Wall clock time and date at job start Mon Mar 30 2020 07:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46895 * 110.99758 * 2 1 4 4 C 1.53001 * 109.46923 * 283.76859 * 3 2 1 5 5 O 1.42902 * 109.46956 * 62.36590 * 4 3 2 6 6 C 1.42904 * 113.99670 * 179.97438 * 5 4 3 7 7 C 1.50705 * 109.46772 * 179.97438 * 6 5 4 8 8 H 1.07994 * 119.99805 * 0.02562 * 7 6 5 9 9 C 1.37871 * 119.99719 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00238 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99774 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47176 * 0.02562 * 11 9 7 13 13 H 1.48508 * 109.47016 * 120.00260 * 11 9 7 14 14 H 1.48498 * 109.47221 * 240.00024 * 11 9 7 15 15 C 1.46898 * 110.99752 * 123.95350 * 2 1 3 16 16 C 1.53000 * 109.47221 * 163.67926 * 15 2 1 17 17 H 1.09001 * 109.61487 * 55.63431 * 16 15 2 18 18 C 1.53299 * 109.61754 * 295.27698 * 16 15 2 19 19 C 1.52873 * 108.59219 * 165.82451 * 18 16 15 20 20 C 1.52082 * 110.51003 * 54.88741 * 19 18 16 21 21 H 1.09004 * 114.63504 * 193.15352 * 20 19 18 22 22 C 1.52305 * 119.84012 * 49.55799 * 20 19 18 23 23 C 1.52063 * 120.02200 * 338.29971 * 20 19 18 24 24 H 1.08995 * 117.25252 * 216.66086 * 23 20 19 25 25 C 1.52752 * 120.59100 * 5.10581 * 23 20 19 26 26 H 1.08997 * 109.47082 * 65.82235 * 1 2 3 27 27 H 1.08998 * 109.47314 * 305.82352 * 1 2 3 28 28 H 1.09001 * 109.46919 * 185.82161 * 1 2 3 29 29 H 1.09003 * 109.47223 * 43.77201 * 3 2 1 30 30 H 1.09002 * 109.46945 * 163.77023 * 3 2 1 31 31 H 1.09002 * 109.46781 * 182.36249 * 4 3 2 32 32 H 1.08999 * 109.47264 * 302.35922 * 4 3 2 33 33 H 1.09003 * 109.47220 * 299.99834 * 6 5 4 34 34 H 1.08999 * 109.47032 * 60.00100 * 6 5 4 35 35 H 0.97002 * 120.00313 * 180.02562 * 10 9 7 36 36 H 1.09004 * 109.47056 * 283.67613 * 15 2 1 37 37 H 1.08997 * 109.47492 * 43.68044 * 15 2 1 38 38 H 1.08994 * 109.61647 * 285.55542 * 18 16 15 39 39 H 1.08999 * 109.61858 * 46.09446 * 18 16 15 40 40 H 1.09002 * 109.26994 * 175.15215 * 19 18 16 41 41 H 1.08999 * 109.27094 * 294.65987 * 19 18 16 42 42 H 1.09005 * 117.53386 * 357.55101 * 22 20 19 43 43 H 1.08998 * 117.53981 * 142.79906 * 22 20 19 44 44 H 1.08995 * 109.51956 * 218.56754 * 25 23 20 45 45 H 1.09007 * 109.21889 * 98.97592 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.8576 1.9705 -1.4011 5 8 0.4750 2.0401 -1.7555 6 6 0.2345 2.5887 -3.0529 7 6 -1.2484 2.6139 -3.3206 8 1 -1.9380 2.2481 -2.5744 9 6 -1.7244 3.1041 -4.5181 10 7 -0.8845 3.5491 -5.4269 11 14 -3.5624 3.1346 -4.8502 12 1 -4.2866 2.5819 -3.6776 13 1 -3.9995 4.5341 -5.0867 14 1 -3.8624 2.3130 -6.0502 15 6 1.9954 -0.7660 1.1376 16 6 3.4706 -1.0911 0.8947 17 1 4.0231 -0.1695 0.7115 18 6 3.6001 -2.0187 -0.3189 19 6 5.0642 -2.0451 -0.7582 20 6 5.9623 -2.4382 0.4045 21 1 7.0251 -2.2630 0.2370 22 6 5.6290 -3.6693 1.2370 23 6 5.4765 -2.2619 1.8346 24 1 6.2124 -1.9538 2.5773 25 6 4.0482 -1.8011 2.1191 26 1 -0.3633 0.4209 -0.9375 27 1 -0.3634 0.6015 0.8332 28 1 -0.3633 -1.0224 0.1042 29 1 1.4328 1.9765 0.7109 30 1 3.0468 1.3570 0.2872 31 1 2.2863 2.9727 -1.4114 32 1 2.3855 1.3422 -2.1185 33 1 0.6294 3.6037 -3.0971 34 1 0.7287 1.9735 -3.8048 35 1 -1.2194 3.8943 -6.2693 36 1 1.8988 -0.1758 2.0489 37 1 1.4318 -1.6929 1.2435 38 1 3.2818 -3.0248 -0.0462 39 1 2.9804 -1.6442 -1.1336 40 1 5.1845 -2.7672 -1.5658 41 1 5.3507 -1.0557 -1.1147 42 1 4.7174 -4.2132 0.9895 43 1 6.4606 -4.2792 1.5899 44 1 4.0486 -1.1163 2.9671 45 1 3.4323 -2.6681 2.3580 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403850035.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:56 Heat of formation + Delta-G solvation = -39.037056 kcal Electronic energy + Delta-G solvation = -20893.493024 eV Core-core repulsion = 17910.929665 eV Total energy + Delta-G solvation = -2982.563359 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.87399 -37.75115 -36.03932 -33.28769 -32.60506 -31.08109 -29.44835 -27.05347 -26.76469 -24.42836 -23.51164 -22.22224 -21.69573 -21.30943 -20.06561 -18.49441 -16.44590 -16.36867 -15.83173 -15.40100 -14.93896 -14.75960 -14.23518 -14.12128 -13.94917 -13.76705 -13.38486 -12.90287 -12.73030 -12.33634 -12.15817 -11.96856 -11.79301 -11.63472 -11.34476 -11.21939 -11.11109 -10.79549 -10.77033 -10.70282 -10.63270 -10.34772 -10.22091 -9.88393 -9.81903 -9.70336 -9.03644 -8.76079 -8.11439 -7.92920 -6.08534 -4.09944 3.30178 3.36723 3.42747 3.58195 4.19318 4.37063 4.46228 4.65416 4.70913 4.91350 4.92545 5.03070 5.16584 5.22597 5.28116 5.33808 5.47223 5.54526 5.57628 5.60632 5.70300 5.71114 5.77592 5.81053 5.83254 5.97465 6.01820 6.03023 6.13044 6.13944 6.19852 6.20530 6.25660 6.41517 6.46531 6.54195 6.91875 7.17831 7.40228 7.48176 7.50337 7.81813 8.19427 8.63097 9.04280 9.54954 11.03062 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.035576 B = 0.003372 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.865692 B = 8302.095756 C = 8536.832741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.531 5.531 3 C 0.059 3.941 4 C 0.069 3.931 5 O -0.390 6.390 6 C 0.194 3.806 7 C -0.512 4.512 8 H 0.066 0.934 9 C 0.055 3.945 10 N -0.898 5.898 11 Si 0.906 3.094 12 H -0.271 1.271 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.056 3.944 16 C -0.081 4.081 17 H 0.072 0.928 18 C -0.110 4.110 19 C -0.090 4.090 20 C -0.137 4.137 21 H 0.093 0.907 22 C -0.186 4.186 23 C -0.147 4.147 24 H 0.097 0.903 25 C -0.084 4.084 26 H 0.108 0.892 27 H 0.016 0.984 28 H 0.051 0.949 29 H 0.037 0.963 30 H 0.076 0.924 31 H 0.036 0.964 32 H 0.044 0.956 33 H 0.002 0.998 34 H 0.005 0.995 35 H 0.263 0.737 36 H 0.028 0.972 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.086 0.914 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.062 0.938 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.325 -11.499 14.097 21.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.255 5.255 3 C -0.069 4.069 4 C -0.009 4.009 5 O -0.311 6.311 6 C 0.120 3.880 7 C -0.550 4.550 8 H 0.084 0.916 9 C -0.146 4.146 10 N -0.538 5.538 11 Si 0.733 3.267 12 H -0.195 1.195 13 H -0.209 1.209 14 H -0.209 1.209 15 C -0.072 4.072 16 C -0.100 4.100 17 H 0.091 0.909 18 C -0.147 4.147 19 C -0.127 4.127 20 C -0.155 4.155 21 H 0.111 0.889 22 C -0.223 4.223 23 C -0.165 4.165 24 H 0.115 0.885 25 C -0.122 4.122 26 H 0.127 0.873 27 H 0.035 0.965 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.020 0.980 34 H 0.023 0.977 35 H 0.072 0.928 36 H 0.046 0.954 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.104 0.896 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.113 0.887 43 H 0.106 0.894 44 H 0.081 0.919 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.322 -11.713 13.608 21.776 hybrid contribution -0.800 0.566 0.330 1.034 sum 11.522 -11.146 13.938 21.243 Atomic orbital electron populations 1.22658 0.86023 1.00036 1.03800 1.61927 1.08932 1.13249 1.41381 1.22215 0.99212 0.88612 0.96870 1.22248 0.86332 0.97535 0.94825 1.87819 1.21146 1.84284 1.37802 1.20175 0.96883 0.92248 0.78703 1.21090 0.91301 1.41223 1.01371 0.91613 1.24946 0.98622 0.95267 0.95721 1.69973 1.34302 1.42184 1.07311 0.86316 0.84433 0.77669 0.78274 1.19515 1.20929 1.20865 1.22176 0.95333 0.97870 0.91838 1.21178 0.95039 0.98829 0.94920 0.90940 1.21568 0.95701 0.98791 0.98680 1.20877 0.94633 1.01430 0.95776 1.21855 0.99666 1.01740 0.92262 0.88876 1.23121 1.03238 0.90705 1.05219 1.22171 0.98180 0.99702 0.96445 0.88487 1.21071 0.93380 0.99971 0.97755 0.87349 0.96517 0.93026 0.94444 0.90581 0.94545 0.93778 0.98005 0.97708 0.92767 0.95370 0.91257 0.92721 0.89586 0.91784 0.91459 0.88728 0.89408 0.91914 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.16 60.07 0.55 0.92 16 2 N -0.53 -8.05 3.91 -242.92 -0.95 -9.00 16 3 C 0.06 0.91 5.40 -3.83 -0.02 0.89 16 4 C 0.07 1.29 6.29 37.16 0.23 1.52 16 5 O -0.39 -9.22 7.36 -35.23 -0.26 -9.47 16 6 C 0.19 5.32 5.69 36.01 0.20 5.53 16 7 C -0.51 -14.98 9.43 -34.44 -0.32 -15.30 16 8 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 9 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 10 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 11 Si 0.91 21.87 29.54 -169.99 -5.02 16.85 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 C 0.06 0.68 4.37 -3.83 -0.02 0.66 16 16 C -0.08 -0.87 2.16 -90.53 -0.20 -1.07 16 17 H 0.07 0.84 6.37 -51.93 -0.33 0.51 16 18 C -0.11 -1.23 5.02 -26.64 -0.13 -1.37 16 19 C -0.09 -0.92 5.93 -27.26 -0.16 -1.08 16 20 C -0.14 -1.27 6.00 -91.92 -0.55 -1.82 16 21 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 22 C -0.19 -1.60 9.67 -26.74 -0.26 -1.86 16 23 C -0.15 -1.31 6.18 -90.88 -0.56 -1.88 16 24 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 25 C -0.08 -0.78 5.14 -26.92 -0.14 -0.91 16 26 H 0.11 2.20 5.62 -51.93 -0.29 1.91 16 27 H 0.02 0.26 7.96 -51.93 -0.41 -0.15 16 28 H 0.05 0.75 7.86 -51.93 -0.41 0.35 16 29 H 0.04 0.60 7.87 -51.93 -0.41 0.19 16 30 H 0.08 1.00 6.22 -51.93 -0.32 0.68 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 34 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.03 0.33 8.05 -51.93 -0.42 -0.08 16 37 H 0.07 0.81 7.80 -51.93 -0.41 0.41 16 38 H 0.05 0.59 7.11 -51.93 -0.37 0.22 16 39 H 0.09 1.16 7.44 -51.93 -0.39 0.77 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.09 0.84 7.26 -51.93 -0.38 0.46 16 43 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.58 8.06 -51.93 -0.42 0.16 16 LS Contribution 346.51 15.07 5.22 5.22 Total: -1.00 -29.94 346.51 -10.07 -40.00 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -8.32 Total: -3.06 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -1.47 Total: -14.27 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: -0.21 Total: -35.28 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -0.26 Total: -9.47 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.94 -10.07 -40.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403850035.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.966 kcal (2) G-P(sol) polarization free energy of solvation -29.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds