Wall clock time and date at job start Mon Mar 30 2020 06:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47389 * 2 1 4 4 C 1.50696 * 109.47205 * 239.99260 * 2 1 3 5 5 O 1.21294 * 120.00317 * 245.43198 * 4 2 1 6 6 N 1.34783 * 119.99818 * 65.43240 * 4 2 1 7 7 C 1.37091 * 119.99693 * 5.75119 * 6 4 2 8 8 H 1.08001 * 119.99956 * 231.71535 * 7 6 4 9 9 C 1.38950 * 120.00143 * 51.72324 * 7 6 4 10 10 N 1.31408 * 119.99890 * 17.89382 * 9 7 6 11 11 Si 1.86801 * 119.99722 * 197.88834 * 9 7 6 12 12 H 1.48500 * 109.46987 * 90.00358 * 11 9 7 13 13 H 1.48501 * 109.47092 * 210.00003 * 11 9 7 14 14 H 1.48493 * 109.47642 * 330.00304 * 11 9 7 15 15 C 1.46499 * 119.99905 * 185.75091 * 6 4 2 16 16 C 1.54266 * 110.03184 * 237.90893 * 15 6 4 17 17 C 1.54965 * 104.15915 * 217.13466 * 16 15 6 18 18 C 1.54894 * 102.77740 * 37.88751 * 17 16 15 19 19 C 1.53872 * 110.03303 * 120.68947 * 15 6 4 20 20 C 1.53007 * 109.46564 * 119.99572 * 2 1 3 21 21 C 1.52991 * 109.47332 * 60.00120 * 20 2 1 22 22 C 1.53002 * 109.46564 * 179.97438 * 20 2 1 23 23 C 1.53001 * 109.47035 * 299.99653 * 20 2 1 24 24 H 1.09005 * 109.47482 * 295.62265 * 1 2 3 25 25 H 1.08999 * 109.47204 * 175.61381 * 1 2 3 26 26 H 1.09004 * 109.46634 * 55.61887 * 1 2 3 27 27 H 0.97000 * 119.99758 * 184.91818 * 10 9 7 28 28 H 1.09010 * 110.01692 * 359.30093 * 15 6 4 29 29 H 1.08995 * 110.48317 * 335.78366 * 16 15 6 30 30 H 1.09000 * 110.48651 * 98.42831 * 16 15 6 31 31 H 1.09006 * 110.72260 * 279.57636 * 17 16 15 32 32 H 1.08996 * 110.92187 * 156.29263 * 17 16 15 33 33 H 1.08997 * 110.48704 * 203.40497 * 18 17 16 34 34 H 1.08995 * 110.59522 * 80.81400 * 18 17 16 35 35 H 1.09000 * 110.03169 * 238.57220 * 19 15 6 36 36 H 1.09004 * 110.03292 * 359.97438 * 19 15 6 37 37 H 1.09002 * 109.47219 * 59.99316 * 21 20 2 38 38 H 1.09000 * 109.47607 * 180.02562 * 21 20 2 39 39 H 1.09005 * 109.46964 * 300.00222 * 21 20 2 40 40 H 1.09000 * 109.47389 * 60.00428 * 22 20 2 41 41 H 1.09002 * 109.46810 * 179.97438 * 22 20 2 42 42 H 1.08994 * 109.47409 * 299.99663 * 22 20 2 43 43 H 1.08996 * 109.46754 * 60.00360 * 23 20 2 44 44 H 1.09002 * 109.47122 * 180.02562 * 23 20 2 45 45 H 1.08998 * 109.47157 * 300.00132 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.6463 -1.7510 -1.1217 6 7 1.7994 -0.1899 -2.4515 7 6 1.2105 1.0423 -2.5703 8 1 0.3445 1.1682 -3.2033 9 6 1.7276 2.1294 -1.8763 10 7 2.9508 2.0822 -1.3983 11 14 0.6841 3.6579 -1.6230 12 1 -0.0815 3.5304 -0.3570 13 1 1.5643 4.8518 -1.5510 14 1 -0.2600 3.8068 -2.7595 15 6 2.1757 -0.9408 -3.6519 16 6 3.1508 -0.1097 -4.5111 17 6 2.7399 -0.4323 -5.9700 18 6 1.1960 -0.5181 -5.8801 19 6 0.9335 -1.2008 -4.5219 20 6 2.0399 -0.7212 1.2494 21 6 1.5299 -2.1636 1.2495 22 6 3.5699 -0.7218 1.2491 23 6 1.5299 0.0002 2.4985 24 1 -0.3634 0.4444 0.9266 25 1 -0.3633 -1.0246 -0.0786 26 1 -0.3633 0.5804 -0.8482 27 1 3.2870 2.8108 -0.8534 28 1 2.6390 -1.8865 -3.3704 29 1 3.0278 0.9539 -4.3066 30 1 4.1798 -0.4182 -4.3266 31 1 3.1619 -1.3859 -6.2876 32 1 3.0437 0.3671 -6.6458 33 1 0.7995 -1.1242 -6.6947 34 1 0.7549 0.4785 -5.8977 35 1 0.7944 -2.2726 -4.6634 36 1 0.0505 -0.7686 -4.0508 37 1 1.8932 -2.6775 0.3595 38 1 1.8927 -2.6773 2.1397 39 1 0.4399 -2.1636 1.2494 40 1 3.9337 0.3057 1.2488 41 1 3.9332 -1.2352 2.1393 42 1 3.9329 -1.2359 0.3592 43 1 0.4399 0.0002 2.4984 44 1 1.8935 -0.5133 3.3886 45 1 1.8933 1.0278 2.4984 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399134804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:05 Heat of formation + Delta-G solvation = -64.168860 kcal Electronic energy + Delta-G solvation = -23046.898933 eV Core-core repulsion = 20063.245777 eV Total energy + Delta-G solvation = -2983.653156 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.21723 -39.06455 -37.05622 -36.03729 -33.19452 -31.59880 -29.45212 -28.62968 -27.98223 -27.96142 -26.64385 -24.70181 -21.79135 -21.39586 -21.01957 -19.29935 -18.11693 -17.38711 -16.89598 -16.26122 -16.04270 -15.73672 -15.55111 -14.99660 -14.87154 -14.54067 -14.20413 -14.09560 -13.60234 -13.22136 -13.10073 -12.94454 -12.80346 -12.60772 -12.48996 -12.43547 -12.25308 -12.12557 -11.98825 -11.88401 -11.85079 -11.81988 -11.70430 -11.40031 -11.29882 -11.24911 -11.10421 -10.36254 -9.68384 -9.04405 -8.20201 -6.05256 1.45171 1.50353 1.56604 2.30496 2.42363 3.12273 3.16032 3.88973 3.93316 4.02427 4.14067 4.16492 4.29805 4.54464 4.63067 4.71774 4.74464 4.77492 4.82194 4.85215 4.88761 4.91907 4.92950 4.94259 5.03787 5.09353 5.12530 5.16271 5.20722 5.22780 5.25614 5.34476 5.41546 5.44488 5.51378 5.55383 5.57658 5.61254 5.66767 5.86055 5.89364 6.22135 6.88166 7.13460 7.84957 8.29852 8.82776 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.016725 B = 0.009539 C = 0.007243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.765502 B = 2934.565713 C = 3864.922733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.092 4.092 3 H 0.100 0.900 4 C 0.512 3.488 5 O -0.629 6.629 6 N -0.459 5.459 7 C -0.323 4.323 8 H 0.080 0.920 9 C 0.023 3.977 10 N -0.882 5.882 11 Si 0.946 3.054 12 H -0.263 1.263 13 H -0.291 1.291 14 H -0.260 1.260 15 C 0.121 3.879 16 C -0.117 4.117 17 C -0.112 4.112 18 C -0.108 4.108 19 C -0.120 4.120 20 C -0.052 4.052 21 C -0.144 4.144 22 C -0.131 4.131 23 C -0.133 4.133 24 H 0.067 0.933 25 H 0.044 0.956 26 H 0.063 0.937 27 H 0.267 0.733 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.034 0.966 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.031 0.969 41 H 0.055 0.945 42 H 0.045 0.955 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.969 -1.558 -0.541 5.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.113 4.113 3 H 0.118 0.882 4 C 0.304 3.696 5 O -0.517 6.517 6 N -0.178 5.178 7 C -0.451 4.451 8 H 0.098 0.902 9 C -0.181 4.181 10 N -0.520 5.520 11 Si 0.770 3.230 12 H -0.188 1.188 13 H -0.217 1.217 14 H -0.184 1.184 15 C 0.017 3.983 16 C -0.155 4.155 17 C -0.150 4.150 18 C -0.145 4.145 19 C -0.159 4.159 20 C -0.053 4.053 21 C -0.201 4.201 22 C -0.188 4.188 23 C -0.191 4.191 24 H 0.086 0.914 25 H 0.064 0.936 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.053 0.947 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.051 0.949 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.527 -1.920 -0.493 4.942 hybrid contribution 0.191 0.961 0.221 1.004 sum -4.337 -0.959 -0.272 4.450 Atomic orbital electron populations 1.21751 0.93761 1.01159 1.02396 1.21334 0.96889 1.01778 0.91326 0.88246 1.20793 0.79446 0.83408 0.85956 1.90319 1.46659 1.27663 1.87050 1.43615 1.54730 1.16475 1.02954 1.19155 1.09927 0.84257 1.31738 0.90213 1.26019 0.94827 1.00016 0.97234 1.70135 1.14369 1.34464 1.32984 0.85635 0.78958 0.78479 0.79897 1.18753 1.21729 1.18416 1.21731 0.95082 0.94470 0.87060 1.22468 0.96876 1.00474 0.95683 1.22418 0.96125 1.01629 0.94787 1.22222 0.95738 1.00515 0.96072 1.22338 0.97424 1.00028 0.96091 1.20329 0.94892 0.95753 0.94292 1.22066 1.00091 0.95854 1.02106 1.21809 0.95985 0.99924 1.01106 1.21869 1.01374 0.99483 0.96327 0.91394 0.93650 0.91822 0.92317 0.92928 0.92323 0.94665 0.90815 0.90804 0.89751 0.92157 0.91663 0.92315 0.92082 0.92935 0.92960 0.94945 0.92583 0.93648 0.91563 0.91593 0.93682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.16 8.23 71.98 0.59 -4.57 16 2 C -0.09 -4.07 1.20 -11.54 -0.01 -4.08 16 3 H 0.10 4.82 4.57 -2.39 -0.01 4.81 16 4 C 0.51 25.66 5.71 87.65 0.50 26.16 16 5 O -0.63 -33.84 10.75 -3.07 -0.03 -33.87 16 6 N -0.46 -22.32 2.37 -609.37 -1.44 -23.77 16 7 C -0.32 -15.40 5.12 84.04 0.43 -14.97 16 8 H 0.08 3.74 7.20 -2.91 -0.02 3.71 16 9 C 0.02 1.07 3.44 84.93 0.29 1.37 16 10 N -0.88 -45.74 11.40 21.66 0.25 -45.50 16 11 Si 0.95 37.98 29.59 68.60 2.03 40.01 16 12 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 13 H -0.29 -11.97 7.11 99.48 0.71 -11.26 16 14 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 15 C 0.12 5.32 3.29 45.71 0.15 5.47 16 16 C -0.12 -4.83 6.42 31.70 0.20 -4.63 16 17 C -0.11 -3.46 6.91 31.91 0.22 -3.24 16 18 C -0.11 -3.22 6.83 31.67 0.22 -3.01 16 19 C -0.12 -4.33 6.25 31.32 0.20 -4.13 16 20 C -0.05 -2.04 0.54 -52.18 -0.03 -2.07 16 21 C -0.14 -5.39 7.82 71.98 0.56 -4.83 16 22 C -0.13 -5.49 8.18 71.98 0.59 -4.90 16 23 C -0.13 -4.25 8.13 71.98 0.59 -3.66 16 24 H 0.07 2.27 6.20 -2.38 -0.01 2.25 16 25 H 0.04 1.69 6.67 -2.39 -0.02 1.67 16 26 H 0.06 2.58 6.24 -2.38 -0.01 2.56 16 27 H 0.27 13.34 8.32 -92.71 -0.77 12.57 16 28 H 0.05 2.53 6.96 -2.38 -0.02 2.51 16 29 H 0.06 2.78 7.03 -2.39 -0.02 2.76 16 30 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 32 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 33 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.06 2.24 6.93 -2.39 -0.02 2.23 16 37 H 0.06 2.70 5.32 -2.39 -0.01 2.68 16 38 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.05 1.79 6.53 -2.38 -0.02 1.77 16 40 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.04 2.21 5.71 -2.39 -0.01 2.20 16 43 H 0.07 1.92 6.33 -2.39 -0.02 1.90 16 44 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -57.07 327.07 6.25 -50.82 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: 0.95 Total: 33.39 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: 4.50 Total: -21.08 kcal Atomic # 7 Polarization: -68.07 SS G_CDS: -1.20 Total: -69.26 kcal Atomic # 8 Polarization: -33.84 SS G_CDS: -0.03 Total: -33.87 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 2.03 Total: 40.01 kcal Total: -57.07 6.25 -50.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399134804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.351 kcal (2) G-P(sol) polarization free energy of solvation -57.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds