Wall clock time and date at job start Mon Mar 30 2020 08:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99698 * 2 1 4 4 C 1.53002 * 109.47166 * 149.99816 * 3 2 1 5 5 C 1.52999 * 109.47016 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47137 * 299.99551 * 5 4 3 7 7 N 1.46896 * 109.47350 * 180.02562 * 6 5 4 8 8 C 1.46898 * 111.00036 * 155.00244 * 7 6 5 9 9 H 1.08998 * 110.05566 * 325.04179 * 8 7 6 10 10 C 1.53876 * 110.03091 * 86.45840 * 8 7 6 11 11 C 1.54261 * 106.59990 * 119.28539 * 10 8 7 12 12 C 1.54888 * 104.19672 * 23.60631 * 11 10 8 13 13 H 1.09005 * 110.75648 * 80.37263 * 12 11 10 14 14 C 1.50703 * 110.75894 * 203.55764 * 12 11 10 15 15 H 1.08002 * 119.99768 * 118.54781 * 14 12 11 16 16 C 1.37878 * 119.99930 * 298.55149 * 14 12 11 17 17 N 1.31510 * 119.99586 * 180.02562 * 16 14 12 18 18 Si 1.86800 * 120.00019 * 359.97438 * 16 14 12 19 19 H 1.48492 * 109.46953 * 90.00277 * 18 16 14 20 20 H 1.48503 * 109.46931 * 210.00234 * 18 16 14 21 21 H 1.48501 * 109.47168 * 330.00047 * 18 16 14 22 22 C 1.54267 * 110.03136 * 203.62381 * 8 7 6 23 23 C 1.53004 * 109.46533 * 60.00586 * 6 5 4 24 24 C 1.52998 * 109.47478 * 269.99855 * 3 2 1 25 25 H 1.08994 * 109.47494 * 299.99898 * 1 2 3 26 26 H 1.09009 * 109.46945 * 60.00212 * 1 2 3 27 27 H 1.09000 * 109.46647 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46993 * 30.00197 * 3 2 1 29 29 H 1.08995 * 109.46927 * 60.00140 * 4 3 2 30 30 H 1.09003 * 109.47061 * 300.00465 * 4 3 2 31 31 H 1.09007 * 109.46591 * 180.02562 * 5 4 3 32 32 H 1.08995 * 109.47431 * 60.00114 * 5 4 3 33 33 H 1.08997 * 109.47167 * 300.01049 * 6 5 4 34 34 H 1.00909 * 110.99709 * 31.04921 * 7 6 5 35 35 H 1.08998 * 110.02768 * 238.57135 * 10 8 7 36 36 H 1.08999 * 110.02894 * 359.94820 * 10 8 7 37 37 H 1.09000 * 110.48928 * 142.28640 * 11 10 8 38 38 H 1.08999 * 110.48469 * 264.93049 * 11 10 8 39 39 H 0.97002 * 119.99891 * 179.97438 * 17 16 14 40 40 H 1.09004 * 110.48597 * 335.78428 * 22 8 7 41 41 H 1.08994 * 110.48679 * 98.42954 * 22 8 7 42 42 H 1.08995 * 109.47280 * 59.99898 * 23 6 5 43 43 H 1.09005 * 109.46883 * 180.02562 * 23 6 5 44 44 H 1.08995 * 109.47124 * 300.00172 * 24 3 2 45 45 H 1.09011 * 109.46537 * 60.00028 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3589 1.2634 0.7213 5 6 3.9808 2.6613 0.7218 6 6 4.1882 3.1278 -0.7205 7 7 4.7859 4.4696 -0.7201 8 6 5.5294 4.7152 -1.9629 9 1 6.0017 3.7940 -2.3042 10 6 4.5800 5.2539 -3.0474 11 6 5.1052 6.6506 -3.4387 12 6 6.6047 6.6145 -3.0525 13 1 7.1885 6.1028 -3.8177 14 6 7.1314 8.0080 -2.8249 15 1 7.5180 8.2876 -1.8560 16 6 7.1196 8.9260 -3.8536 17 7 7.5797 10.1419 -3.6550 18 14 6.4514 8.4422 -5.5295 19 1 4.9963 8.7331 -5.5851 20 1 7.1520 9.2180 -6.5844 21 1 6.6750 6.9910 -5.7515 22 6 6.5984 5.8034 -1.7330 23 6 2.8395 3.1699 -1.4417 24 6 2.2177 1.7715 -1.4425 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3632 -1.0277 -0.0005 28 1 1.3449 1.9994 0.5139 29 1 4.0241 0.5695 0.2075 30 1 3.2111 0.9314 1.7490 31 1 4.9418 2.6311 1.2353 32 1 3.3154 3.3548 1.2359 33 1 4.8536 2.4341 -1.2346 34 1 5.3769 4.6019 0.0871 35 1 4.5915 4.5942 -3.9150 36 1 3.5674 5.3323 -2.6517 37 1 4.9910 6.8148 -4.5102 38 1 4.5848 7.4254 -2.8756 39 1 7.5717 10.7877 -4.3788 40 1 6.3192 6.4413 -0.8943 41 1 7.5740 5.3492 -1.5597 42 1 2.1741 3.8634 -0.9277 43 1 2.9873 3.5018 -2.4695 44 1 2.8829 1.0776 -1.9563 45 1 1.2567 1.8015 -1.9563 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449445141.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:24 Heat of formation + Delta-G solvation = -69.780835 kcal Electronic energy + Delta-G solvation = -21123.026699 eV Core-core repulsion = 18139.130190 eV Total energy + Delta-G solvation = -2983.896509 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.65031 -38.09393 -36.48552 -33.49129 -31.98214 -31.01679 -28.98244 -28.35428 -26.91976 -25.72601 -23.60795 -22.59408 -21.66053 -20.14380 -19.32952 -19.10772 -16.84613 -16.67201 -16.03683 -15.48844 -15.21398 -15.12872 -14.96688 -14.04668 -14.01230 -13.66638 -13.23825 -12.82582 -12.61549 -12.44034 -12.35874 -12.12976 -12.04477 -11.68264 -11.45747 -11.23956 -11.03336 -10.87589 -10.60861 -10.55572 -10.45084 -10.27342 -9.98787 -9.76659 -9.66938 -9.53815 -9.30192 -8.93747 -8.48492 -8.16221 -6.02125 -4.00112 3.33284 3.41537 3.43956 3.47365 4.30277 4.47197 4.53343 4.55087 4.92523 4.95836 5.06135 5.12354 5.16898 5.20625 5.27063 5.33793 5.35247 5.38071 5.44939 5.52338 5.57013 5.63875 5.77854 5.82203 5.92217 6.02460 6.04994 6.11534 6.18450 6.32031 6.35860 6.42480 6.57065 6.69321 6.74123 6.88470 6.97336 6.99263 7.16661 7.47303 7.63655 7.69132 7.84627 8.58879 9.01865 9.61533 11.11455 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.042426 B = 0.003682 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.818092 B = 7602.386237 C = 8037.314218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.389 6.389 3 C 0.089 3.911 4 C -0.111 4.111 5 C -0.118 4.118 6 C 0.086 3.914 7 N -0.679 5.679 8 C 0.083 3.917 9 H 0.036 0.964 10 C -0.114 4.114 11 C -0.127 4.127 12 C 0.015 3.985 13 H 0.029 0.971 14 C -0.507 4.507 15 H 0.072 0.928 16 C 0.069 3.931 17 N -0.905 5.905 18 Si 0.884 3.116 19 H -0.278 1.278 20 H -0.297 1.297 21 H -0.266 1.266 22 C -0.108 4.108 23 C -0.109 4.109 24 C -0.140 4.140 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.042 0.958 34 H 0.340 0.660 35 H 0.045 0.955 36 H 0.068 0.932 37 H 0.041 0.959 38 H 0.067 0.933 39 H 0.262 0.738 40 H 0.071 0.929 41 H 0.048 0.952 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.257 -18.957 7.173 23.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C 0.031 3.969 4 C -0.150 4.150 5 C -0.156 4.156 6 C -0.024 4.024 7 N -0.310 5.310 8 C -0.026 4.026 9 H 0.054 0.946 10 C -0.153 4.153 11 C -0.165 4.165 12 C -0.004 4.004 13 H 0.047 0.953 14 C -0.545 4.545 15 H 0.091 0.909 16 C -0.132 4.132 17 N -0.543 5.543 18 Si 0.714 3.286 19 H -0.205 1.205 20 H -0.224 1.224 21 H -0.191 1.191 22 C -0.146 4.146 23 C -0.147 4.147 24 C -0.178 4.178 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.101 0.899 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.060 0.940 34 H 0.159 0.841 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.675 -18.636 6.871 23.561 hybrid contribution 0.144 -0.440 -0.912 1.023 sum -12.530 -19.076 5.959 23.588 Atomic orbital electron populations 1.22762 0.81354 1.02482 0.99942 1.87894 1.19437 1.28329 1.95119 1.22212 0.94854 0.83988 0.95823 1.21528 0.95321 0.97503 1.00607 1.21693 1.01251 0.95871 0.96809 1.21593 0.95925 0.89778 0.95088 1.60656 1.38879 1.26563 1.04901 1.22338 0.93432 0.97287 0.89576 0.94633 1.22298 0.99187 0.97492 0.96281 1.22759 0.99697 0.95211 0.98839 1.20022 0.91661 0.96096 0.92616 0.95330 1.21012 1.40476 0.93859 0.99125 0.90949 1.24995 0.94856 0.94777 0.98563 1.69908 1.47161 1.04424 1.32848 0.86874 0.78933 0.78629 0.84212 1.20468 1.22423 1.19124 1.22473 0.95393 0.95811 1.00883 1.21630 0.96109 0.95241 1.01727 1.22051 1.01287 0.97750 0.96725 0.94141 0.94088 0.89863 0.92111 0.91203 0.91320 0.91436 0.90899 0.94036 0.84131 0.93644 0.91383 0.94074 0.91448 0.92790 0.91031 0.93305 0.91318 0.90866 0.91354 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.82 101.05 1.09 1.33 16 2 O -0.39 -4.11 10.35 -35.23 -0.36 -4.47 16 3 C 0.09 0.87 2.61 -26.73 -0.07 0.80 16 4 C -0.11 -1.05 5.57 -26.73 -0.15 -1.20 16 5 C -0.12 -1.15 5.19 -26.73 -0.14 -1.29 16 6 C 0.09 1.02 2.49 -67.71 -0.17 0.85 16 7 N -0.68 -9.53 6.02 -98.57 -0.59 -10.12 16 8 C 0.08 1.37 3.24 -66.59 -0.22 1.16 16 9 H 0.04 0.57 7.46 -51.93 -0.39 0.19 16 10 C -0.11 -2.02 5.25 -25.61 -0.13 -2.16 16 11 C -0.13 -2.76 5.08 -25.08 -0.13 -2.89 16 12 C 0.02 0.36 2.29 -89.78 -0.21 0.15 16 13 H 0.03 0.69 7.37 -51.93 -0.38 0.31 16 14 C -0.51 -14.31 9.13 -34.44 -0.31 -14.62 16 15 H 0.07 2.21 8.03 -52.49 -0.42 1.78 16 16 C 0.07 2.01 5.46 -17.82 -0.10 1.92 16 17 N -0.90 -28.01 13.96 55.43 0.77 -27.23 16 18 Si 0.88 22.21 24.46 -169.99 -4.16 18.06 16 19 H -0.28 -6.84 7.10 56.52 0.40 -6.44 16 20 H -0.30 -7.48 7.11 56.52 0.40 -7.07 16 21 H -0.27 -6.42 6.48 56.52 0.37 -6.05 16 22 C -0.11 -2.10 5.68 -25.07 -0.14 -2.24 16 23 C -0.11 -1.26 4.80 -26.71 -0.13 -1.38 16 24 C -0.14 -1.43 5.54 -26.71 -0.15 -1.58 16 25 H 0.04 0.27 8.08 -51.93 -0.42 -0.15 16 26 H 0.04 0.29 7.87 -51.92 -0.41 -0.12 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.56 7.79 -51.93 -0.40 0.16 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.62 8.12 -51.93 -0.42 0.19 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.04 0.52 7.45 -51.93 -0.39 0.14 16 34 H 0.34 4.47 7.97 -39.29 -0.31 4.16 16 35 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 1.14 6.42 -51.93 -0.33 0.81 16 37 H 0.04 0.91 4.89 -51.93 -0.25 0.66 16 38 H 0.07 1.54 8.04 -51.93 -0.42 1.12 16 39 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 40 H 0.07 1.45 7.88 -51.93 -0.41 1.04 16 41 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 0.93 5.90 -51.93 -0.31 0.62 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.06 0.60 7.87 -51.92 -0.41 0.19 16 LS Contribution 333.23 15.07 5.02 5.02 Total: -1.00 -30.24 333.23 -8.49 -38.74 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -8.23 Total: 1.17 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: -0.95 Total: -21.16 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.18 Total: -37.36 kcal Atomic # 8 Polarization: -4.11 SS G_CDS: -0.36 Total: -4.47 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.16 Total: 18.06 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.24 -8.49 -38.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449445141.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.042 kcal (2) G-P(sol) polarization free energy of solvation -30.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds