Wall clock time and date at job start Mon Mar 30 2020 08:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00125 * 2 1 4 4 H 1.09002 * 110.66970 * 333.24365 * 3 2 1 5 5 C 1.54215 * 111.04471 * 96.14421 * 3 2 1 6 6 C 1.54204 * 104.58680 * 155.86748 * 5 3 2 7 7 H 1.09002 * 111.38320 * 98.90586 * 6 5 3 8 8 C 1.54198 * 109.48101 * 222.53642 * 6 5 3 9 9 C 1.55521 * 103.96363 * 139.30405 * 8 6 5 10 10 H 1.09001 * 111.32863 * 79.46016 * 9 8 6 11 11 N 1.46899 * 110.64052 * 202.96743 * 9 8 6 12 12 C 1.46903 * 111.00069 * 267.88106 * 11 9 8 13 13 C 1.53001 * 109.46888 * 179.97438 * 12 11 9 14 14 C 1.53007 * 109.46723 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.46872 * 180.02562 * 14 13 12 16 16 H 1.08005 * 120.00022 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00104 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99566 * 359.97438 * 17 15 14 19 19 Si 1.86791 * 120.00117 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47604 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47269 * 119.99748 * 19 17 15 22 22 H 1.48509 * 109.47140 * 239.99890 * 19 17 15 23 23 C 1.54865 * 102.43550 * 321.05890 * 9 8 6 24 24 C 1.54194 * 104.28063 * 38.59499 * 23 9 8 25 25 H 1.09003 * 111.38006 * 97.97922 * 24 23 9 26 26 C 1.54193 * 109.48371 * 221.60974 * 24 23 9 27 27 H 1.09000 * 109.47176 * 299.99506 * 1 2 3 28 28 H 1.08998 * 109.47295 * 59.99783 * 1 2 3 29 29 H 1.08997 * 109.46854 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.53560 * 37.46028 * 5 3 2 31 31 H 1.08997 * 111.10792 * 275.06399 * 5 3 2 32 32 H 1.08995 * 110.46981 * 257.09441 * 8 6 5 33 33 H 1.08997 * 110.47144 * 19.69104 * 8 6 5 34 34 H 1.00906 * 110.99387 * 31.82980 * 11 9 8 35 35 H 1.08993 * 109.47125 * 299.99723 * 12 11 9 36 36 H 1.09008 * 109.46929 * 59.99729 * 12 11 9 37 37 H 1.09000 * 109.47452 * 299.99656 * 13 12 11 38 38 H 1.08995 * 109.47151 * 60.00593 * 13 12 11 39 39 H 1.09000 * 109.46767 * 299.99942 * 14 13 12 40 40 H 1.08995 * 109.46932 * 60.00326 * 14 13 12 41 41 H 0.96999 * 119.99895 * 180.02562 * 18 17 15 42 42 H 1.09000 * 110.46667 * 279.89901 * 23 9 8 43 43 H 1.08998 * 110.46929 * 157.29444 * 23 9 8 44 44 H 1.09000 * 110.47264 * 257.09629 * 26 24 23 45 45 H 1.09007 * 110.46725 * 19.56398 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3348 2.0274 -0.4591 5 6 2.3762 1.7487 1.4310 6 6 3.4918 2.7960 1.2398 7 1 3.0983 3.8109 1.2979 8 6 4.6010 2.5625 2.2852 9 6 5.9189 2.7863 1.4903 10 1 6.1356 3.8481 1.3729 11 7 7.0404 2.0973 2.1426 12 6 7.7312 2.9895 3.0832 13 6 8.8898 2.2379 3.7416 14 6 9.6089 3.1671 4.7218 15 6 10.7505 2.4270 5.3699 16 1 10.9436 1.3968 5.1092 17 6 11.5479 3.0646 6.2965 18 7 11.3124 4.3189 6.6144 19 14 12.9633 2.1476 7.0994 20 1 13.0158 0.7598 6.5736 21 1 14.2399 2.8418 6.7934 22 1 12.7593 2.1118 8.5699 23 6 5.5972 2.1372 0.1216 24 6 4.1253 2.5140 -0.1414 25 1 4.0482 3.3797 -0.7993 26 6 3.3791 1.2969 -0.7241 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 2.7493 0.8929 1.9935 31 1 1.5185 2.1932 1.9357 32 1 4.5259 3.2932 3.0904 33 1 4.5434 1.5491 2.6823 34 1 6.7284 1.2562 2.6047 35 1 8.1180 3.8550 2.5455 36 1 7.0311 3.3212 3.8501 37 1 8.5026 1.3725 4.2795 38 1 9.5899 1.9060 2.9751 39 1 9.9960 4.0327 4.1843 40 1 8.9086 3.4987 5.4883 41 1 11.8735 4.7677 7.2660 42 1 5.7093 1.0544 0.1775 43 1 6.2408 2.5485 -0.6560 44 1 3.2424 1.4124 -1.7993 45 1 3.9219 0.3770 -0.5064 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424273052.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:38:04 Heat of formation + Delta-G solvation = -80.318283 kcal Electronic energy + Delta-G solvation = -20227.570886 eV Core-core repulsion = 17243.217439 eV Total energy + Delta-G solvation = -2984.353447 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.18237 -37.86372 -35.90886 -33.67841 -32.11598 -30.67474 -30.17989 -27.34210 -26.26675 -25.56233 -24.63455 -22.28873 -21.33818 -20.53310 -19.74366 -19.04875 -17.04583 -16.62646 -16.20995 -15.30687 -15.26947 -15.09003 -14.82867 -14.34479 -14.18533 -13.87763 -13.26257 -12.80313 -12.45157 -12.24595 -12.21394 -11.96986 -11.88634 -11.77299 -11.32394 -11.18567 -11.06208 -10.94870 -10.84840 -10.81844 -10.65662 -10.53639 -10.46834 -10.23180 -9.80493 -9.65031 -9.28510 -8.99892 -8.31599 -8.03077 -5.96665 -3.98424 3.33493 3.40710 3.43736 3.45618 4.12489 4.26492 4.40658 4.50522 4.67138 4.86149 4.90495 4.99660 5.04394 5.07360 5.10374 5.27408 5.32035 5.34786 5.39189 5.41173 5.51008 5.58859 5.66365 5.67252 5.82203 5.87025 5.88333 5.93120 5.98866 6.02956 6.19449 6.23195 6.30255 6.37359 6.77607 6.84512 6.93771 7.18331 7.44046 7.70377 7.73082 7.87931 8.04282 8.47825 9.09134 9.65435 11.14877 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.044590 B = 0.002615 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.789934 B =10703.426411 C =10813.331639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.080 3.920 4 H 0.065 0.935 5 C -0.139 4.139 6 C -0.087 4.087 7 H 0.077 0.923 8 C -0.147 4.147 9 C 0.083 3.917 10 H 0.082 0.918 11 N -0.684 5.684 12 C 0.060 3.940 13 C -0.107 4.107 14 C 0.021 3.979 15 C -0.517 4.517 16 H 0.056 0.944 17 C 0.054 3.946 18 N -0.897 5.897 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.285 1.285 23 C -0.106 4.106 24 C -0.093 4.093 25 H 0.078 0.922 26 C -0.113 4.113 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.338 0.662 35 H 0.065 0.935 36 H 0.023 0.977 37 H 0.044 0.956 38 H 0.055 0.945 39 H 0.016 0.984 40 H 0.013 0.987 41 H 0.259 0.741 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.075 -4.161 -14.790 26.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.300 6.300 3 C 0.022 3.978 4 H 0.083 0.917 5 C -0.177 4.177 6 C -0.107 4.107 7 H 0.095 0.905 8 C -0.186 4.186 9 C -0.028 4.028 10 H 0.100 0.900 11 N -0.313 5.313 12 C -0.069 4.069 13 C -0.145 4.145 14 C -0.016 4.016 15 C -0.555 4.555 16 H 0.074 0.926 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.720 3.280 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.144 4.144 24 C -0.112 4.112 25 H 0.097 0.903 26 C -0.151 4.151 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.156 0.844 35 H 0.084 0.916 36 H 0.042 0.958 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.034 0.966 40 H 0.032 0.968 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.431 -4.068 -15.189 26.581 hybrid contribution -0.164 -0.049 1.346 1.357 sum -21.596 -4.116 -13.842 25.979 Atomic orbital electron populations 1.22771 0.81347 1.02649 0.99806 1.87922 1.19418 1.27785 1.94924 1.23096 0.94804 0.84134 0.95718 0.91694 1.22835 0.98540 0.99092 0.97226 1.22176 0.94977 0.98553 0.94951 0.90483 1.23323 0.95722 1.01807 0.97794 1.22728 0.88217 0.98200 0.93648 0.90013 1.60554 1.27017 1.08332 1.35418 1.22144 0.95903 0.95863 0.92980 1.21626 0.95506 0.98852 0.98559 1.19072 0.94743 0.94514 0.93285 1.21308 1.13266 0.98257 1.22687 0.92618 1.25041 0.97792 0.94928 0.96880 1.69983 1.39460 1.10634 1.33597 0.86537 0.82333 0.80030 0.79114 1.19721 1.21027 1.21078 1.22453 0.93752 1.01274 0.96891 1.22297 0.95496 0.97340 0.96039 0.90310 1.22535 0.94313 0.99027 0.99211 0.94151 0.94171 0.89741 0.90440 0.91877 0.91931 0.91034 0.84358 0.91609 0.95840 0.93718 0.92589 0.96605 0.96847 0.93130 0.90905 0.91529 0.91448 0.90127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.85 101.05 1.10 1.31 16 2 O -0.38 -3.84 10.50 -35.23 -0.37 -4.21 16 3 C 0.08 0.71 3.35 -25.12 -0.08 0.62 16 4 H 0.07 0.50 7.82 -51.93 -0.41 0.09 16 5 C -0.14 -1.25 6.07 -25.47 -0.15 -1.41 16 6 C -0.09 -0.81 3.70 -88.54 -0.33 -1.13 16 7 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 8 C -0.15 -1.61 5.95 -24.76 -0.15 -1.76 16 9 C 0.08 1.02 3.26 -65.39 -0.21 0.80 16 10 H 0.08 1.05 7.82 -51.93 -0.41 0.64 16 11 N -0.68 -10.14 6.39 -104.28 -0.67 -10.80 16 12 C 0.06 1.05 5.55 -3.82 -0.02 1.03 16 13 C -0.11 -2.28 5.41 -26.73 -0.14 -2.43 16 14 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 15 C -0.52 -14.99 9.11 -34.44 -0.31 -15.31 16 16 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 17 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 19 Si 0.89 22.05 29.54 -169.99 -5.02 17.02 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 C -0.11 -1.12 6.05 -25.12 -0.15 -1.28 16 24 C -0.09 -0.83 3.70 -88.55 -0.33 -1.16 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 26 C -0.11 -1.00 6.11 -25.13 -0.15 -1.16 16 27 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.04 0.23 8.11 -51.93 -0.42 -0.19 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.79 7.26 -51.93 -0.38 0.41 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.80 6.95 -51.93 -0.36 0.44 16 34 H 0.34 4.79 8.23 -39.29 -0.32 4.47 16 35 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 36 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 37 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.07 0.82 7.26 -51.93 -0.38 0.44 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.08 0.80 7.26 -51.93 -0.38 0.42 16 LS Contribution 351.27 15.07 5.29 5.29 Total: -1.00 -30.74 351.27 -9.71 -40.45 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -8.51 Total: -1.12 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: -1.18 Total: -19.94 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.07 Total: -37.50 kcal Atomic # 8 Polarization: -3.84 SS G_CDS: -0.37 Total: -4.21 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.74 -9.71 -40.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424273052.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.866 kcal (2) G-P(sol) polarization free energy of solvation -30.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds