 39 H 1.09005 * 109.46964 * 300.00222 * 21 20 2 40 40 H 1.09000 * 109.47389 * 60.00428 * 22 20 2 41 41 H 1.09002 * 109.46810 * 179.97438 * 22 20 2 42 42 H 1.08994 * 109.47409 * 299.99663 * 22 20 2 43 43 H 1.08996 * 109.46754 * 60.00360 * 23 20 2 44 44 H 1.09002 * 109.47122 * 180.02562 * 23 20 2 45 45 H 1.08998 * 109.47157 * 300.00132 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.6463 -1.7510 -1.1217 6 7 1.7994 -0.1899 -2.4515 7 6 1.2105 1.0423 -2.5703 8 1 0.3445 1.1682 -3.2033 9 6 1.7276 2.1294 -1.8763 10 7 2.9508 2.0822 -1.3983 11 14 0.6841 3.6579 -1.6230 12 1 -0.0815 3.5304 -0.3570 13 1 1.5643 4.8518 -1.5510 14 1 -0.2600 3.8068 -2.7595 15 6 2.1757 -0.9408 -3.6519 16 6 3.1508 -0.1097 -4.5111 17 6 2.7399 -0.4323 -5.9700 18 6 1.1960 -0.5181 -5.8801 19 6 0.9335 -1.2008 -4.5219 20 6 2.0399 -0.7212 1.2494 21 6 1.5299 -2.1636 1.2495 22 6 3.5699 -0.7218 1.2491 23 6 1.5299 0.0002 2.4985 24 1 -0.3634 0.4444 0.9266 25 1 -0.3633 -1.0246 -0.0786 26 1 -0.3633 0.5804 -0.8482 27 1 3.2870 2.8108 -0.8534 28 1 2.6390 -1.8865 -3.3704 29 1 3.0278 0.9539 -4.3066 30 1 4.1798 -0.4182 -4.3266 31 1 3.1619 -1.3859 -6.2876 32 1 3.0437 0.3671 -6.6458 33 1 0.7995 -1.1242 -6.6947 34 1 0.7549 0.4785 -5.8977 35 1 0.7944 -2.2726 -4.6634 36 1 0.0505 -0.7686 -4.0508 37 1 1.8932 -2.6775 0.3595 38 1 1.8927 -2.6773 2.1397 39 1 0.4399 -2.1636 1.2494 40 1 3.9337 0.3057 1.2488 41 1 3.9332 -1.2352 2.1393 42 1 3.9329 -1.2359 0.3592 43 1 0.4399 0.0002 2.4984 44 1 1.8935 -0.5133 3.3886 45 1 1.8933 1.0278 2.4984 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399134804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:06 Heat of formation + Delta-G solvation = -52.725937 kcal Electronic energy + Delta-G solvation = -23046.402731 eV Core-core repulsion = 20063.245777 eV Total energy + Delta-G solvation = -2983.156953 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.45666 -37.47777 -35.38355 -34.22957 -31.37545 -29.95894 -27.93503 -27.01846 -26.52737 -26.35147 -24.81592 -23.02809 -20.12071 -19.93323 -19.27921 -17.66540 -16.29016 -15.70248 -15.07617 -14.67958 -14.39860 -14.15930 -13.85191 -13.34676 -13.31470 -12.92010 -12.62656 -12.49701 -11.91819 -11.52549 -11.42809 -11.36022 -11.29808 -10.99213 -10.87115 -10.80974 -10.66515 -10.50347 -10.42946 -10.35063 -10.31283 -10.17340 -10.11136 -9.97592 -9.63752 -9.61506 -9.47943 -8.56190 -7.84350 -7.19595 -6.35780 -4.16176 3.12201 3.21718 3.22395 4.07718 4.24899 4.87558 4.94427 5.38224 5.40136 5.55328 5.59403 5.68964 5.84212 6.09570 6.13076 6.23371 6.25704 6.30596 6.33631 6.35714 6.37082 6.43562 6.50405 6.52637 6.53829 6.56020 6.57232 6.62180 6.74985 6.77485 6.85811 6.91666 6.96620 7.03032 7.12815 7.21868 7.26120 7.32398 7.43899 7.52018 7.55441 8.05740 8.74286 8.97914 9.71221 10.14474 10.66639 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.016725 B = 0.009539 C = 0.007243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.765502 B = 2934.565713 C = 3864.922733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.093 4.093 3 H 0.119 0.881 4 C 0.528 3.472 5 O -0.604 6.604 6 N -0.451 5.451 7 C -0.322 4.322 8 H 0.079 0.921 9 C 0.051 3.949 10 N -0.851 5.851 11 Si 0.894 3.106 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.268 1.268 15 C 0.133 3.867 16 C -0.120 4.120 17 C -0.123 4.123 18 C -0.116 4.116 19 C -0.127 4.127 20 C -0.047 4.047 21 C -0.152 4.152 22 C -0.139 4.139 23 C -0.140 4.140 24 H 0.044 0.956 25 H 0.041 0.959 26 H 0.074 0.926 27 H 0.269 0.731 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.032 0.968 39 H 0.039 0.961 40 H 0.044 0.956 41 H 0.031 0.969 42 H 0.080 0.920 43 H 0.052 0.948 44 H 0.044 0.956 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.294 -1.752 -0.534 3.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 H 0.136 0.864 4 C 0.320 3.680 5 O -0.491 6.491 6 N -0.171 5.171 7 C -0.451 4.451 8 H 0.097 0.903 9 C -0.155 4.155 10 N -0.487 5.487 11 Si 0.719 3.281 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.193 1.193 15 C 0.028 3.972 16 C -0.158 4.158 17 C -0.161 4.161 18 C -0.154 4.154 19 C -0.166 4.166 20 C -0.048 4.048 21 C -0.209 4.209 22 C -0.196 4.196 23 C -0.197 4.197 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.107 0.893 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.051 0.949 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.050 0.950 42 H 0.099 0.901 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.835 -2.113 -0.465 3.566 hybrid contribution -0.407 1.073 0.244 1.173 sum -3.242 -1.040 -0.221 3.412 Atomic orbital electron populations 1.21803 0.95348 1.00906 1.01650 1.21356 0.95592 1.03045 0.91414 0.86382 1.20230 0.79447 0.83381 0.84959 1.90328 1.45608 1.26542 1.86580 1.43399 1.55039 1.16251 1.02383 1.19052 1.10024 0.84229 1.31747 0.90349 1.25458 0.94332 0.97944 0.97766 1.70031 1.12836 1.33681 1.32139 0.86452 0.80303 0.81825 0.79477 1.19710 1.20982 1.19270 1.21534 0.93190 0.95555 0.86898 1.22578 0.97824 1.02803 0.92602 1.22455 0.95842 1.00108 0.97701 1.22250 0.96091 1.00401 0.96642 1.22414 0.99822 0.98855 0.95487 1.20255 0.95701 0.95056 0.93776 1.22202 0.99440 0.96581 1.02698 1.21920 0.94903 1.01028 1.01755 1.21937 1.00562 0.99934 0.97279 0.93736 0.94001 0.90751 0.92082 0.90552 0.89328 0.93193 0.92626 0.92526 0.93080 0.91742 0.93103 0.91129 0.88989 0.94933 0.94182 0.93698 0.94967 0.90115 0.92946 0.93705 0.93289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 8.23 37.16 0.31 -2.48 16 2 C -0.09 -2.05 1.20 -91.77 -0.11 -2.16 16 3 H 0.12 2.84 4.57 -51.93 -0.24 2.60 16 4 C 0.53 12.87 5.71 -10.98 -0.06 12.81 16 5 O -0.60 -15.58 10.75 5.55 0.06 -15.52 16 6 N -0.45 -10.69 2.37 -106.54 -0.25 -10.94 16 7 C -0.32 -7.61 5.12 -14.94 -0.08 -7.69 16 8 H 0.08 1.84 7.20 -52.49 -0.38 1.46 16 9 C 0.05 1.21 3.44 -17.47 -0.06 1.15 16 10 N -0.85 -21.50 11.40 55.50 0.63 -20.87 16 11 Si 0.89 18.72 29.59 -169.99 -5.03 13.69 16 12 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 13 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 14 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 15 C 0.13 2.86 3.29 -66.81 -0.22 2.64 16 16 C -0.12 -2.43 6.42 -25.03 -0.16 -2.59 16 17 C -0.12 -2.02 6.91 -24.69 -0.17 -2.19 16 18 C -0.12 -1.87 6.83 -25.07 -0.17 -2.04 16 19 C -0.13 -2.34 6.25 -25.61 -0.16 -2.50 16 20 C -0.05 -0.95 0.54 -154.51 -0.08 -1.03 16 21 C -0.15 -2.93 7.82 37.15 0.29 -2.64 16 22 C -0.14 -2.88 8.18 37.16 0.30 -2.58 16 23 C -0.14 -2.40 8.13 37.16 0.30 -2.10 16 24 H 0.04 0.80 6.20 -51.93 -0.32 0.47 16 25 H 0.04 0.80 6.67 -51.93 -0.35 0.46 16 26 H 0.07 1.54 6.24 -51.93 -0.32 1.22 16 27 H 0.27 6.54 8.32 -40.82 -0.34 6.20 16 28 H 0.08 1.76 6.96 -51.92 -0.36 1.40 16 29 H 0.09 2.04 7.03 -51.93 -0.37 1.67 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 1.37 6.93 -51.93 -0.36 1.01 16 37 H 0.09 2.01 5.32 -51.93 -0.28 1.74 16 38 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.04 0.72 6.53 -51.93 -0.34 0.38 16 40 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.08 1.90 5.71 -51.93 -0.30 1.61 16 43 H 0.05 0.85 6.33 -51.93 -0.33 0.52 16 44 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 327.07 15.07 4.93 4.93 Total: -1.00 -25.66 327.07 -7.46 -33.11 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -7.72 Total: 9.02 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -0.07 Total: -13.41 kcal Atomic # 7 Polarization: -32.19 SS G_CDS: 0.38 Total: -31.81 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: 0.06 Total: -15.52 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -25.66 -7.46 -33.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399134804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.611 kcal (2) G-P(sol) polarization free energy of solvation -25.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds