Wall clock time and date at job start Mon Mar 30 2020 08:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 113.99939 * 2 1 4 4 C 1.53009 * 109.47095 * 174.99936 * 3 2 1 5 5 N 1.46903 * 109.46548 * 67.15466 * 4 3 2 6 6 C 1.46899 * 111.00104 * 53.99889 * 5 4 3 7 7 C 1.50698 * 109.47375 * 66.04155 * 6 5 4 8 8 H 1.08003 * 119.99805 * 359.72338 * 7 6 5 9 9 C 1.37872 * 120.00309 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00478 * 180.02562 * 9 7 6 11 11 Si 1.86806 * 119.99740 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.46574 * 90.00338 * 11 9 7 13 13 H 1.48500 * 109.47204 * 210.00164 * 11 9 7 14 14 H 1.48500 * 109.47083 * 330.00637 * 11 9 7 15 15 C 1.46898 * 111.00201 * 290.03889 * 5 4 3 16 16 C 1.52997 * 109.47133 * 299.21539 * 15 5 4 17 17 H 1.09004 * 109.61690 * 57.40375 * 16 15 5 18 18 C 1.53297 * 109.62190 * 296.85702 * 16 15 5 19 19 C 1.55453 * 106.46660 * 163.79395 * 18 16 15 20 20 C 1.52715 * 109.01569 * 58.14359 * 19 18 16 21 21 H 1.09001 * 115.38561 * 125.14545 * 20 19 18 22 22 C 1.51370 * 114.63179 * 266.17862 * 20 19 18 23 23 C 1.52061 * 120.52530 * 334.88138 * 20 19 18 24 24 H 1.09004 * 115.93373 * 151.11029 * 23 20 19 25 25 C 1.52071 * 120.02388 * 6.39010 * 23 20 19 26 26 H 1.08998 * 109.47392 * 304.96760 * 1 2 3 27 27 H 1.09003 * 109.46755 * 64.96878 * 1 2 3 28 28 H 1.09006 * 109.46849 * 184.96882 * 1 2 3 29 29 H 1.08996 * 109.47186 * 55.00115 * 3 2 1 30 30 H 1.08996 * 109.46992 * 294.99953 * 3 2 1 31 31 H 1.08996 * 109.46695 * 307.15454 * 4 3 2 32 32 H 1.08993 * 109.47093 * 187.15456 * 4 3 2 33 33 H 1.08998 * 109.46787 * 306.04012 * 6 5 4 34 34 H 1.08997 * 109.47000 * 186.04414 * 6 5 4 35 35 H 0.96994 * 120.00299 * 179.97438 * 10 9 7 36 36 H 1.09001 * 109.46808 * 59.21584 * 15 5 4 37 37 H 1.08996 * 109.47390 * 179.21741 * 15 5 4 38 38 H 1.08999 * 109.61667 * 285.56066 * 18 16 15 39 39 H 1.09005 * 109.61493 * 46.09776 * 18 16 15 40 40 H 1.09003 * 112.88261 * 296.40608 * 19 18 16 41 41 H 1.08991 * 106.79323 * 176.19122 * 19 18 16 42 42 H 1.08999 * 117.05513 * 4.66451 * 22 20 19 43 43 H 1.08998 * 117.72050 * 219.90518 * 22 20 19 44 44 H 1.09001 * 109.27203 * 219.25331 * 25 23 20 45 45 H 1.08996 * 109.23867 * 99.76484 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5305 1.1868 0.1257 5 7 4.0755 0.5679 -1.0900 6 6 3.6432 1.2957 -2.2905 7 6 4.2501 2.6751 -2.2875 8 1 4.8891 2.9821 -1.4727 9 6 3.9846 3.5474 -3.3217 10 7 4.5146 4.7510 -3.3193 11 14 2.8731 3.0190 -4.7271 12 1 1.4662 3.3664 -4.4028 13 1 3.2817 3.7190 -5.9713 14 1 2.9878 1.5516 -4.9241 15 6 3.7023 -0.8506 -1.1713 16 6 4.2704 -1.5975 0.0371 17 1 3.9035 -1.1399 0.9559 18 6 5.8019 -1.5394 0.0047 19 6 6.2880 -1.9320 1.4282 20 6 5.7576 -3.3230 1.7690 21 1 6.5130 -4.0523 2.0615 22 6 4.4506 -3.3302 2.5325 23 6 4.4979 -3.8538 1.1031 24 1 4.4384 -4.9364 0.9901 25 6 3.8370 -3.0626 -0.0149 26 1 -0.3634 0.5889 0.8421 27 1 -0.3633 0.4348 -0.9312 28 1 -0.3633 -1.0239 0.0890 29 1 1.6196 1.8771 0.8418 30 1 1.7613 1.8139 -0.9314 31 1 3.7765 0.5693 0.9896 32 1 3.9630 2.1791 0.2535 33 1 2.5563 1.3769 -2.2943 34 1 3.9704 0.7567 -3.1796 35 1 4.3281 5.3645 -4.0471 36 1 2.6160 -0.9407 -1.1763 37 1 4.1068 -1.2808 -2.0874 38 1 6.1776 -2.2159 -0.7629 39 1 6.1250 -0.5210 -0.2112 40 1 5.9689 -1.2258 2.1948 41 1 7.3770 -1.9593 1.3927 42 1 3.9693 -2.3668 2.7006 43 1 4.3352 -4.0607 3.3332 44 1 2.7541 -3.1215 0.0943 45 1 4.1253 -3.4891 -0.9757 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403642538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:25:30 Heat of formation + Delta-G solvation = -22.191562 kcal Electronic energy + Delta-G solvation = -22004.918849 eV Core-core repulsion = 19023.085966 eV Total energy + Delta-G solvation = -2981.832884 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.71586 -38.20018 -36.08644 -33.32672 -32.16245 -30.64477 -29.13611 -27.75991 -26.19012 -24.69509 -23.48448 -22.79693 -21.52000 -20.52773 -19.12674 -18.29515 -16.76906 -16.16870 -16.08168 -15.88944 -14.79920 -14.49608 -14.23181 -14.07759 -13.87514 -13.68537 -13.14715 -12.93063 -12.38017 -12.19938 -11.97778 -11.89026 -11.55107 -11.50101 -11.43284 -11.27157 -11.17117 -10.67028 -10.59039 -10.43547 -10.35137 -10.07450 -9.91055 -9.69797 -9.55586 -9.38443 -9.26415 -9.00275 -8.55202 -7.14148 -6.04075 -4.00448 3.27045 3.35942 3.39270 3.86707 4.13441 4.42917 4.75570 4.82089 4.99106 4.99857 5.25519 5.29765 5.32931 5.46010 5.51618 5.54274 5.58049 5.72062 5.75537 5.77833 5.80151 5.83743 5.88759 5.94460 6.00246 6.07291 6.19644 6.23457 6.28034 6.35345 6.39640 6.43063 6.52017 6.70606 6.78288 6.87609 6.92686 7.00089 7.07733 7.49667 7.67086 8.02631 8.16270 8.70983 9.05235 9.58865 11.09144 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021557 B = 0.005717 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.597622 B = 4896.593897 C = 5485.258902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.381 6.381 3 C 0.018 3.982 4 C 0.068 3.932 5 N -0.518 5.518 6 C 0.157 3.843 7 C -0.505 4.505 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.902 5.902 11 Si 0.871 3.129 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.267 1.267 15 C 0.048 3.952 16 C -0.080 4.080 17 H 0.072 0.928 18 C -0.109 4.109 19 C -0.090 4.090 20 C -0.146 4.146 21 H 0.094 0.906 22 C -0.186 4.186 23 C -0.137 4.137 24 H 0.092 0.908 25 C -0.081 4.081 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.077 0.923 29 H 0.040 0.960 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.094 0.906 33 H -0.011 1.011 34 H 0.025 0.975 35 H 0.263 0.737 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.062 0.938 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.667 -14.598 9.398 17.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.301 6.301 3 C -0.060 4.060 4 C -0.061 4.061 5 N -0.240 5.240 6 C 0.031 3.969 7 C -0.543 4.543 8 H 0.098 0.902 9 C -0.133 4.133 10 N -0.541 5.541 11 Si 0.699 3.301 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.191 1.191 15 C -0.080 4.080 16 C -0.098 4.098 17 H 0.090 0.910 18 C -0.147 4.147 19 C -0.128 4.128 20 C -0.164 4.164 21 H 0.112 0.888 22 C -0.223 4.223 23 C -0.155 4.155 24 H 0.110 0.890 25 C -0.118 4.118 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.095 0.905 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.007 0.993 34 H 0.043 0.957 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.113 0.887 43 H 0.102 0.898 44 H 0.081 0.919 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.014 -14.564 9.302 17.542 hybrid contribution -1.794 0.005 -0.846 1.983 sum -4.807 -14.559 8.456 17.510 Atomic orbital electron populations 1.22676 0.82932 1.01686 0.99582 1.87986 1.18300 1.28664 1.95115 1.23544 0.97136 0.84279 1.01044 1.22217 0.88803 1.01164 0.93913 1.62092 1.58259 1.00754 1.02905 1.20243 0.93552 0.94787 0.88351 1.21063 1.29598 0.95218 1.08470 0.90182 1.24883 0.95838 0.94812 0.97743 1.69890 1.44803 1.06500 1.32902 0.86923 0.81205 0.79315 0.82682 1.20549 1.21210 1.19134 1.22323 0.99305 0.89516 0.96841 1.21214 0.95729 0.93718 0.99160 0.90987 1.22059 0.95209 1.02778 0.94649 1.21573 0.99848 0.93662 0.97701 1.21924 0.91020 0.99136 1.04356 0.88822 1.22780 1.02032 1.02971 0.94470 1.21777 1.00842 0.98822 0.94072 0.89011 1.20833 0.99408 0.95041 0.96558 0.94657 0.94610 0.90458 0.94184 0.91466 0.91500 0.88755 0.99315 0.95672 0.92758 0.92538 0.92589 0.92191 0.89816 0.91417 0.92653 0.88705 0.89775 0.91907 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.48 16 2 O -0.38 -6.25 7.58 -35.23 -0.27 -6.52 16 3 C 0.02 0.31 5.70 37.16 0.21 0.52 16 4 C 0.07 1.26 5.46 -3.82 -0.02 1.24 16 5 N -0.52 -10.54 3.94 -236.08 -0.93 -11.46 16 6 C 0.16 3.75 3.44 -4.98 -0.02 3.73 16 7 C -0.51 -14.00 9.15 -34.44 -0.32 -14.31 16 8 H 0.08 2.41 7.33 -52.48 -0.38 2.02 16 9 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 10 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 11 Si 0.87 21.47 27.47 -169.99 -4.67 16.80 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 15 C 0.05 0.85 3.96 -3.83 -0.02 0.83 16 16 C -0.08 -1.17 1.70 -90.53 -0.15 -1.33 16 17 H 0.07 1.12 5.00 -51.93 -0.26 0.86 16 18 C -0.11 -1.60 5.42 -25.27 -0.14 -1.73 16 19 C -0.09 -1.13 5.81 -25.57 -0.15 -1.28 16 20 C -0.15 -1.68 6.13 -92.07 -0.56 -2.25 16 21 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 22 C -0.19 -2.07 9.47 -27.91 -0.26 -2.34 16 23 C -0.14 -1.59 6.08 -91.92 -0.56 -2.15 16 24 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 25 C -0.08 -1.04 5.22 -27.27 -0.14 -1.18 16 26 H 0.03 0.42 8.12 -51.93 -0.42 -0.01 16 27 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.04 0.64 8.12 -51.93 -0.42 0.21 16 30 H 0.07 1.36 5.79 -51.93 -0.30 1.06 16 31 H 0.07 1.13 5.81 -51.93 -0.30 0.82 16 32 H 0.09 1.91 7.03 -51.93 -0.37 1.54 16 33 H -0.01 -0.25 5.14 -51.93 -0.27 -0.52 16 34 H 0.03 0.63 7.06 -51.93 -0.37 0.26 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 36 H 0.06 1.03 5.26 -51.93 -0.27 0.76 16 37 H 0.06 1.01 8.04 -51.93 -0.42 0.59 16 38 H 0.06 0.87 8.04 -51.93 -0.42 0.45 16 39 H 0.08 1.42 7.38 -51.93 -0.38 1.03 16 40 H 0.07 0.85 7.98 -51.93 -0.41 0.44 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 1.14 7.21 -51.93 -0.37 0.76 16 43 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 334.49 15.07 5.04 5.04 Total: -1.00 -29.11 334.49 -9.08 -38.19 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -7.92 Total: 1.43 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -1.11 Total: -16.91 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: -0.16 Total: -38.03 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: -0.27 Total: -6.52 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.11 -9.08 -38.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403642538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.001 kcal (2) G-P(sol) polarization free energy of solvation -29.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds