Wall clock time and date at job start Mon Mar 30 2020 08:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 113.99939 * 2 1 4 4 C 1.53009 * 109.47095 * 174.99936 * 3 2 1 5 5 N 1.46903 * 109.46548 * 67.15466 * 4 3 2 6 6 C 1.46899 * 111.00104 * 53.99889 * 5 4 3 7 7 C 1.50698 * 109.47375 * 66.04155 * 6 5 4 8 8 H 1.08003 * 119.99805 * 359.72338 * 7 6 5 9 9 C 1.37872 * 120.00309 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00478 * 180.02562 * 9 7 6 11 11 Si 1.86806 * 119.99740 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.46574 * 90.00338 * 11 9 7 13 13 H 1.48500 * 109.47204 * 210.00164 * 11 9 7 14 14 H 1.48500 * 109.47083 * 330.00637 * 11 9 7 15 15 C 1.46898 * 111.00201 * 290.03889 * 5 4 3 16 16 C 1.52997 * 109.47133 * 299.21539 * 15 5 4 17 17 H 1.09004 * 109.61690 * 57.40375 * 16 15 5 18 18 C 1.53297 * 109.62190 * 296.85702 * 16 15 5 19 19 C 1.55453 * 106.46660 * 163.79395 * 18 16 15 20 20 C 1.52715 * 109.01569 * 58.14359 * 19 18 16 21 21 H 1.09001 * 115.38561 * 125.14545 * 20 19 18 22 22 C 1.51370 * 114.63179 * 266.17862 * 20 19 18 23 23 C 1.52061 * 120.52530 * 334.88138 * 20 19 18 24 24 H 1.09004 * 115.93373 * 151.11029 * 23 20 19 25 25 C 1.52071 * 120.02388 * 6.39010 * 23 20 19 26 26 H 1.08998 * 109.47392 * 304.96760 * 1 2 3 27 27 H 1.09003 * 109.46755 * 64.96878 * 1 2 3 28 28 H 1.09006 * 109.46849 * 184.96882 * 1 2 3 29 29 H 1.08996 * 109.47186 * 55.00115 * 3 2 1 30 30 H 1.08996 * 109.46992 * 294.99953 * 3 2 1 31 31 H 1.08996 * 109.46695 * 307.15454 * 4 3 2 32 32 H 1.08993 * 109.47093 * 187.15456 * 4 3 2 33 33 H 1.08998 * 109.46787 * 306.04012 * 6 5 4 34 34 H 1.08997 * 109.47000 * 186.04414 * 6 5 4 35 35 H 0.96994 * 120.00299 * 179.97438 * 10 9 7 36 36 H 1.09001 * 109.46808 * 59.21584 * 15 5 4 37 37 H 1.08996 * 109.47390 * 179.21741 * 15 5 4 38 38 H 1.08999 * 109.61667 * 285.56066 * 18 16 15 39 39 H 1.09005 * 109.61493 * 46.09776 * 18 16 15 40 40 H 1.09003 * 112.88261 * 296.40608 * 19 18 16 41 41 H 1.08991 * 106.79323 * 176.19122 * 19 18 16 42 42 H 1.08999 * 117.05513 * 4.66451 * 22 20 19 43 43 H 1.08998 * 117.72050 * 219.90518 * 22 20 19 44 44 H 1.09001 * 109.27203 * 219.25331 * 25 23 20 45 45 H 1.08996 * 109.23867 * 99.76484 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5305 1.1868 0.1257 5 7 4.0755 0.5679 -1.0900 6 6 3.6432 1.2957 -2.2905 7 6 4.2501 2.6751 -2.2875 8 1 4.8891 2.9821 -1.4727 9 6 3.9846 3.5474 -3.3217 10 7 4.5146 4.7510 -3.3193 11 14 2.8731 3.0190 -4.7271 12 1 1.4662 3.3664 -4.4028 13 1 3.2817 3.7190 -5.9713 14 1 2.9878 1.5516 -4.9241 15 6 3.7023 -0.8506 -1.1713 16 6 4.2704 -1.5975 0.0371 17 1 3.9035 -1.1399 0.9559 18 6 5.8019 -1.5394 0.0047 19 6 6.2880 -1.9320 1.4282 20 6 5.7576 -3.3230 1.7690 21 1 6.5130 -4.0523 2.0615 22 6 4.4506 -3.3302 2.5325 23 6 4.4979 -3.8538 1.1031 24 1 4.4384 -4.9364 0.9901 25 6 3.8370 -3.0626 -0.0149 26 1 -0.3634 0.5889 0.8421 27 1 -0.3633 0.4348 -0.9312 28 1 -0.3633 -1.0239 0.0890 29 1 1.6196 1.8771 0.8418 30 1 1.7613 1.8139 -0.9314 31 1 3.7765 0.5693 0.9896 32 1 3.9630 2.1791 0.2535 33 1 2.5563 1.3769 -2.2943 34 1 3.9704 0.7567 -3.1796 35 1 4.3281 5.3645 -4.0471 36 1 2.6160 -0.9407 -1.1763 37 1 4.1068 -1.2808 -2.0874 38 1 6.1776 -2.2159 -0.7629 39 1 6.1250 -0.5210 -0.2112 40 1 5.9689 -1.2258 2.1948 41 1 7.3770 -1.9593 1.3927 42 1 3.9693 -2.3668 2.7006 43 1 4.3352 -4.0607 3.3332 44 1 2.7541 -3.1215 0.0943 45 1 4.1253 -3.4891 -0.9757 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403642538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:25:30 Heat of formation + Delta-G solvation = -39.003304 kcal Electronic energy + Delta-G solvation = -22005.647861 eV Core-core repulsion = 19023.085966 eV Total energy + Delta-G solvation = -2982.561895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.84445 -39.51765 -37.48817 -34.97279 -33.91415 -31.70814 -30.75335 -29.44128 -27.35270 -26.07114 -24.73972 -24.39683 -22.73998 -21.70835 -20.62193 -19.37967 -18.86927 -17.55679 -17.44053 -16.96889 -16.37929 -15.95663 -15.83794 -15.31191 -15.17793 -14.87319 -14.56225 -14.20660 -14.09923 -13.55854 -13.33076 -13.18873 -12.96113 -12.89297 -12.76071 -12.59123 -12.54470 -12.39690 -11.97105 -11.87498 -11.78848 -11.51139 -11.37973 -11.29081 -10.89597 -10.77851 -10.59015 -10.43697 -10.30892 -8.77146 -8.26278 -6.27643 1.31161 1.34555 1.44951 2.34202 2.85168 2.97494 3.07434 3.39893 3.82385 3.90714 3.99834 4.17475 4.23149 4.30781 4.34371 4.37962 4.46306 4.50575 4.53714 4.58588 4.66008 4.73635 4.78003 4.81590 4.86105 4.86932 4.97187 5.05118 5.10837 5.14649 5.15335 5.24875 5.31597 5.33664 5.35525 5.44051 5.51474 5.61423 5.66110 5.72933 6.07860 6.23541 6.48636 6.75826 6.79031 7.36036 8.90227 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021557 B = 0.005717 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.597622 B = 4896.593897 C = 5485.258902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.390 6.390 3 C 0.028 3.972 4 C 0.071 3.929 5 N -0.529 5.529 6 C 0.170 3.830 7 C -0.506 4.506 8 H 0.041 0.959 9 C 0.012 3.988 10 N -0.947 5.947 11 Si 0.937 3.063 12 H -0.268 1.268 13 H -0.282 1.282 14 H -0.254 1.254 15 C 0.052 3.948 16 C -0.069 4.069 17 H 0.066 0.934 18 C -0.107 4.107 19 C -0.087 4.087 20 C -0.149 4.149 21 H 0.110 0.890 22 C -0.181 4.181 23 C -0.139 4.139 24 H 0.109 0.891 25 C -0.076 4.076 26 H 0.050 0.950 27 H 0.031 0.969 28 H 0.102 0.898 29 H 0.059 0.941 30 H 0.038 0.962 31 H 0.087 0.913 32 H 0.068 0.932 33 H -0.007 1.007 34 H 0.017 0.983 35 H 0.265 0.735 36 H 0.056 0.944 37 H 0.049 0.951 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.084 0.916 43 H 0.102 0.898 44 H 0.065 0.935 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.018 -17.176 9.971 20.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.309 6.309 3 C -0.050 4.050 4 C -0.058 4.058 5 N -0.252 5.252 6 C 0.042 3.958 7 C -0.544 4.544 8 H 0.060 0.940 9 C -0.185 4.185 10 N -0.588 5.588 11 Si 0.762 3.238 12 H -0.194 1.194 13 H -0.208 1.208 14 H -0.178 1.178 15 C -0.075 4.075 16 C -0.087 4.087 17 H 0.085 0.915 18 C -0.145 4.145 19 C -0.125 4.125 20 C -0.167 4.167 21 H 0.128 0.872 22 C -0.217 4.217 23 C -0.158 4.158 24 H 0.127 0.873 25 C -0.114 4.114 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.120 0.880 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.010 0.990 34 H 0.035 0.965 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.103 0.897 43 H 0.120 0.880 44 H 0.083 0.917 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.372 -17.164 9.893 20.288 hybrid contribution -1.346 0.821 -0.943 1.837 sum -5.718 -16.343 8.951 19.491 Atomic orbital electron populations 1.22901 0.80910 1.03601 1.00013 1.87944 1.20398 1.27454 1.95149 1.23253 0.96355 0.85098 1.00277 1.22118 0.89754 1.00068 0.93812 1.61994 1.58901 1.02115 1.02159 1.19962 0.93210 0.92863 0.89723 1.21245 1.28737 0.97196 1.07229 0.94030 1.25722 0.97468 0.94690 1.00626 1.70037 1.46746 1.07908 1.34150 0.85859 0.79401 0.79490 0.79079 1.19365 1.20764 1.17841 1.22351 0.99377 0.87786 0.98035 1.21096 0.95531 0.94823 0.97276 0.91534 1.21984 0.95235 1.01047 0.96221 1.21517 1.00317 0.94609 0.96043 1.21944 0.91557 0.98542 1.04674 0.87243 1.22806 1.01304 1.02915 0.94720 1.21803 1.00647 0.99539 0.93762 0.87254 1.20772 0.99686 0.93482 0.97486 0.93181 0.95048 0.88006 0.92291 0.94365 0.89512 0.91357 0.98997 0.96460 0.92576 0.92608 0.93272 0.92136 0.92803 0.91688 0.91987 0.89745 0.88002 0.91682 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 11.01 113.37 1.25 1.77 16 2 O -0.39 -12.12 7.58 -148.98 -1.13 -13.25 16 3 C 0.03 0.98 5.70 71.99 0.41 1.39 16 4 C 0.07 2.68 5.46 86.31 0.47 3.15 16 5 N -0.53 -21.89 3.94 -900.81 -3.55 -25.44 16 6 C 0.17 8.21 3.44 85.56 0.29 8.50 16 7 C -0.51 -29.01 9.15 25.60 0.23 -28.78 16 8 H 0.04 2.64 7.33 -2.91 -0.02 2.62 16 9 C 0.01 0.71 5.47 84.65 0.46 1.17 16 10 N -0.95 -59.10 13.96 21.45 0.30 -58.80 16 11 Si 0.94 44.50 27.47 68.60 1.88 46.38 16 12 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 13 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 14 H -0.25 -11.49 6.54 99.48 0.65 -10.84 16 15 C 0.05 1.80 3.96 86.30 0.34 2.14 16 16 C -0.07 -1.94 1.70 -10.74 -0.02 -1.96 16 17 H 0.07 1.97 5.00 -2.38 -0.01 1.96 16 18 C -0.11 -3.08 5.42 31.54 0.17 -2.91 16 19 C -0.09 -2.07 5.81 31.34 0.18 -1.89 16 20 C -0.15 -3.02 6.13 -11.73 -0.07 -3.10 16 21 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 22 C -0.18 -3.49 9.47 29.83 0.28 -3.21 16 23 C -0.14 -2.81 6.08 -11.64 -0.07 -2.88 16 24 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 25 C -0.08 -1.80 5.22 30.25 0.16 -1.64 16 26 H 0.05 1.05 8.12 -2.39 -0.02 1.03 16 27 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.10 1.93 8.14 -2.38 -0.02 1.91 16 29 H 0.06 1.81 8.12 -2.39 -0.02 1.79 16 30 H 0.04 1.56 5.79 -2.39 -0.01 1.54 16 31 H 0.09 2.90 5.81 -2.39 -0.01 2.89 16 32 H 0.07 2.91 7.03 -2.39 -0.02 2.89 16 33 H -0.01 -0.35 5.14 -2.39 -0.01 -0.37 16 34 H 0.02 0.86 7.06 -2.39 -0.02 0.85 16 35 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 36 H 0.06 1.97 5.26 -2.39 -0.01 1.96 16 37 H 0.05 1.75 8.04 -2.39 -0.02 1.73 16 38 H 0.06 1.71 8.04 -2.39 -0.02 1.69 16 39 H 0.05 1.86 7.38 -2.38 -0.02 1.84 16 40 H 0.06 1.57 7.98 -2.39 -0.02 1.55 16 41 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.08 1.83 7.21 -2.39 -0.02 1.81 16 43 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -63.75 334.49 2.49 -61.25 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.89 Total: 18.10 kcal Atomic # 6 Polarization: -32.34 SS G_CDS: 4.10 Total: -28.25 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -3.25 Total: -84.24 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -1.13 Total: -13.25 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.38 kcal Total: -63.75 2.49 -61.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403642538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.251 kcal (2) G-P(sol) polarization free energy of solvation -63.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds