Wall clock time and date at job start Mon Mar 30 2020 07:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99878 * 2 1 4 4 C 1.53000 * 109.47157 * 287.21324 * 3 2 1 5 5 O 1.42892 * 109.47382 * 67.06650 * 4 3 2 6 6 C 1.42905 * 114.00432 * 179.97438 * 5 4 3 7 7 C 1.50693 * 109.47345 * 179.97438 * 6 5 4 8 8 H 1.07997 * 120.00586 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99940 * 179.97438 * 7 6 5 10 10 N 1.31507 * 120.00291 * 180.02562 * 9 7 6 11 11 Si 1.86807 * 119.99695 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.46824 * 89.99935 * 11 9 7 13 13 H 1.48496 * 109.46940 * 209.99266 * 11 9 7 14 14 H 1.48492 * 109.47232 * 329.99593 * 11 9 7 15 15 C 1.46891 * 110.99998 * 123.95599 * 2 1 3 16 16 C 1.53004 * 109.47214 * 163.71606 * 15 2 1 17 17 H 1.08998 * 109.61451 * 56.40862 * 16 15 2 18 18 C 1.53305 * 109.61422 * 296.05456 * 16 15 2 19 19 C 1.52877 * 108.58236 * 165.82327 * 18 16 15 20 20 C 1.52713 * 110.15081 * 54.52124 * 19 18 16 21 21 H 1.08995 * 115.38763 * 127.17314 * 20 19 18 22 22 C 1.53651 * 116.03084 * 269.79806 * 20 19 18 23 23 C 1.49184 * 60.26520 * 111.29774 * 22 20 19 24 24 H 1.08993 * 116.23639 * 106.62621 * 23 22 20 25 25 C 1.52461 * 121.65831 * 250.87722 * 23 22 20 26 26 H 1.09002 * 109.47091 * 304.18029 * 1 2 3 27 27 H 1.08997 * 109.47542 * 64.17758 * 1 2 3 28 28 H 1.09002 * 109.47527 * 184.17961 * 1 2 3 29 29 H 1.09006 * 109.46799 * 47.20981 * 3 2 1 30 30 H 1.09000 * 109.46761 * 167.21162 * 3 2 1 31 31 H 1.09001 * 109.46670 * 187.06995 * 4 3 2 32 32 H 1.09000 * 109.46794 * 307.06383 * 4 3 2 33 33 H 1.08998 * 109.46979 * 300.00860 * 6 5 4 34 34 H 1.09006 * 109.46423 * 59.99918 * 6 5 4 35 35 H 0.96998 * 120.00500 * 180.02562 * 10 9 7 36 36 H 1.09005 * 109.47579 * 283.71342 * 15 2 1 37 37 H 1.08995 * 109.47405 * 43.71487 * 15 2 1 38 38 H 1.08996 * 109.61818 * 285.55383 * 18 16 15 39 39 H 1.09003 * 109.61769 * 46.09805 * 18 16 15 40 40 H 1.08995 * 109.35752 * 174.73223 * 19 18 16 41 41 H 1.09001 * 109.35547 * 294.45621 * 19 18 16 42 42 H 1.08997 * 117.53510 * 219.06070 * 22 20 19 43 43 H 1.08994 * 117.53977 * 4.23666 * 22 20 19 44 44 H 1.09004 * 108.36793 * 288.74391 * 25 23 22 45 45 H 1.08994 * 110.61702 * 169.02001 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.7797 2.0006 -1.3779 5 8 0.3804 2.1777 -1.6069 6 6 0.0679 2.7624 -2.8728 7 6 -1.4266 2.9012 -3.0069 8 1 -2.0733 2.5759 -2.2054 9 6 -1.9685 3.4445 -4.1524 10 7 -3.2727 3.5662 -4.2693 11 14 -0.8500 4.0079 -5.5385 12 1 -0.6212 2.8814 -6.4788 13 1 -1.4892 5.1354 -6.2631 14 1 0.4495 4.4544 -4.9755 15 6 1.9954 -0.7660 1.1375 16 6 3.4709 -1.0903 0.8949 17 1 4.0254 -0.1672 0.7258 18 6 3.6027 -2.0018 -0.3306 19 6 5.0682 -2.0246 -0.7654 20 6 5.9587 -2.4284 0.4076 21 1 6.6390 -3.2577 0.2140 22 6 6.4833 -1.2795 1.2826 23 6 5.4839 -2.2368 1.8395 24 1 5.8595 -2.9568 2.5665 25 6 4.0421 -1.8214 2.1098 26 1 -0.3633 0.5773 0.8502 27 1 -0.3634 0.4476 -0.9250 28 1 -0.3634 -1.0249 0.0749 29 1 1.4738 1.9608 0.7542 30 1 3.0612 1.3515 0.2275 31 1 2.2797 2.9683 -1.4177 32 1 2.1934 1.3460 -2.1449 33 1 0.5324 3.7459 -2.9433 34 1 0.4462 2.1238 -3.6712 35 1 -3.6540 3.9480 -5.0753 36 1 1.8982 -0.1761 2.0490 37 1 1.4322 -1.6932 1.2430 38 1 3.2818 -3.0109 -0.0723 39 1 2.9862 -1.6153 -1.1422 40 1 5.1930 -2.7411 -1.5773 41 1 5.3578 -1.0324 -1.1115 42 1 7.5087 -1.3502 1.6456 43 1 6.1330 -0.2726 1.0556 44 1 4.0331 -1.1517 2.9698 45 1 3.4258 -2.6936 2.3273 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403850033.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:52 Heat of formation + Delta-G solvation = -34.253873 kcal Electronic energy + Delta-G solvation = -20959.184234 eV Core-core repulsion = 17976.828290 eV Total energy + Delta-G solvation = -2982.355945 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.02927 -37.88747 -36.22701 -33.40212 -32.57621 -31.16251 -29.66189 -27.57029 -27.01332 -24.30410 -23.53461 -22.08371 -21.79953 -21.14263 -20.17320 -18.61660 -16.85751 -16.40847 -15.92787 -15.43527 -15.02901 -14.78699 -14.42475 -14.26359 -13.87102 -13.81573 -13.50825 -13.06567 -12.62916 -12.37903 -12.35427 -12.25417 -11.80193 -11.76210 -11.46051 -11.41095 -11.20413 -10.93144 -10.86798 -10.69126 -10.56853 -10.42381 -10.11791 -9.95729 -9.84642 -9.72549 -9.15613 -8.79458 -8.42594 -8.01180 -6.10908 -4.09730 3.25991 3.32871 3.34588 3.58544 4.11890 4.36632 4.41222 4.59044 4.64572 4.72753 4.90510 4.93516 5.14675 5.20930 5.21330 5.33723 5.41797 5.47498 5.49874 5.53135 5.56551 5.68068 5.74211 5.81549 5.84996 5.91255 5.96385 5.99688 5.99938 6.05520 6.09530 6.15429 6.19347 6.29904 6.40390 6.49267 6.63438 6.87299 7.03492 7.34241 7.41584 7.62243 8.04066 8.68021 8.99966 9.48869 11.02098 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.032555 B = 0.003595 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.873910 B = 7786.998683 C = 8203.836224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.533 5.533 3 C 0.059 3.941 4 C 0.063 3.937 5 O -0.377 6.377 6 C 0.168 3.832 7 C -0.517 4.517 8 H 0.082 0.918 9 C 0.072 3.928 10 N -0.896 5.896 11 Si 0.876 3.124 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.267 1.267 15 C 0.057 3.943 16 C -0.084 4.084 17 H 0.070 0.930 18 C -0.107 4.107 19 C -0.089 4.089 20 C -0.153 4.153 21 H 0.098 0.902 22 C -0.179 4.179 23 C -0.137 4.137 24 H 0.091 0.909 25 C -0.084 4.084 26 H 0.019 0.981 27 H 0.107 0.893 28 H 0.053 0.947 29 H 0.040 0.960 30 H 0.077 0.923 31 H 0.039 0.961 32 H 0.047 0.953 33 H 0.001 0.999 34 H -0.001 1.001 35 H 0.266 0.734 36 H 0.029 0.971 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.061 0.939 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.342 -11.219 11.343 24.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.257 5.257 3 C -0.069 4.069 4 C -0.015 4.015 5 O -0.296 6.296 6 C 0.093 3.907 7 C -0.555 4.555 8 H 0.100 0.900 9 C -0.130 4.130 10 N -0.535 5.535 11 Si 0.703 3.297 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.191 1.191 15 C -0.072 4.072 16 C -0.103 4.103 17 H 0.088 0.912 18 C -0.145 4.145 19 C -0.126 4.126 20 C -0.171 4.171 21 H 0.116 0.884 22 C -0.216 4.216 23 C -0.155 4.155 24 H 0.109 0.891 25 C -0.122 4.122 26 H 0.038 0.962 27 H 0.125 0.875 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.018 0.982 34 H 0.016 0.984 35 H 0.076 0.924 36 H 0.047 0.953 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.107 0.893 43 H 0.112 0.888 44 H 0.080 0.920 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 18.192 -11.426 10.918 24.098 hybrid contribution 0.535 0.814 -0.146 0.985 sum 18.727 -10.612 10.773 24.070 Atomic orbital electron populations 1.22655 0.85769 1.00382 1.03842 1.61970 1.09107 1.13087 1.41580 1.22183 0.99231 0.88700 0.96805 1.22340 0.85550 0.97576 0.96036 1.87892 1.20210 1.82688 1.38831 1.20580 0.97443 0.91428 0.81279 1.20888 0.89251 1.41351 1.04047 0.90034 1.24769 0.95004 0.95259 0.97946 1.69870 1.10262 1.45149 1.28197 0.86849 0.81289 0.78954 0.82653 1.19912 1.20866 1.19132 1.22156 0.95220 0.97964 0.91812 1.21223 0.95221 0.98703 0.95141 0.91193 1.21537 0.95525 0.99059 0.98373 1.21049 0.94764 1.01211 0.95587 1.22237 1.02684 1.00163 0.91999 0.88412 1.22598 0.98450 0.95756 1.04789 1.21288 0.95797 1.02459 0.95964 0.89067 1.20966 0.93207 1.00233 0.97804 0.96242 0.87455 0.92848 0.94210 0.90491 0.94297 0.93473 0.98172 0.98359 0.92397 0.95255 0.91071 0.92450 0.89796 0.91837 0.91812 0.89297 0.88801 0.92034 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.08 60.06 0.55 0.89 16 2 N -0.53 -7.79 3.90 -242.91 -0.95 -8.73 16 3 C 0.06 0.87 5.36 -3.82 -0.02 0.85 16 4 C 0.06 1.11 6.23 37.16 0.23 1.34 16 5 O -0.38 -8.54 7.41 -35.23 -0.26 -8.80 16 6 C 0.17 4.25 4.76 36.00 0.17 4.42 16 7 C -0.52 -15.27 9.99 -34.44 -0.34 -15.61 16 8 H 0.08 2.62 8.06 -52.49 -0.42 2.20 16 9 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 10 N -0.90 -27.65 13.96 55.43 0.77 -26.87 16 11 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 15 C 0.06 0.66 4.39 -3.83 -0.02 0.65 16 16 C -0.08 -0.86 1.94 -90.53 -0.18 -1.04 16 17 H 0.07 0.76 5.46 -51.93 -0.28 0.48 16 18 C -0.11 -1.14 5.25 -26.64 -0.14 -1.28 16 19 C -0.09 -0.85 5.84 -26.94 -0.16 -1.01 16 20 C -0.15 -1.35 6.29 -90.90 -0.57 -1.92 16 21 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 22 C -0.18 -1.51 9.56 -28.27 -0.27 -1.78 16 23 C -0.14 -1.17 5.82 -93.24 -0.54 -1.71 16 24 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 25 C -0.08 -0.75 5.28 -27.08 -0.14 -0.89 16 26 H 0.02 0.31 8.02 -51.93 -0.42 -0.10 16 27 H 0.11 2.16 5.65 -51.93 -0.29 1.87 16 28 H 0.05 0.78 7.90 -51.93 -0.41 0.37 16 29 H 0.04 0.62 7.96 -51.93 -0.41 0.21 16 30 H 0.08 0.96 6.27 -51.93 -0.33 0.63 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.00 0.01 7.20 -51.93 -0.37 -0.36 16 34 H 0.00 -0.03 7.57 -51.93 -0.39 -0.42 16 35 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 36 H 0.03 0.34 8.05 -51.93 -0.42 -0.08 16 37 H 0.07 0.81 7.83 -51.93 -0.41 0.40 16 38 H 0.06 0.60 8.04 -51.93 -0.42 0.18 16 39 H 0.08 1.06 7.41 -51.93 -0.38 0.67 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.64 8.05 -51.93 -0.42 0.22 16 42 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 0.84 7.27 -51.93 -0.38 0.46 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 342.92 15.07 5.17 5.17 Total: -1.00 -30.28 342.92 -9.77 -40.05 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -8.30 Total: -2.55 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -1.53 Total: -15.09 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: -0.17 Total: -35.60 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: -0.26 Total: -8.80 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.28 -9.77 -40.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403850033.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.796 kcal (2) G-P(sol) polarization free energy of solvation -30.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds