Wall clock time and date at job start Mon Mar 30 2020 07:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46895 * 110.99758 * 2 1 4 4 C 1.53001 * 109.46923 * 283.76859 * 3 2 1 5 5 O 1.42902 * 109.46956 * 62.36590 * 4 3 2 6 6 C 1.42904 * 113.99670 * 179.97438 * 5 4 3 7 7 C 1.50705 * 109.46772 * 179.97438 * 6 5 4 8 8 H 1.07994 * 119.99805 * 0.02562 * 7 6 5 9 9 C 1.37871 * 119.99719 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00238 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99774 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47176 * 0.02562 * 11 9 7 13 13 H 1.48508 * 109.47016 * 120.00260 * 11 9 7 14 14 H 1.48498 * 109.47221 * 240.00024 * 11 9 7 15 15 C 1.46898 * 110.99752 * 123.95350 * 2 1 3 16 16 C 1.53000 * 109.47221 * 163.67926 * 15 2 1 17 17 H 1.09001 * 109.61487 * 55.63431 * 16 15 2 18 18 C 1.53299 * 109.61754 * 295.27698 * 16 15 2 19 19 C 1.52873 * 108.59219 * 165.82451 * 18 16 15 20 20 C 1.52082 * 110.51003 * 54.88741 * 19 18 16 21 21 H 1.09004 * 114.63504 * 193.15352 * 20 19 18 22 22 C 1.52305 * 119.84012 * 49.55799 * 20 19 18 23 23 C 1.52063 * 120.02200 * 338.29971 * 20 19 18 24 24 H 1.08995 * 117.25252 * 216.66086 * 23 20 19 25 25 C 1.52752 * 120.59100 * 5.10581 * 23 20 19 26 26 H 1.08997 * 109.47082 * 65.82235 * 1 2 3 27 27 H 1.08998 * 109.47314 * 305.82352 * 1 2 3 28 28 H 1.09001 * 109.46919 * 185.82161 * 1 2 3 29 29 H 1.09003 * 109.47223 * 43.77201 * 3 2 1 30 30 H 1.09002 * 109.46945 * 163.77023 * 3 2 1 31 31 H 1.09002 * 109.46781 * 182.36249 * 4 3 2 32 32 H 1.08999 * 109.47264 * 302.35922 * 4 3 2 33 33 H 1.09003 * 109.47220 * 299.99834 * 6 5 4 34 34 H 1.08999 * 109.47032 * 60.00100 * 6 5 4 35 35 H 0.97002 * 120.00313 * 180.02562 * 10 9 7 36 36 H 1.09004 * 109.47056 * 283.67613 * 15 2 1 37 37 H 1.08997 * 109.47492 * 43.68044 * 15 2 1 38 38 H 1.08994 * 109.61647 * 285.55542 * 18 16 15 39 39 H 1.08999 * 109.61858 * 46.09446 * 18 16 15 40 40 H 1.09002 * 109.26994 * 175.15215 * 19 18 16 41 41 H 1.08999 * 109.27094 * 294.65987 * 19 18 16 42 42 H 1.09005 * 117.53386 * 357.55101 * 22 20 19 43 43 H 1.08998 * 117.53981 * 142.79906 * 22 20 19 44 44 H 1.08995 * 109.51956 * 218.56754 * 25 23 20 45 45 H 1.09007 * 109.21889 * 98.97592 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.8576 1.9705 -1.4011 5 8 0.4750 2.0401 -1.7555 6 6 0.2345 2.5887 -3.0529 7 6 -1.2484 2.6139 -3.3206 8 1 -1.9380 2.2481 -2.5744 9 6 -1.7244 3.1041 -4.5181 10 7 -0.8845 3.5491 -5.4269 11 14 -3.5624 3.1346 -4.8502 12 1 -4.2866 2.5819 -3.6776 13 1 -3.9995 4.5341 -5.0867 14 1 -3.8624 2.3130 -6.0502 15 6 1.9954 -0.7660 1.1376 16 6 3.4706 -1.0911 0.8947 17 1 4.0231 -0.1695 0.7115 18 6 3.6001 -2.0187 -0.3189 19 6 5.0642 -2.0451 -0.7582 20 6 5.9623 -2.4382 0.4045 21 1 7.0251 -2.2630 0.2370 22 6 5.6290 -3.6693 1.2370 23 6 5.4765 -2.2619 1.8346 24 1 6.2124 -1.9538 2.5773 25 6 4.0482 -1.8011 2.1191 26 1 -0.3633 0.4209 -0.9375 27 1 -0.3634 0.6015 0.8332 28 1 -0.3633 -1.0224 0.1042 29 1 1.4328 1.9765 0.7109 30 1 3.0468 1.3570 0.2872 31 1 2.2863 2.9727 -1.4114 32 1 2.3855 1.3422 -2.1185 33 1 0.6294 3.6037 -3.0971 34 1 0.7287 1.9735 -3.8048 35 1 -1.2194 3.8943 -6.2693 36 1 1.8988 -0.1758 2.0489 37 1 1.4318 -1.6929 1.2435 38 1 3.2818 -3.0248 -0.0462 39 1 2.9804 -1.6442 -1.1336 40 1 5.1845 -2.7672 -1.5658 41 1 5.3507 -1.0557 -1.1147 42 1 4.7174 -4.2132 0.9895 43 1 6.4606 -4.2792 1.5899 44 1 4.0486 -1.1163 2.9671 45 1 3.4323 -2.6681 2.3580 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403850035.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:55 Heat of formation + Delta-G solvation = -55.312189 kcal Electronic energy + Delta-G solvation = -20894.198767 eV Core-core repulsion = 17910.929665 eV Total energy + Delta-G solvation = -2983.269102 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.69913 -39.15300 -37.60374 -34.93861 -34.10896 -31.91103 -30.98864 -28.98613 -27.94097 -25.37961 -24.79642 -24.29928 -22.85378 -22.02101 -21.15236 -19.31102 -18.61225 -17.51399 -17.22880 -16.85419 -16.50671 -16.07982 -15.73828 -15.38476 -15.04133 -14.73410 -14.69834 -14.33070 -13.94734 -13.54517 -13.37949 -13.20738 -13.00115 -12.95111 -12.81224 -12.72835 -12.53103 -12.37041 -12.26555 -12.00856 -11.75566 -11.58329 -11.45540 -11.18567 -11.04574 -10.83208 -10.56703 -10.44870 -10.14096 -9.15113 -8.30714 -6.42561 1.40138 1.41540 1.56086 2.35344 2.86119 3.03222 3.06099 3.25941 3.68461 3.90521 3.94187 4.10102 4.13125 4.16762 4.33747 4.35523 4.40800 4.53079 4.60102 4.61364 4.67477 4.69071 4.79680 4.81232 4.86507 4.89506 4.92490 4.96036 4.97834 5.02292 5.08821 5.21475 5.28105 5.34715 5.42181 5.43501 5.48893 5.56826 5.58773 5.59975 5.98860 6.15651 6.31192 6.57100 6.85859 7.29458 8.81971 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.035576 B = 0.003372 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.865692 B = 8302.095756 C = 8536.832741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.543 5.543 3 C 0.069 3.931 4 C 0.060 3.940 5 O -0.395 6.395 6 C 0.209 3.791 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.004 3.996 10 N -0.932 5.932 11 Si 0.982 3.018 12 H -0.263 1.263 13 H -0.272 1.272 14 H -0.272 1.272 15 C 0.060 3.940 16 C -0.075 4.075 17 H 0.066 0.934 18 C -0.106 4.106 19 C -0.089 4.089 20 C -0.146 4.146 21 H 0.100 0.900 22 C -0.181 4.181 23 C -0.148 4.148 24 H 0.108 0.892 25 C -0.080 4.080 26 H 0.067 0.933 27 H 0.018 0.982 28 H 0.068 0.932 29 H 0.036 0.964 30 H 0.105 0.895 31 H 0.044 0.956 32 H 0.039 0.961 33 H -0.018 1.018 34 H -0.019 1.019 35 H 0.270 0.730 36 H 0.038 0.962 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.091 0.909 43 H 0.100 0.900 44 H 0.072 0.928 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.290 -12.317 15.577 23.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.267 5.267 3 C -0.059 4.059 4 C -0.017 4.017 5 O -0.315 6.315 6 C 0.134 3.866 7 C -0.579 4.579 8 H 0.081 0.919 9 C -0.194 4.194 10 N -0.572 5.572 11 Si 0.805 3.195 12 H -0.187 1.187 13 H -0.198 1.198 14 H -0.198 1.198 15 C -0.068 4.068 16 C -0.094 4.094 17 H 0.085 0.915 18 C -0.144 4.144 19 C -0.126 4.126 20 C -0.164 4.164 21 H 0.119 0.881 22 C -0.218 4.218 23 C -0.166 4.166 24 H 0.126 0.874 25 C -0.118 4.118 26 H 0.085 0.915 27 H 0.037 0.963 28 H 0.087 0.913 29 H 0.054 0.946 30 H 0.123 0.877 31 H 0.062 0.938 32 H 0.057 0.943 33 H -0.001 1.001 34 H -0.001 1.001 35 H 0.079 0.921 36 H 0.056 0.944 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.109 0.891 43 H 0.118 0.882 44 H 0.091 0.909 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.308 -12.541 15.107 23.173 hybrid contribution -0.697 0.788 -0.121 1.060 sum 11.611 -11.752 14.987 22.305 Atomic orbital electron populations 1.22468 0.87063 1.00760 1.01543 1.61864 1.08130 1.13246 1.43434 1.22142 1.00945 0.88645 0.94149 1.22562 0.83922 0.98321 0.96943 1.87839 1.24200 1.83851 1.35610 1.19775 0.96117 0.90696 0.79985 1.21400 0.92110 1.42311 1.02097 0.91935 1.25966 1.04185 0.94164 0.95083 1.70083 1.36852 1.42352 1.07867 0.85148 0.77627 0.78244 0.78457 1.18708 1.19775 1.19778 1.22218 0.96032 0.97667 0.90866 1.21117 0.94093 0.98609 0.95533 0.91542 1.21487 0.95917 0.98932 0.98057 1.20835 0.94220 1.01136 0.96431 1.21850 0.99793 1.02678 0.92058 0.88139 1.23166 1.03507 0.90601 1.04530 1.22241 0.98179 0.99895 0.96286 0.87353 1.21041 0.93549 1.00158 0.97037 0.91461 0.96302 0.91314 0.94592 0.87693 0.93820 0.94283 1.00057 1.00110 0.92143 0.94377 0.90625 0.92371 0.92271 0.91808 0.92154 0.89092 0.88172 0.90880 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 9.16 127.69 1.17 2.14 16 2 N -0.54 -16.12 3.91 -922.46 -3.61 -19.72 16 3 C 0.07 2.08 5.40 86.30 0.47 2.55 16 4 C 0.06 2.30 6.29 71.98 0.45 2.75 16 5 O -0.40 -19.30 7.36 -148.98 -1.10 -20.40 16 6 C 0.21 11.97 5.69 71.24 0.41 12.37 16 7 C -0.54 -32.49 9.43 25.60 0.24 -32.25 16 8 H 0.06 3.70 7.81 -2.91 -0.02 3.68 16 9 C 0.00 0.25 5.46 84.65 0.46 0.71 16 10 N -0.93 -56.82 13.29 21.44 0.28 -56.53 16 11 Si 0.98 44.81 29.54 68.60 2.03 46.84 16 12 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 13 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 14 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 15 C 0.06 1.34 4.37 86.30 0.38 1.71 16 16 C -0.07 -1.48 2.16 -10.74 -0.02 -1.50 16 17 H 0.07 1.41 6.37 -2.39 -0.02 1.40 16 18 C -0.11 -2.31 5.02 30.65 0.15 -2.15 16 19 C -0.09 -1.75 5.93 30.25 0.18 -1.57 16 20 C -0.15 -2.44 6.00 -11.64 -0.07 -2.51 16 21 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 22 C -0.18 -2.71 9.67 30.59 0.30 -2.41 16 23 C -0.15 -2.27 6.18 -10.96 -0.07 -2.34 16 24 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 25 C -0.08 -1.27 5.14 30.47 0.16 -1.11 16 26 H 0.07 2.81 5.62 -2.39 -0.01 2.80 16 27 H 0.02 0.59 7.96 -2.39 -0.02 0.57 16 28 H 0.07 1.97 7.86 -2.39 -0.02 1.95 16 29 H 0.04 1.11 7.87 -2.39 -0.02 1.09 16 30 H 0.11 2.56 6.22 -2.39 -0.01 2.55 16 31 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 33 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 34 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 35 H 0.27 15.20 8.31 -92.71 -0.77 14.42 16 36 H 0.04 0.80 8.05 -2.38 -0.02 0.78 16 37 H 0.08 1.62 7.80 -2.39 -0.02 1.60 16 38 H 0.06 1.20 7.11 -2.39 -0.02 1.19 16 39 H 0.06 1.61 7.44 -2.39 -0.02 1.59 16 40 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.09 1.43 7.26 -2.38 -0.02 1.42 16 43 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.07 1.05 8.06 -2.38 -0.02 1.03 16 Total: -1.00 -64.96 346.51 2.73 -62.23 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 0.92 Total: 11.19 kcal Atomic # 6 Polarization: -27.81 SS G_CDS: 4.20 Total: -23.61 kcal Atomic # 7 Polarization: -72.93 SS G_CDS: -3.32 Total: -76.25 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -1.10 Total: -20.40 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -64.96 2.73 -62.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403850035.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.917 kcal (2) G-P(sol) polarization free energy of solvation -64.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds