Wall clock time and date at job start Mon Mar 30 2020 06:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47276 * 2 1 4 4 C 1.50694 * 109.47485 * 120.00664 * 2 1 3 5 5 O 1.21297 * 120.00085 * 104.61584 * 4 2 1 6 6 N 1.34778 * 119.99920 * 284.62216 * 4 2 1 7 7 C 1.37100 * 119.99792 * 183.29743 * 6 4 2 8 8 H 1.08002 * 119.99652 * 134.47466 * 7 6 4 9 9 C 1.38947 * 120.00314 * 314.47165 * 7 6 4 10 10 N 1.31412 * 120.00088 * 161.21076 * 9 7 6 11 11 Si 1.86800 * 119.99743 * 341.20876 * 9 7 6 12 12 H 1.48501 * 109.47326 * 93.66016 * 11 9 7 13 13 H 1.48503 * 109.47115 * 213.65867 * 11 9 7 14 14 H 1.48504 * 109.47220 * 333.65589 * 11 9 7 15 15 C 1.46494 * 120.00086 * 3.29656 * 6 4 2 16 16 C 1.54960 * 110.92360 * 131.18447 * 15 6 4 17 17 C 1.54272 * 104.16047 * 156.29465 * 16 15 6 18 18 C 1.53873 * 106.64037 * 336.44906 * 17 16 15 19 19 C 1.54262 * 106.59773 * 359.97075 * 18 17 16 20 20 C 1.53005 * 109.46991 * 240.00759 * 2 1 3 21 21 C 1.52999 * 109.46944 * 299.99832 * 20 2 1 22 22 C 1.52994 * 109.47022 * 59.99520 * 20 2 1 23 23 C 1.53000 * 109.46991 * 180.02562 * 20 2 1 24 24 H 1.08993 * 109.47393 * 62.65329 * 1 2 3 25 25 H 1.09005 * 109.47035 * 182.65862 * 1 2 3 26 26 H 1.09002 * 109.46839 * 302.65451 * 1 2 3 27 27 H 0.97000 * 119.99682 * 180.02562 * 10 9 7 28 28 H 1.09006 * 110.67131 * 7.87983 * 15 6 4 29 29 H 1.09000 * 110.47967 * 37.64709 * 16 15 6 30 30 H 1.08996 * 110.53107 * 274.97359 * 16 15 6 31 31 H 1.08999 * 110.03663 * 217.13528 * 17 16 15 32 32 H 1.09006 * 110.03193 * 95.75668 * 17 16 15 33 33 H 1.09000 * 110.03220 * 119.25835 * 18 17 16 34 34 H 1.08999 * 110.03381 * 240.64114 * 18 17 16 35 35 H 1.09002 * 110.48579 * 142.28608 * 19 18 17 36 36 H 1.08995 * 110.49083 * 264.80493 * 19 18 17 37 37 H 1.09003 * 109.47647 * 59.99890 * 21 20 2 38 38 H 1.09000 * 109.47371 * 180.02562 * 21 20 2 39 39 H 1.09004 * 109.47188 * 300.00484 * 21 20 2 40 40 H 1.09005 * 109.47137 * 60.00685 * 22 20 2 41 41 H 1.09007 * 109.47153 * 180.02562 * 22 20 2 42 42 H 1.08998 * 109.47664 * 300.00213 * 22 20 2 43 43 H 1.08995 * 109.47081 * 59.99754 * 23 20 2 44 44 H 1.09000 * 109.46834 * 179.97438 * 23 20 2 45 45 H 1.08997 * 109.46757 * 299.99317 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.4845 -1.8325 1.1406 6 7 1.9793 -0.0993 2.4304 7 6 2.4979 -0.7182 3.5384 8 1 3.1214 -0.1639 4.2243 9 6 2.2212 -2.0585 3.7789 10 7 2.9818 -2.7496 4.5980 11 14 0.7682 -2.8777 2.9381 12 1 1.2257 -3.5336 1.6868 13 1 0.1816 -3.8968 3.8451 14 1 -0.2578 -1.8542 2.6140 15 6 1.3674 1.2263 2.5508 16 6 0.3562 1.2645 3.7244 17 6 0.2791 2.7568 4.1077 18 6 1.5910 3.4030 3.6291 19 6 2.4208 2.2809 2.9719 20 6 2.0400 -0.7211 -1.2494 21 6 1.5300 -2.1636 -1.2495 22 6 1.5299 0.0002 -2.4985 23 6 3.5700 -0.7217 -1.2491 24 1 -0.3634 0.4720 -0.9127 25 1 -0.3633 -1.0266 0.0477 26 1 -0.3633 0.5545 0.8653 27 1 2.7888 -3.6854 4.7656 28 1 0.8850 1.5138 1.6165 29 1 0.7233 0.6736 4.5635 30 1 -0.6196 0.9031 3.4000 31 1 0.1845 2.8603 5.1887 32 1 -0.5708 3.2262 3.6122 33 1 1.3778 4.1854 2.9007 34 1 2.1327 3.8208 4.4777 35 1 2.9510 2.6602 2.0983 36 1 3.1234 1.8560 3.6888 37 1 0.4400 -2.1637 -1.2494 38 1 1.8936 -2.6775 -2.1393 39 1 1.8933 -2.6775 -0.3595 40 1 1.8933 1.0279 -2.4984 41 1 1.8928 -0.5138 -3.3886 42 1 0.4399 0.0002 -2.4985 43 1 3.9329 -1.2358 -0.3592 44 1 3.9333 -1.2358 -2.1389 45 1 3.9336 0.3058 -1.2488 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399134807.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:09 Heat of formation + Delta-G solvation = -60.095006 kcal Electronic energy + Delta-G solvation = -23040.994046 eV Core-core repulsion = 20057.517546 eV Total energy + Delta-G solvation = -2983.476500 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.56495 -39.07988 -37.62646 -35.37102 -34.01476 -31.96349 -29.49282 -28.58184 -28.36695 -27.99151 -26.76015 -24.74183 -21.97266 -21.40487 -20.97380 -19.52910 -18.48413 -17.74032 -17.15620 -16.48009 -16.06562 -15.77138 -15.47611 -15.14208 -14.96918 -14.85170 -14.33539 -14.14062 -13.95947 -13.44771 -13.25953 -13.19508 -12.96526 -12.70698 -12.65563 -12.55620 -12.38528 -12.22417 -11.96578 -11.93714 -11.87085 -11.80592 -11.72250 -11.34780 -11.32950 -11.26943 -11.12754 -10.69299 -9.78911 -9.35024 -8.35504 -6.10349 1.22981 1.34372 1.49347 2.07953 2.45667 2.77441 3.10924 3.72848 3.80581 3.88860 3.92793 3.98633 4.18789 4.29350 4.39473 4.52923 4.54058 4.62633 4.67373 4.70528 4.80527 4.84894 4.85872 4.89389 4.92732 4.95321 5.02966 5.04932 5.10168 5.16583 5.19558 5.27738 5.29831 5.33297 5.42163 5.44107 5.55409 5.62621 5.63771 5.75118 5.85673 5.98547 6.89288 7.06247 7.47569 8.05008 8.73726 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.014805 B = 0.010771 C = 0.007622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.839759 B = 2599.036955 C = 3672.860583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.093 4.093 3 H 0.104 0.896 4 C 0.456 3.544 5 O -0.571 6.571 6 N -0.474 5.474 7 C -0.319 4.319 8 H 0.059 0.941 9 C 0.044 3.956 10 N -0.920 5.920 11 Si 0.954 3.046 12 H -0.272 1.272 13 H -0.317 1.317 14 H -0.259 1.259 15 C 0.114 3.886 16 C -0.133 4.133 17 C -0.113 4.113 18 C -0.112 4.112 19 C -0.131 4.131 20 C -0.045 4.045 21 C -0.164 4.164 22 C -0.133 4.133 23 C -0.142 4.142 24 H 0.103 0.897 25 H 0.039 0.961 26 H 0.064 0.936 27 H 0.267 0.733 28 H 0.113 0.887 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.039 0.961 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.032 0.968 44 H 0.059 0.941 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.712 13.182 -11.213 18.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.115 4.115 3 H 0.122 0.878 4 C 0.247 3.753 5 O -0.455 6.455 6 N -0.196 5.196 7 C -0.447 4.447 8 H 0.077 0.923 9 C -0.159 4.159 10 N -0.559 5.559 11 Si 0.784 3.216 12 H -0.198 1.198 13 H -0.248 1.248 14 H -0.183 1.183 15 C 0.011 3.989 16 C -0.171 4.171 17 C -0.151 4.151 18 C -0.149 4.149 19 C -0.170 4.170 20 C -0.045 4.045 21 C -0.221 4.221 22 C -0.190 4.190 23 C -0.199 4.199 24 H 0.122 0.878 25 H 0.058 0.942 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.131 0.869 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.051 0.949 44 H 0.078 0.922 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.439 12.500 -11.150 18.328 hybrid contribution 0.010 -1.304 0.571 1.424 sum -7.429 11.196 -10.579 17.101 Atomic orbital electron populations 1.22035 0.92545 1.01966 1.04113 1.21354 0.97845 1.00326 0.91945 0.87801 1.21389 0.80956 0.87550 0.85368 1.90387 1.49333 1.20771 1.85041 1.43882 1.52837 1.17182 1.05691 1.18415 1.29010 0.93963 1.03293 0.92285 1.25889 0.98070 0.97298 0.94608 1.69851 1.38109 1.09005 1.38935 0.85695 0.79531 0.78423 0.77964 1.19846 1.24754 1.18337 1.22594 0.93741 0.82964 0.99593 1.22615 0.98157 0.97915 0.98454 1.22053 0.98511 0.93274 1.01247 1.22038 0.95326 0.97040 1.00543 1.22623 0.97982 0.95993 1.00385 1.20275 0.95180 0.95056 0.94011 1.22329 1.00216 0.97048 1.02527 1.21883 1.01647 1.00305 0.95152 1.21891 0.95374 1.01380 1.01256 0.87847 0.94182 0.91749 0.92361 0.86923 0.93253 0.92136 0.91830 0.89519 0.89268 0.91747 0.90978 0.94166 0.93144 0.92941 0.92072 0.91243 0.92004 0.91256 0.94869 0.92159 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.12 8.12 71.98 0.58 -3.54 16 2 C -0.09 -3.02 1.23 -11.54 -0.01 -3.03 16 3 H 0.10 2.88 7.25 -2.39 -0.02 2.86 16 4 C 0.46 20.59 4.54 87.66 0.40 20.99 16 5 O -0.57 -30.65 7.29 -3.08 -0.02 -30.68 16 6 N -0.47 -22.02 2.16 -606.33 -1.31 -23.33 16 7 C -0.32 -18.21 7.86 84.04 0.66 -17.55 16 8 H 0.06 3.67 7.16 -2.91 -0.02 3.65 16 9 C 0.04 2.67 4.86 84.93 0.41 3.09 16 10 N -0.92 -59.41 13.96 21.66 0.30 -59.11 16 11 Si 0.95 51.52 24.96 68.60 1.71 53.23 16 12 H -0.27 -15.40 6.08 99.48 0.60 -14.80 16 13 H -0.32 -17.11 7.11 99.48 0.71 -16.41 16 14 H -0.26 -12.87 7.11 99.48 0.71 -12.16 16 15 C 0.11 4.01 2.51 46.31 0.12 4.12 16 16 C -0.13 -4.52 6.32 31.70 0.20 -4.32 16 17 C -0.11 -2.77 6.80 31.32 0.21 -2.55 16 18 C -0.11 -2.63 6.80 31.32 0.21 -2.41 16 19 C -0.13 -4.15 6.41 31.67 0.20 -3.95 16 20 C -0.04 -1.35 0.54 -52.18 -0.03 -1.38 16 21 C -0.16 -5.73 7.81 71.98 0.56 -5.17 16 22 C -0.13 -2.76 8.13 71.98 0.58 -2.17 16 23 C -0.14 -4.61 8.18 71.98 0.59 -4.02 16 24 H 0.10 2.02 6.29 -2.39 -0.02 2.00 16 25 H 0.04 1.27 6.58 -2.38 -0.02 1.25 16 26 H 0.06 1.72 6.05 -2.39 -0.01 1.71 16 27 H 0.27 16.48 8.31 -92.71 -0.77 15.71 16 28 H 0.11 3.24 4.34 -2.38 -0.01 3.23 16 29 H 0.05 2.08 6.97 -2.39 -0.02 2.06 16 30 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.04 1.57 6.90 -2.39 -0.02 1.55 16 37 H 0.05 1.62 6.49 -2.39 -0.02 1.60 16 38 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.06 2.78 4.78 -2.39 -0.01 2.77 16 40 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 41 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 42 H 0.07 1.26 6.37 -2.39 -0.02 1.24 16 43 H 0.03 1.38 6.09 -2.39 -0.01 1.36 16 44 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -72.95 321.91 6.23 -66.72 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 0.85 Total: 15.07 kcal Atomic # 6 Polarization: -26.60 SS G_CDS: 4.70 Total: -21.91 kcal Atomic # 7 Polarization: -81.43 SS G_CDS: -1.01 Total: -82.44 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.02 Total: -30.68 kcal Atomic # 14 Polarization: 51.52 SS G_CDS: 1.71 Total: 53.23 kcal Total: -72.95 6.23 -66.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399134807.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.625 kcal (2) G-P(sol) polarization free energy of solvation -72.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds