Wall clock time and date at job start Mon Mar 30 2020 07:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99878 * 2 1 4 4 C 1.53000 * 109.47157 * 287.21324 * 3 2 1 5 5 O 1.42892 * 109.47382 * 67.06650 * 4 3 2 6 6 C 1.42905 * 114.00432 * 179.97438 * 5 4 3 7 7 C 1.50693 * 109.47345 * 179.97438 * 6 5 4 8 8 H 1.07997 * 120.00586 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99940 * 179.97438 * 7 6 5 10 10 N 1.31507 * 120.00291 * 180.02562 * 9 7 6 11 11 Si 1.86807 * 119.99695 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.46824 * 89.99935 * 11 9 7 13 13 H 1.48496 * 109.46940 * 209.99266 * 11 9 7 14 14 H 1.48492 * 109.47232 * 329.99593 * 11 9 7 15 15 C 1.46891 * 110.99998 * 123.95599 * 2 1 3 16 16 C 1.53004 * 109.47214 * 163.71606 * 15 2 1 17 17 H 1.08998 * 109.61451 * 56.40862 * 16 15 2 18 18 C 1.53305 * 109.61422 * 296.05456 * 16 15 2 19 19 C 1.52877 * 108.58236 * 165.82327 * 18 16 15 20 20 C 1.52713 * 110.15081 * 54.52124 * 19 18 16 21 21 H 1.08995 * 115.38763 * 127.17314 * 20 19 18 22 22 C 1.53651 * 116.03084 * 269.79806 * 20 19 18 23 23 C 1.49184 * 60.26520 * 111.29774 * 22 20 19 24 24 H 1.08993 * 116.23639 * 106.62621 * 23 22 20 25 25 C 1.52461 * 121.65831 * 250.87722 * 23 22 20 26 26 H 1.09002 * 109.47091 * 304.18029 * 1 2 3 27 27 H 1.08997 * 109.47542 * 64.17758 * 1 2 3 28 28 H 1.09002 * 109.47527 * 184.17961 * 1 2 3 29 29 H 1.09006 * 109.46799 * 47.20981 * 3 2 1 30 30 H 1.09000 * 109.46761 * 167.21162 * 3 2 1 31 31 H 1.09001 * 109.46670 * 187.06995 * 4 3 2 32 32 H 1.09000 * 109.46794 * 307.06383 * 4 3 2 33 33 H 1.08998 * 109.46979 * 300.00860 * 6 5 4 34 34 H 1.09006 * 109.46423 * 59.99918 * 6 5 4 35 35 H 0.96998 * 120.00500 * 180.02562 * 10 9 7 36 36 H 1.09005 * 109.47579 * 283.71342 * 15 2 1 37 37 H 1.08995 * 109.47405 * 43.71487 * 15 2 1 38 38 H 1.08996 * 109.61818 * 285.55383 * 18 16 15 39 39 H 1.09003 * 109.61769 * 46.09805 * 18 16 15 40 40 H 1.08995 * 109.35752 * 174.73223 * 19 18 16 41 41 H 1.09001 * 109.35547 * 294.45621 * 19 18 16 42 42 H 1.08997 * 117.53510 * 219.06070 * 22 20 19 43 43 H 1.08994 * 117.53977 * 4.23666 * 22 20 19 44 44 H 1.09004 * 108.36793 * 288.74391 * 25 23 22 45 45 H 1.08994 * 110.61702 * 169.02001 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.7797 2.0006 -1.3779 5 8 0.3804 2.1777 -1.6069 6 6 0.0679 2.7624 -2.8728 7 6 -1.4266 2.9012 -3.0069 8 1 -2.0733 2.5759 -2.2054 9 6 -1.9685 3.4445 -4.1524 10 7 -3.2727 3.5662 -4.2693 11 14 -0.8500 4.0079 -5.5385 12 1 -0.6212 2.8814 -6.4788 13 1 -1.4892 5.1354 -6.2631 14 1 0.4495 4.4544 -4.9755 15 6 1.9954 -0.7660 1.1375 16 6 3.4709 -1.0903 0.8949 17 1 4.0254 -0.1672 0.7258 18 6 3.6027 -2.0018 -0.3306 19 6 5.0682 -2.0246 -0.7654 20 6 5.9587 -2.4284 0.4076 21 1 6.6390 -3.2577 0.2140 22 6 6.4833 -1.2795 1.2826 23 6 5.4839 -2.2368 1.8395 24 1 5.8595 -2.9568 2.5665 25 6 4.0421 -1.8214 2.1098 26 1 -0.3633 0.5773 0.8502 27 1 -0.3634 0.4476 -0.9250 28 1 -0.3634 -1.0249 0.0749 29 1 1.4738 1.9608 0.7542 30 1 3.0612 1.3515 0.2275 31 1 2.2797 2.9683 -1.4177 32 1 2.1934 1.3460 -2.1449 33 1 0.5324 3.7459 -2.9433 34 1 0.4462 2.1238 -3.6712 35 1 -3.6540 3.9480 -5.0753 36 1 1.8982 -0.1761 2.0490 37 1 1.4322 -1.6932 1.2430 38 1 3.2818 -3.0109 -0.0723 39 1 2.9862 -1.6153 -1.1422 40 1 5.1930 -2.7411 -1.5773 41 1 5.3578 -1.0324 -1.1115 42 1 7.5087 -1.3502 1.6456 43 1 6.1330 -0.2726 1.0556 44 1 4.0331 -1.1517 2.9698 45 1 3.4258 -2.6936 2.3273 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403850033.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:51 Heat of formation + Delta-G solvation = -51.662518 kcal Electronic energy + Delta-G solvation = -20959.939130 eV Core-core repulsion = 17976.828290 eV Total energy + Delta-G solvation = -2983.110840 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.80279 -39.23456 -37.67041 -34.90046 -34.20005 -31.95575 -31.18996 -29.46862 -28.04172 -25.28580 -24.60218 -23.88947 -23.06862 -21.93043 -21.20041 -19.36926 -19.02992 -17.53467 -17.33413 -16.72448 -16.52465 -16.04670 -15.79717 -15.25237 -15.11019 -14.89957 -14.63489 -14.43666 -14.05378 -13.89905 -13.54807 -13.15071 -13.06641 -13.01374 -12.81231 -12.63915 -12.45804 -12.44757 -12.07411 -11.84306 -11.81786 -11.63136 -11.48561 -11.28120 -11.02109 -10.89822 -10.64850 -10.41311 -10.24980 -9.20199 -8.36560 -6.43757 1.33550 1.36157 1.46969 2.29731 2.91691 2.96332 3.00429 3.13450 3.73356 3.80943 3.89554 4.10768 4.14576 4.22097 4.34703 4.39950 4.45196 4.50480 4.54686 4.56879 4.64592 4.66339 4.69268 4.73571 4.81377 4.83463 4.89114 4.95390 5.01894 5.04241 5.09938 5.12170 5.28589 5.30996 5.37634 5.38096 5.43748 5.51918 5.58230 5.63879 5.95147 6.11876 6.26872 6.60235 6.77532 7.20830 8.80430 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.032555 B = 0.003595 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.873910 B = 7786.998683 C = 8203.836224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.539 5.539 3 C 0.065 3.935 4 C 0.055 3.945 5 O -0.395 6.395 6 C 0.179 3.821 7 C -0.540 4.540 8 H 0.032 0.968 9 C 0.013 3.987 10 N -0.943 5.943 11 Si 0.954 3.046 12 H -0.261 1.261 13 H -0.274 1.274 14 H -0.247 1.247 15 C 0.059 3.941 16 C -0.076 4.076 17 H 0.067 0.933 18 C -0.104 4.104 19 C -0.087 4.087 20 C -0.159 4.159 21 H 0.106 0.894 22 C -0.178 4.178 23 C -0.137 4.137 24 H 0.102 0.898 25 C -0.081 4.081 26 H 0.013 0.987 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.031 0.969 30 H 0.108 0.892 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.009 0.991 34 H 0.007 0.993 35 H 0.272 0.728 36 H 0.035 0.965 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.100 0.900 43 H 0.088 0.912 44 H 0.067 0.933 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.255 -11.541 11.363 26.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.263 5.263 3 C -0.063 4.063 4 C -0.022 4.022 5 O -0.315 6.315 6 C 0.103 3.897 7 C -0.578 4.578 8 H 0.050 0.950 9 C -0.185 4.185 10 N -0.582 5.582 11 Si 0.775 3.225 12 H -0.185 1.185 13 H -0.199 1.199 14 H -0.170 1.170 15 C -0.069 4.069 16 C -0.095 4.095 17 H 0.085 0.915 18 C -0.142 4.142 19 C -0.125 4.125 20 C -0.177 4.177 21 H 0.124 0.876 22 C -0.214 4.214 23 C -0.156 4.156 24 H 0.120 0.880 25 C -0.119 4.119 26 H 0.032 0.968 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.049 0.951 30 H 0.126 0.874 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.026 0.974 34 H 0.025 0.975 35 H 0.081 0.919 36 H 0.053 0.947 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.118 0.882 43 H 0.107 0.893 44 H 0.086 0.914 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 21.122 -11.762 10.965 26.547 hybrid contribution -0.421 0.850 -0.054 0.950 sum 20.702 -10.912 10.911 25.820 Atomic orbital electron populations 1.22445 0.87305 1.00736 1.01365 1.61948 1.07751 1.13270 1.43316 1.22176 1.00873 0.88454 0.94779 1.22660 0.82923 0.98826 0.97805 1.87902 1.23620 1.82541 1.37454 1.20275 0.94480 0.92086 0.82830 1.21149 0.91415 1.41974 1.03284 0.95010 1.25817 0.96786 0.94885 1.01021 1.70025 1.12668 1.46029 1.29507 0.85630 0.79461 0.78924 0.78460 1.18522 1.19898 1.17010 1.22213 0.96179 0.97676 0.90811 1.21147 0.93965 0.98655 0.95737 0.91512 1.21468 0.95927 0.99013 0.97786 1.21011 0.94156 1.01085 0.96203 1.22254 1.02878 1.00781 0.91785 0.87566 1.22637 0.99063 0.95319 1.04430 1.21342 0.95548 1.02720 0.95958 0.87962 1.20943 0.93499 1.00375 0.97109 0.96823 0.91488 0.91366 0.95058 0.87444 0.92720 0.93106 0.97350 0.97522 0.91864 0.94720 0.90627 0.92338 0.92034 0.91537 0.92336 0.88176 0.89338 0.91406 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.99 9.08 127.69 1.16 2.15 16 2 N -0.54 -15.36 3.90 -922.44 -3.59 -18.95 16 3 C 0.07 1.84 5.36 86.30 0.46 2.31 16 4 C 0.05 1.88 6.23 71.98 0.45 2.33 16 5 O -0.40 -18.17 7.41 -148.98 -1.10 -19.27 16 6 C 0.18 9.04 4.76 71.23 0.34 9.38 16 7 C -0.54 -32.99 9.99 25.60 0.26 -32.74 16 8 H 0.03 2.17 8.06 -2.91 -0.02 2.15 16 9 C 0.01 0.76 5.47 84.66 0.46 1.22 16 10 N -0.94 -59.66 13.96 21.45 0.30 -59.36 16 11 Si 0.95 43.83 27.47 68.60 1.88 45.71 16 12 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 13 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 14 H -0.25 -10.47 6.54 99.48 0.65 -9.82 16 15 C 0.06 1.29 4.39 86.31 0.38 1.66 16 16 C -0.08 -1.41 1.94 -10.74 -0.02 -1.43 16 17 H 0.07 1.29 5.46 -2.39 -0.01 1.28 16 18 C -0.10 -2.07 5.25 30.66 0.16 -1.91 16 19 C -0.09 -1.53 5.84 30.46 0.18 -1.35 16 20 C -0.16 -2.43 6.29 -10.98 -0.07 -2.50 16 21 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 22 C -0.18 -2.55 9.56 29.60 0.28 -2.27 16 23 C -0.14 -1.98 5.82 -12.49 -0.07 -2.06 16 24 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 25 C -0.08 -1.24 5.28 30.37 0.16 -1.08 16 26 H 0.01 0.45 8.02 -2.39 -0.02 0.43 16 27 H 0.07 2.83 5.65 -2.39 -0.01 2.82 16 28 H 0.07 2.01 7.90 -2.39 -0.02 2.00 16 29 H 0.03 0.95 7.96 -2.38 -0.02 0.93 16 30 H 0.11 2.40 6.27 -2.39 -0.01 2.39 16 31 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.01 0.43 7.20 -2.39 -0.02 0.41 16 34 H 0.01 0.34 7.57 -2.38 -0.02 0.32 16 35 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 36 H 0.03 0.74 8.05 -2.38 -0.02 0.72 16 37 H 0.08 1.60 7.83 -2.39 -0.02 1.58 16 38 H 0.06 1.14 8.04 -2.39 -0.02 1.12 16 39 H 0.06 1.51 7.41 -2.39 -0.02 1.49 16 40 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.06 1.08 8.05 -2.39 -0.02 1.06 16 42 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.09 1.37 7.27 -2.39 -0.02 1.35 16 44 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 45 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -67.11 342.92 2.48 -64.63 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.87 Total: 13.53 kcal Atomic # 6 Polarization: -30.41 SS G_CDS: 4.13 Total: -26.28 kcal Atomic # 7 Polarization: -75.02 SS G_CDS: -3.29 Total: -78.31 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -1.10 Total: -19.27 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.88 Total: 45.71 kcal Total: -67.11 2.48 -64.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403850033.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.969 kcal (2) G-P(sol) polarization free energy of solvation -67.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds