Wall clock time and date at job start Mon Mar 30 2020 08:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00012 * 2 1 4 4 H 1.09003 * 110.54297 * 332.61472 * 3 2 1 5 5 C 1.54968 * 110.53035 * 95.24510 * 3 2 1 6 6 C 1.54883 * 102.77939 * 156.56536 * 5 3 2 7 7 C 1.54266 * 104.19743 * 322.08605 * 6 5 3 8 8 C 1.53878 * 106.59720 * 23.60870 * 7 6 5 9 9 H 1.09000 * 110.02910 * 240.67190 * 8 7 6 10 10 N 1.46898 * 110.03007 * 119.28789 * 8 7 6 11 11 C 1.46839 * 111.00046 * 62.09317 * 10 8 7 12 12 C 1.53037 * 109.52335 * 185.83589 * 11 10 8 13 13 C 1.53117 * 109.27955 * 300.82269 * 12 11 10 14 14 C 1.53006 * 109.52168 * 177.55775 * 13 12 11 15 15 C 1.50698 * 109.46914 * 174.99654 * 14 13 12 16 16 H 1.07999 * 120.00165 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00194 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99839 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00211 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47367 * 0.02562 * 19 17 15 21 21 H 1.48512 * 109.47200 * 119.99895 * 19 17 15 22 22 H 1.48503 * 109.47406 * 239.99750 * 19 17 15 23 23 C 1.53112 * 109.16138 * 57.65257 * 13 12 11 24 24 C 1.46852 * 110.99517 * 186.30119 * 10 8 7 25 25 H 1.08996 * 109.47531 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47294 * 299.99985 * 1 2 3 27 27 H 1.09005 * 109.47021 * 59.99543 * 1 2 3 28 28 H 1.09006 * 110.72028 * 38.25088 * 5 3 2 29 29 H 1.09004 * 110.92271 * 274.97541 * 5 3 2 30 30 H 1.08999 * 110.48995 * 203.40293 * 6 5 3 31 31 H 1.09003 * 110.59600 * 80.82034 * 6 5 3 32 32 H 1.08998 * 110.02810 * 264.32334 * 7 6 5 33 33 H 1.08997 * 110.03235 * 142.89633 * 7 6 5 34 34 H 1.08997 * 109.46735 * 65.82375 * 11 10 8 35 35 H 1.08997 * 109.45811 * 305.84506 * 11 10 8 36 36 H 1.08996 * 109.50678 * 180.87537 * 12 11 10 37 37 H 1.09006 * 109.50364 * 60.76532 * 12 11 10 38 38 H 1.08999 * 109.52048 * 297.68112 * 13 12 11 39 39 H 1.08995 * 109.46794 * 294.99849 * 14 13 12 40 40 H 1.09000 * 109.47314 * 54.99983 * 14 13 12 41 41 H 0.97003 * 120.00488 * 179.97438 * 18 17 15 42 42 H 1.08996 * 109.50678 * 62.29015 * 23 13 12 43 43 H 1.09005 * 109.50195 * 182.41136 * 23 13 12 44 44 H 1.08998 * 109.46026 * 294.17544 * 24 10 8 45 45 H 1.08994 * 109.46371 * 54.14476 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3378 2.0235 -0.4695 5 6 2.3525 1.7479 1.4452 6 6 3.4619 2.8062 1.2258 7 6 4.2960 2.2431 0.0565 8 6 3.3731 1.2896 -0.7226 9 1 3.7872 0.2814 -0.7165 10 7 3.2152 1.7602 -2.1051 11 6 4.5041 1.7692 -2.8084 12 6 4.3275 2.3992 -4.1919 13 6 3.2968 1.5928 -4.9868 14 6 3.0708 2.2531 -6.3484 15 6 2.1509 1.3937 -7.1768 16 1 1.7656 0.4694 -6.7725 17 6 1.8003 1.7880 -8.4506 18 7 2.2682 2.9144 -8.9425 19 14 0.6594 0.7232 -9.4772 20 1 0.2740 -0.4818 -8.6998 21 1 -0.5591 1.4970 -9.8264 22 1 1.3558 0.3083 -10.7215 23 6 1.9780 1.5583 -4.2097 24 6 2.2227 0.9526 -2.8257 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 2.7304 0.9070 2.0268 29 1 1.4846 2.1932 1.9318 30 1 4.0770 2.9052 2.1202 31 1 3.0263 3.7680 0.9551 32 1 5.1575 1.6974 0.4414 33 1 4.6267 3.0550 -0.5912 34 1 4.8650 0.7466 -2.9186 35 1 5.2267 2.3495 -2.2347 36 1 5.2812 2.3916 -4.7197 37 1 3.9800 3.4265 -4.0823 38 1 3.6624 0.5762 -5.1311 39 1 2.6201 3.2352 -6.2056 40 1 4.0260 2.3628 -6.8620 41 1 2.0219 3.1917 -9.8388 42 1 1.5933 2.5723 -4.1003 43 1 1.2530 0.9497 -4.7502 44 1 2.5942 -0.0662 -2.9357 45 1 1.2884 0.9397 -2.2646 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399707410.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:27:59 Heat of formation + Delta-G solvation = -68.111070 kcal Electronic energy + Delta-G solvation = -21545.600609 eV Core-core repulsion = 18561.776507 eV Total energy + Delta-G solvation = -2983.824103 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.86073 -37.78522 -36.05086 -33.81531 -32.02578 -30.45904 -28.57659 -28.30362 -26.66851 -25.69182 -23.62561 -22.65354 -20.95900 -20.54614 -19.66670 -18.88710 -17.12122 -16.38711 -16.19563 -15.19970 -15.07451 -14.56290 -14.44611 -14.16441 -13.63365 -13.48232 -13.26018 -12.95871 -12.75347 -12.56250 -12.02040 -11.82549 -11.56721 -11.45924 -11.29369 -11.15402 -11.05830 -10.79585 -10.73147 -10.65455 -10.57508 -10.51642 -10.18080 -9.86190 -9.57999 -9.47348 -8.98723 -8.81645 -8.29828 -8.02206 -5.94541 -3.95660 3.33316 3.40971 3.44898 3.60013 4.17752 4.42773 4.50063 4.59342 4.90401 5.13561 5.22109 5.27487 5.32045 5.37119 5.38766 5.40964 5.49911 5.54154 5.58846 5.60454 5.72231 5.79969 5.83364 5.87511 5.91635 5.96634 6.04596 6.08277 6.17345 6.21169 6.33896 6.51512 6.63625 6.73695 7.02801 7.12123 7.17605 7.25156 7.43742 7.47673 7.74710 7.91537 8.06776 8.50347 9.11263 9.67722 11.16882 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.027030 B = 0.004381 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.651780 B = 6389.650313 C = 7157.637714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.087 3.913 4 H 0.080 0.920 5 C -0.143 4.143 6 C -0.118 4.118 7 C -0.117 4.117 8 C 0.081 3.919 9 H 0.050 0.950 10 N -0.530 5.530 11 C 0.058 3.942 12 C -0.111 4.111 13 C -0.081 4.081 14 C 0.028 3.972 15 C -0.512 4.512 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.887 3.113 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.099 4.099 24 C 0.058 3.942 25 H 0.083 0.917 26 H 0.038 0.962 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.027 0.973 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.050 0.950 39 H 0.016 0.984 40 H 0.014 0.986 41 H 0.258 0.742 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.028 0.972 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.822 -1.946 20.721 20.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C 0.029 3.971 4 H 0.098 0.902 5 C -0.181 4.181 6 C -0.156 4.156 7 C -0.155 4.155 8 C -0.027 4.027 9 H 0.068 0.932 10 N -0.255 5.255 11 C -0.070 4.070 12 C -0.149 4.149 13 C -0.100 4.100 14 C -0.009 4.009 15 C -0.551 4.551 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.716 3.284 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.137 4.137 24 C -0.070 4.070 25 H 0.102 0.898 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.045 0.955 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.035 0.965 40 H 0.032 0.968 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.046 0.954 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.757 -1.534 20.569 20.640 hybrid contribution -0.577 -1.198 -0.738 1.521 sum 0.180 -2.732 19.832 20.020 Atomic orbital electron populations 1.22777 0.81222 1.02592 0.99997 1.87908 1.19562 1.27846 1.94888 1.23091 0.94719 0.84605 0.94678 0.90217 1.22919 0.98978 0.99163 0.97014 1.22214 0.96883 0.98427 0.98057 1.22180 0.97345 0.99235 0.96735 1.22253 0.94161 0.97209 0.89122 0.93238 1.62144 1.09372 1.53393 1.00628 1.22134 0.90190 0.98964 0.95713 1.21685 0.99678 1.00242 0.93279 1.21230 0.93345 0.98532 0.96890 1.19120 0.96620 0.95748 0.89423 1.21304 1.28128 1.06678 0.98972 0.92684 1.25013 0.96418 0.95122 0.97941 1.69977 1.45090 1.21929 1.16635 0.86610 0.80806 0.80650 0.80376 1.19803 1.21108 1.21122 1.21553 0.98746 1.01122 0.92277 1.22190 0.94725 0.94351 0.95689 0.89825 0.94304 0.93689 0.90764 0.91573 0.91590 0.91202 0.91774 0.90080 0.95481 0.91389 0.92197 0.91658 0.93103 0.96542 0.96800 0.93192 0.92038 0.91050 0.95404 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.63 101.05 1.07 1.38 16 2 O -0.38 -4.91 9.80 -35.23 -0.35 -5.26 16 3 C 0.09 1.05 1.89 -25.03 -0.05 1.00 16 4 H 0.08 1.01 7.22 -51.93 -0.37 0.64 16 5 C -0.14 -1.39 6.62 -24.70 -0.16 -1.55 16 6 C -0.12 -1.08 6.83 -25.08 -0.17 -1.25 16 7 C -0.12 -1.25 5.87 -25.61 -0.15 -1.40 16 8 C 0.08 1.05 2.43 -66.60 -0.16 0.89 16 9 H 0.05 0.71 8.07 -51.93 -0.42 0.29 16 10 N -0.53 -7.98 4.42 -225.36 -1.00 -8.98 16 11 C 0.06 0.87 5.22 -3.84 -0.02 0.85 16 12 C -0.11 -1.97 5.38 -26.65 -0.14 -2.11 16 13 C -0.08 -1.70 2.20 -90.50 -0.20 -1.90 16 14 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 15 C -0.51 -14.47 8.45 -34.44 -0.29 -14.76 16 16 H 0.05 1.52 7.08 -52.49 -0.37 1.15 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 19 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 C -0.10 -1.92 5.15 -26.65 -0.14 -2.06 16 24 C 0.06 0.95 5.10 -3.83 -0.02 0.93 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.04 0.33 8.14 -51.92 -0.42 -0.09 16 27 H 0.04 0.46 7.43 -51.93 -0.39 0.07 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.91 6.56 -51.93 -0.34 0.57 16 34 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.90 6.31 -51.93 -0.33 0.57 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.07 1.47 7.05 -51.93 -0.37 1.11 16 44 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.99 5.22 -51.93 -0.27 0.72 16 LS Contribution 339.42 15.07 5.11 5.11 Total: -1.00 -30.16 339.42 -9.50 -39.66 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -8.33 Total: -3.04 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -0.65 Total: -17.86 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: -0.26 Total: -35.43 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.35 Total: -5.26 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.16 -9.50 -39.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399707410.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.453 kcal (2) G-P(sol) polarization free energy of solvation -30.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds