Wall clock time and date at job start Mon Mar 30 2020 08:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00125 * 2 1 4 4 H 1.09002 * 110.66970 * 333.24365 * 3 2 1 5 5 C 1.54215 * 111.04471 * 96.14421 * 3 2 1 6 6 C 1.54204 * 104.58680 * 155.86748 * 5 3 2 7 7 H 1.09002 * 111.38320 * 98.90586 * 6 5 3 8 8 C 1.54198 * 109.48101 * 222.53642 * 6 5 3 9 9 C 1.55521 * 103.96363 * 139.30405 * 8 6 5 10 10 H 1.09001 * 111.32863 * 79.46016 * 9 8 6 11 11 N 1.46899 * 110.64052 * 202.96743 * 9 8 6 12 12 C 1.46903 * 111.00069 * 267.88106 * 11 9 8 13 13 C 1.53001 * 109.46888 * 179.97438 * 12 11 9 14 14 C 1.53007 * 109.46723 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.46872 * 180.02562 * 14 13 12 16 16 H 1.08005 * 120.00022 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00104 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99566 * 359.97438 * 17 15 14 19 19 Si 1.86791 * 120.00117 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47604 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47269 * 119.99748 * 19 17 15 22 22 H 1.48509 * 109.47140 * 239.99890 * 19 17 15 23 23 C 1.54865 * 102.43550 * 321.05890 * 9 8 6 24 24 C 1.54194 * 104.28063 * 38.59499 * 23 9 8 25 25 H 1.09003 * 111.38006 * 97.97922 * 24 23 9 26 26 C 1.54193 * 109.48371 * 221.60974 * 24 23 9 27 27 H 1.09000 * 109.47176 * 299.99506 * 1 2 3 28 28 H 1.08998 * 109.47295 * 59.99783 * 1 2 3 29 29 H 1.08997 * 109.46854 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.53560 * 37.46028 * 5 3 2 31 31 H 1.08997 * 111.10792 * 275.06399 * 5 3 2 32 32 H 1.08995 * 110.46981 * 257.09441 * 8 6 5 33 33 H 1.08997 * 110.47144 * 19.69104 * 8 6 5 34 34 H 1.00906 * 110.99387 * 31.82980 * 11 9 8 35 35 H 1.08993 * 109.47125 * 299.99723 * 12 11 9 36 36 H 1.09008 * 109.46929 * 59.99729 * 12 11 9 37 37 H 1.09000 * 109.47452 * 299.99656 * 13 12 11 38 38 H 1.08995 * 109.47151 * 60.00593 * 13 12 11 39 39 H 1.09000 * 109.46767 * 299.99942 * 14 13 12 40 40 H 1.08995 * 109.46932 * 60.00326 * 14 13 12 41 41 H 0.96999 * 119.99895 * 180.02562 * 18 17 15 42 42 H 1.09000 * 110.46667 * 279.89901 * 23 9 8 43 43 H 1.08998 * 110.46929 * 157.29444 * 23 9 8 44 44 H 1.09000 * 110.47264 * 257.09629 * 26 24 23 45 45 H 1.09007 * 110.46725 * 19.56398 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3348 2.0274 -0.4591 5 6 2.3762 1.7487 1.4310 6 6 3.4918 2.7960 1.2398 7 1 3.0983 3.8109 1.2979 8 6 4.6010 2.5625 2.2852 9 6 5.9189 2.7863 1.4903 10 1 6.1356 3.8481 1.3729 11 7 7.0404 2.0973 2.1426 12 6 7.7312 2.9895 3.0832 13 6 8.8898 2.2379 3.7416 14 6 9.6089 3.1671 4.7218 15 6 10.7505 2.4270 5.3699 16 1 10.9436 1.3968 5.1092 17 6 11.5479 3.0646 6.2965 18 7 11.3124 4.3189 6.6144 19 14 12.9633 2.1476 7.0994 20 1 13.0158 0.7598 6.5736 21 1 14.2399 2.8418 6.7934 22 1 12.7593 2.1118 8.5699 23 6 5.5972 2.1372 0.1216 24 6 4.1253 2.5140 -0.1414 25 1 4.0482 3.3797 -0.7993 26 6 3.3791 1.2969 -0.7241 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 2.7493 0.8929 1.9935 31 1 1.5185 2.1932 1.9357 32 1 4.5259 3.2932 3.0904 33 1 4.5434 1.5491 2.6823 34 1 6.7284 1.2562 2.6047 35 1 8.1180 3.8550 2.5455 36 1 7.0311 3.3212 3.8501 37 1 8.5026 1.3725 4.2795 38 1 9.5899 1.9060 2.9751 39 1 9.9960 4.0327 4.1843 40 1 8.9086 3.4987 5.4883 41 1 11.8735 4.7677 7.2660 42 1 5.7093 1.0544 0.1775 43 1 6.2408 2.5485 -0.6560 44 1 3.2424 1.4124 -1.7993 45 1 3.9219 0.3770 -0.5064 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424273052.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:38:03 Heat of formation + Delta-G solvation = -98.771756 kcal Electronic energy + Delta-G solvation = -20228.371089 eV Core-core repulsion = 17243.217439 eV Total energy + Delta-G solvation = -2985.153650 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.96556 -38.67457 -37.17926 -35.46357 -33.69555 -31.63822 -31.42973 -28.44972 -27.45086 -26.40852 -25.78571 -24.01054 -22.28478 -21.84310 -20.97430 -19.80908 -18.50652 -17.72082 -17.32111 -16.56935 -16.46091 -16.00248 -15.88369 -15.78532 -15.44514 -14.80091 -14.43109 -14.11910 -13.86657 -13.62924 -13.31424 -13.10129 -13.01556 -12.83150 -12.51105 -12.46855 -12.39136 -12.37095 -12.09541 -11.81672 -11.72180 -11.61200 -11.53599 -11.43201 -11.35739 -11.19542 -10.91295 -10.56467 -10.45212 -9.24188 -8.20839 -6.31822 1.39643 1.40026 1.53831 2.40698 2.81572 3.12119 3.21087 3.43289 3.57138 3.90892 4.08312 4.13774 4.18223 4.27193 4.34860 4.41078 4.46301 4.50886 4.55104 4.60405 4.63672 4.71658 4.73718 4.80556 4.81546 4.88872 4.92005 4.99665 5.05833 5.06396 5.11047 5.22336 5.22456 5.27526 5.35372 5.36403 5.52379 5.54877 5.74798 5.85426 6.14728 6.28309 6.33732 6.51390 6.85228 7.37385 8.91362 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.044590 B = 0.002615 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.789934 B =10703.426411 C =10813.331639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.080 3.920 4 H 0.081 0.919 5 C -0.136 4.136 6 C -0.083 4.083 7 H 0.088 0.912 8 C -0.143 4.143 9 C 0.079 3.921 10 H 0.078 0.922 11 N -0.685 5.685 12 C 0.074 3.926 13 C -0.093 4.093 14 C 0.025 3.975 15 C -0.542 4.542 16 H 0.059 0.941 17 C -0.003 4.003 18 N -0.934 5.934 19 Si 0.967 3.033 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.277 1.277 23 C -0.101 4.101 24 C -0.085 4.085 25 H 0.094 0.906 26 C -0.112 4.112 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.092 0.908 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.343 0.657 35 H 0.060 0.940 36 H 0.021 0.979 37 H 0.049 0.951 38 H 0.052 0.948 39 H -0.009 1.009 40 H -0.010 1.010 41 H 0.264 0.736 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.871 -4.805 -15.553 28.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.326 6.326 3 C 0.023 3.977 4 H 0.099 0.901 5 C -0.174 4.174 6 C -0.102 4.102 7 H 0.107 0.893 8 C -0.183 4.183 9 C -0.032 4.032 10 H 0.096 0.904 11 N -0.315 5.315 12 C -0.055 4.055 13 C -0.131 4.131 14 C -0.013 4.013 15 C -0.580 4.580 16 H 0.077 0.923 17 C -0.201 4.201 18 N -0.574 5.574 19 Si 0.791 3.209 20 H -0.186 1.186 21 H -0.203 1.203 22 H -0.203 1.203 23 C -0.139 4.139 24 C -0.104 4.104 25 H 0.112 0.888 26 C -0.150 4.150 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.111 0.889 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.161 0.839 35 H 0.079 0.921 36 H 0.040 0.960 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.010 0.990 40 H 0.009 0.991 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.097 0.903 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -22.249 -4.722 -15.967 27.789 hybrid contribution 0.046 0.159 1.576 1.585 sum -22.203 -4.563 -14.391 26.849 Atomic orbital electron populations 1.22945 0.79887 1.03601 1.00706 1.87889 1.21161 1.28519 1.95040 1.23135 0.94991 0.84193 0.95391 0.90071 1.22793 0.98677 0.98422 0.97524 1.22164 0.94421 0.99281 0.94349 0.89319 1.23255 0.95697 1.01338 0.97974 1.22816 0.87867 0.97894 0.94576 0.90418 1.60500 1.28453 1.08164 1.34392 1.21830 0.94865 0.95569 0.93225 1.21382 0.96262 0.98070 0.97380 1.18975 0.94253 0.94553 0.93480 1.21730 1.14286 0.98680 1.23317 0.92302 1.26016 1.00770 0.95831 0.97445 1.70108 1.40797 1.12300 1.34240 0.85369 0.78471 0.78936 0.78091 1.18647 1.20262 1.20252 1.22403 0.95116 1.00660 0.95702 1.22265 0.94021 0.97982 0.96162 0.88763 1.22509 0.94292 0.98169 0.99985 0.93566 0.92900 0.88908 0.92025 0.90932 0.92584 0.91473 0.83879 0.92138 0.96033 0.93263 0.92969 0.99034 0.99112 0.92752 0.91571 0.91457 0.90269 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.85 113.37 1.23 1.52 16 2 O -0.41 -7.61 10.50 -148.98 -1.56 -9.17 16 3 C 0.08 1.26 3.35 31.64 0.11 1.37 16 4 H 0.08 1.01 7.82 -2.39 -0.02 0.99 16 5 C -0.14 -2.25 6.07 31.41 0.19 -2.06 16 6 C -0.08 -1.39 3.70 -9.45 -0.03 -1.42 16 7 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 8 C -0.14 -3.02 5.95 31.87 0.19 -2.83 16 9 C 0.08 1.87 3.26 46.42 0.15 2.02 16 10 H 0.08 1.93 7.82 -2.39 -0.02 1.91 16 11 N -0.69 -20.02 6.39 -483.82 -3.09 -23.11 16 12 C 0.07 2.63 5.55 86.30 0.48 3.11 16 13 C -0.09 -3.99 5.41 30.60 0.17 -3.82 16 14 C 0.03 1.36 4.97 29.85 0.15 1.51 16 15 C -0.54 -31.82 9.11 25.60 0.23 -31.59 16 16 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 17 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 18 N -0.93 -57.92 13.29 21.45 0.28 -57.64 16 19 Si 0.97 45.18 29.54 68.60 2.03 47.20 16 20 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 23 C -0.10 -2.03 6.05 31.64 0.19 -1.83 16 24 C -0.09 -1.36 3.70 -9.45 -0.03 -1.40 16 25 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 26 C -0.11 -1.79 6.11 31.63 0.19 -1.59 16 27 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.05 0.49 8.11 -2.39 -0.02 0.47 16 29 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 1.22 7.26 -2.39 -0.02 1.20 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.07 1.47 6.95 -2.39 -0.02 1.46 16 34 H 0.34 9.53 8.23 -89.69 -0.74 8.80 16 35 H 0.06 2.21 8.08 -2.39 -0.02 2.19 16 36 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 37 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 39 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 40 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 41 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 42 H 0.07 1.43 7.26 -2.39 -0.02 1.41 16 43 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.07 1.25 7.26 -2.38 -0.02 1.24 16 Total: -1.00 -65.76 351.27 1.52 -64.24 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.19 Total: 15.21 kcal Atomic # 6 Polarization: -40.40 SS G_CDS: 3.67 Total: -36.73 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: -2.81 Total: -80.75 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: -1.56 Total: -9.17 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -65.76 1.52 -64.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424273052.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.531 kcal (2) G-P(sol) polarization free energy of solvation -65.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds