Wall clock time and date at job start Mon Mar 30 2020 06:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47276 * 2 1 4 4 C 1.50694 * 109.47485 * 120.00664 * 2 1 3 5 5 O 1.21297 * 120.00085 * 104.61584 * 4 2 1 6 6 N 1.34778 * 119.99920 * 284.62216 * 4 2 1 7 7 C 1.37100 * 119.99792 * 183.29743 * 6 4 2 8 8 H 1.08002 * 119.99652 * 134.47466 * 7 6 4 9 9 C 1.38947 * 120.00314 * 314.47165 * 7 6 4 10 10 N 1.31412 * 120.00088 * 161.21076 * 9 7 6 11 11 Si 1.86800 * 119.99743 * 341.20876 * 9 7 6 12 12 H 1.48501 * 109.47326 * 93.66016 * 11 9 7 13 13 H 1.48503 * 109.47115 * 213.65867 * 11 9 7 14 14 H 1.48504 * 109.47220 * 333.65589 * 11 9 7 15 15 C 1.46494 * 120.00086 * 3.29656 * 6 4 2 16 16 C 1.54960 * 110.92360 * 131.18447 * 15 6 4 17 17 C 1.54272 * 104.16047 * 156.29465 * 16 15 6 18 18 C 1.53873 * 106.64037 * 336.44906 * 17 16 15 19 19 C 1.54262 * 106.59773 * 359.97075 * 18 17 16 20 20 C 1.53005 * 109.46991 * 240.00759 * 2 1 3 21 21 C 1.52999 * 109.46944 * 299.99832 * 20 2 1 22 22 C 1.52994 * 109.47022 * 59.99520 * 20 2 1 23 23 C 1.53000 * 109.46991 * 180.02562 * 20 2 1 24 24 H 1.08993 * 109.47393 * 62.65329 * 1 2 3 25 25 H 1.09005 * 109.47035 * 182.65862 * 1 2 3 26 26 H 1.09002 * 109.46839 * 302.65451 * 1 2 3 27 27 H 0.97000 * 119.99682 * 180.02562 * 10 9 7 28 28 H 1.09006 * 110.67131 * 7.87983 * 15 6 4 29 29 H 1.09000 * 110.47967 * 37.64709 * 16 15 6 30 30 H 1.08996 * 110.53107 * 274.97359 * 16 15 6 31 31 H 1.08999 * 110.03663 * 217.13528 * 17 16 15 32 32 H 1.09006 * 110.03193 * 95.75668 * 17 16 15 33 33 H 1.09000 * 110.03220 * 119.25835 * 18 17 16 34 34 H 1.08999 * 110.03381 * 240.64114 * 18 17 16 35 35 H 1.09002 * 110.48579 * 142.28608 * 19 18 17 36 36 H 1.08995 * 110.49083 * 264.80493 * 19 18 17 37 37 H 1.09003 * 109.47647 * 59.99890 * 21 20 2 38 38 H 1.09000 * 109.47371 * 180.02562 * 21 20 2 39 39 H 1.09004 * 109.47188 * 300.00484 * 21 20 2 40 40 H 1.09005 * 109.47137 * 60.00685 * 22 20 2 41 41 H 1.09007 * 109.47153 * 180.02562 * 22 20 2 42 42 H 1.08998 * 109.47664 * 300.00213 * 22 20 2 43 43 H 1.08995 * 109.47081 * 59.99754 * 23 20 2 44 44 H 1.09000 * 109.46834 * 179.97438 * 23 20 2 45 45 H 1.08997 * 109.46757 * 299.99317 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.4845 -1.8325 1.1406 6 7 1.9793 -0.0993 2.4304 7 6 2.4979 -0.7182 3.5384 8 1 3.1214 -0.1639 4.2243 9 6 2.2212 -2.0585 3.7789 10 7 2.9818 -2.7496 4.5980 11 14 0.7682 -2.8777 2.9381 12 1 1.2257 -3.5336 1.6868 13 1 0.1816 -3.8968 3.8451 14 1 -0.2578 -1.8542 2.6140 15 6 1.3674 1.2263 2.5508 16 6 0.3562 1.2645 3.7244 17 6 0.2791 2.7568 4.1077 18 6 1.5910 3.4030 3.6291 19 6 2.4208 2.2809 2.9719 20 6 2.0400 -0.7211 -1.2494 21 6 1.5300 -2.1636 -1.2495 22 6 1.5299 0.0002 -2.4985 23 6 3.5700 -0.7217 -1.2491 24 1 -0.3634 0.4720 -0.9127 25 1 -0.3633 -1.0266 0.0477 26 1 -0.3633 0.5545 0.8653 27 1 2.7888 -3.6854 4.7656 28 1 0.8850 1.5138 1.6165 29 1 0.7233 0.6736 4.5635 30 1 -0.6196 0.9031 3.4000 31 1 0.1845 2.8603 5.1887 32 1 -0.5708 3.2262 3.6122 33 1 1.3778 4.1854 2.9007 34 1 2.1327 3.8208 4.4777 35 1 2.9510 2.6602 2.0983 36 1 3.1234 1.8560 3.6888 37 1 0.4400 -2.1637 -1.2494 38 1 1.8936 -2.6775 -2.1393 39 1 1.8933 -2.6775 -0.3595 40 1 1.8933 1.0279 -2.4984 41 1 1.8928 -0.5138 -3.3886 42 1 0.4399 0.0002 -2.4985 43 1 3.9329 -1.2358 -0.3592 44 1 3.9333 -1.2358 -2.1389 45 1 3.9336 0.3058 -1.2488 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399134807.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:09 Heat of formation + Delta-G solvation = -42.056980 kcal Electronic energy + Delta-G solvation = -23040.211859 eV Core-core repulsion = 20057.517546 eV Total energy + Delta-G solvation = -2982.694313 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.93146 -37.68929 -36.08916 -33.58766 -32.01480 -30.50356 -28.19576 -27.15172 -27.03316 -26.72507 -24.98284 -23.22544 -20.36729 -19.86139 -19.64477 -17.99244 -16.74543 -16.12300 -15.34814 -15.02132 -14.70393 -14.06961 -13.99180 -13.66064 -13.44953 -13.15031 -12.82503 -12.65531 -12.30899 -12.06009 -11.83390 -11.74366 -11.53658 -11.34745 -11.28552 -10.98794 -10.83879 -10.69949 -10.61094 -10.57119 -10.41588 -10.21691 -10.04617 -10.02935 -9.90004 -9.81114 -9.75393 -8.48290 -8.00670 -7.43246 -6.12264 -3.90156 3.36013 3.50272 3.67487 3.91041 4.44994 4.60740 5.05602 5.07477 5.11458 5.17116 5.24295 5.37330 5.46051 5.59819 5.66712 5.75240 5.80949 5.91982 5.94710 5.97101 6.03440 6.06305 6.09589 6.12779 6.15000 6.22656 6.23016 6.30294 6.32017 6.35380 6.39763 6.46565 6.55766 6.63056 6.72098 6.76763 6.83298 6.98045 7.04055 7.26059 7.93856 8.11776 8.88438 9.05878 9.52006 9.94708 10.93415 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.014805 B = 0.010771 C = 0.007622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.839759 B = 2599.036955 C = 3672.860583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.099 4.099 3 H 0.079 0.921 4 C 0.464 3.536 5 O -0.534 6.534 6 N -0.458 5.458 7 C -0.340 4.340 8 H 0.091 0.909 9 C 0.094 3.906 10 N -0.871 5.871 11 Si 0.903 3.097 12 H -0.253 1.253 13 H -0.312 1.312 14 H -0.279 1.279 15 C 0.121 3.879 16 C -0.129 4.129 17 C -0.121 4.121 18 C -0.120 4.120 19 C -0.131 4.131 20 C -0.043 4.043 21 C -0.166 4.166 22 C -0.141 4.141 23 C -0.144 4.144 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.270 0.730 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.079 0.921 37 H 0.040 0.960 38 H 0.038 0.962 39 H 0.108 0.892 40 H 0.049 0.951 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.079 0.921 44 H 0.045 0.955 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.485 9.782 -8.241 13.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.121 4.121 3 H 0.098 0.902 4 C 0.253 3.747 5 O -0.417 6.417 6 N -0.179 5.179 7 C -0.466 4.466 8 H 0.108 0.892 9 C -0.114 4.114 10 N -0.506 5.506 11 Si 0.734 3.266 12 H -0.179 1.179 13 H -0.242 1.242 14 H -0.204 1.204 15 C 0.017 3.983 16 C -0.167 4.167 17 C -0.159 4.159 18 C -0.158 4.158 19 C -0.170 4.170 20 C -0.044 4.044 21 C -0.223 4.223 22 C -0.199 4.199 23 C -0.202 4.202 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.126 0.874 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.098 0.902 44 H 0.064 0.936 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.189 9.057 -8.173 13.257 hybrid contribution -0.788 -0.284 -0.308 0.892 sum -5.977 8.773 -8.481 13.588 Atomic orbital electron populations 1.22000 0.94510 1.02581 1.01732 1.21291 0.96352 0.99882 0.94588 0.90243 1.20300 0.82380 0.87917 0.84056 1.90368 1.48263 1.18763 1.84272 1.43653 1.52111 1.15516 1.06608 1.18612 1.30491 0.94449 1.03057 0.89153 1.25285 0.96118 0.96325 0.93707 1.69754 1.35992 1.08767 1.36107 0.86520 0.81170 0.79031 0.79908 1.17893 1.24190 1.20399 1.22257 0.93025 0.85284 0.97774 1.22626 0.98451 0.95439 1.00210 1.22071 0.97083 0.96247 1.00515 1.22051 0.96314 0.97690 0.99745 1.22651 0.98504 0.95403 1.00437 1.20202 0.95817 0.95778 0.92583 1.22427 0.99691 0.95944 1.04202 1.21960 1.00772 0.99786 0.97337 1.21941 0.94520 1.00843 1.02847 0.92039 0.92213 0.92134 0.92061 0.90081 0.89087 0.92690 0.92198 0.92642 0.92564 0.92263 0.92573 0.90268 0.94080 0.94330 0.87430 0.93147 0.93039 0.92735 0.90209 0.93627 0.93853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 8.12 37.16 0.30 -2.11 16 2 C -0.10 -1.76 1.23 -91.77 -0.11 -1.87 16 3 H 0.08 1.29 7.25 -51.93 -0.38 0.92 16 4 C 0.46 10.53 4.54 -10.99 -0.05 10.48 16 5 O -0.53 -13.89 7.29 5.54 0.04 -13.85 16 6 N -0.46 -10.56 2.16 -105.58 -0.23 -10.79 16 7 C -0.34 -9.25 7.86 -14.93 -0.12 -9.37 16 8 H 0.09 2.61 7.16 -52.49 -0.38 2.23 16 9 C 0.09 2.72 4.86 -17.47 -0.08 2.63 16 10 N -0.87 -26.48 13.96 55.50 0.77 -25.71 16 11 Si 0.90 23.89 24.96 -169.99 -4.24 19.64 16 12 H -0.25 -6.92 6.08 56.52 0.34 -6.58 16 13 H -0.31 -8.29 7.11 56.52 0.40 -7.89 16 14 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 15 C 0.12 2.24 2.51 -65.90 -0.17 2.07 16 16 C -0.13 -2.28 6.32 -25.03 -0.16 -2.44 16 17 C -0.12 -1.69 6.80 -25.61 -0.17 -1.86 16 18 C -0.12 -1.63 6.80 -25.62 -0.17 -1.80 16 19 C -0.13 -2.19 6.41 -25.07 -0.16 -2.35 16 20 C -0.04 -0.72 0.54 -154.51 -0.08 -0.80 16 21 C -0.17 -3.01 7.81 37.16 0.29 -2.72 16 22 C -0.14 -1.85 8.13 37.15 0.30 -1.55 16 23 C -0.14 -2.46 8.18 37.16 0.30 -2.16 16 24 H 0.06 0.80 6.29 -51.93 -0.33 0.47 16 25 H 0.06 1.05 6.58 -51.93 -0.34 0.70 16 26 H 0.06 0.95 6.05 -51.93 -0.31 0.64 16 27 H 0.27 7.80 8.31 -40.82 -0.34 7.46 16 28 H 0.08 1.34 4.34 -51.93 -0.23 1.11 16 29 H 0.09 1.87 6.97 -51.93 -0.36 1.51 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 1.51 6.90 -51.93 -0.36 1.15 16 37 H 0.04 0.70 6.49 -51.93 -0.34 0.36 16 38 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.11 2.40 4.78 -51.93 -0.25 2.15 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.05 0.67 6.37 -51.93 -0.33 0.34 16 43 H 0.08 1.65 6.09 -51.93 -0.32 1.33 16 44 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 321.91 15.07 4.85 4.85 Total: -1.00 -30.52 321.91 -6.64 -37.17 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -7.76 Total: 2.54 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -0.08 Total: -13.85 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.55 Total: -36.50 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.04 Total: -13.85 kcal Atomic # 14 Polarization: 23.89 SS G_CDS: -4.24 Total: 19.64 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.52 -6.64 -37.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399134807.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.891 kcal (2) G-P(sol) polarization free energy of solvation -30.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds