Wall clock time and date at job start Mon Mar 30 2020 08:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99698 * 2 1 4 4 C 1.53002 * 109.47166 * 149.99816 * 3 2 1 5 5 C 1.52999 * 109.47016 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47137 * 299.99551 * 5 4 3 7 7 N 1.46896 * 109.47350 * 180.02562 * 6 5 4 8 8 C 1.46898 * 111.00036 * 155.00244 * 7 6 5 9 9 H 1.08998 * 110.05566 * 325.04179 * 8 7 6 10 10 C 1.53876 * 110.03091 * 86.45840 * 8 7 6 11 11 C 1.54261 * 106.59990 * 119.28539 * 10 8 7 12 12 C 1.54888 * 104.19672 * 23.60631 * 11 10 8 13 13 H 1.09005 * 110.75648 * 80.37263 * 12 11 10 14 14 C 1.50703 * 110.75894 * 203.55764 * 12 11 10 15 15 H 1.08002 * 119.99768 * 118.54781 * 14 12 11 16 16 C 1.37878 * 119.99930 * 298.55149 * 14 12 11 17 17 N 1.31510 * 119.99586 * 180.02562 * 16 14 12 18 18 Si 1.86800 * 120.00019 * 359.97438 * 16 14 12 19 19 H 1.48492 * 109.46953 * 90.00277 * 18 16 14 20 20 H 1.48503 * 109.46931 * 210.00234 * 18 16 14 21 21 H 1.48501 * 109.47168 * 330.00047 * 18 16 14 22 22 C 1.54267 * 110.03136 * 203.62381 * 8 7 6 23 23 C 1.53004 * 109.46533 * 60.00586 * 6 5 4 24 24 C 1.52998 * 109.47478 * 269.99855 * 3 2 1 25 25 H 1.08994 * 109.47494 * 299.99898 * 1 2 3 26 26 H 1.09009 * 109.46945 * 60.00212 * 1 2 3 27 27 H 1.09000 * 109.46647 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46993 * 30.00197 * 3 2 1 29 29 H 1.08995 * 109.46927 * 60.00140 * 4 3 2 30 30 H 1.09003 * 109.47061 * 300.00465 * 4 3 2 31 31 H 1.09007 * 109.46591 * 180.02562 * 5 4 3 32 32 H 1.08995 * 109.47431 * 60.00114 * 5 4 3 33 33 H 1.08997 * 109.47167 * 300.01049 * 6 5 4 34 34 H 1.00909 * 110.99709 * 31.04921 * 7 6 5 35 35 H 1.08998 * 110.02768 * 238.57135 * 10 8 7 36 36 H 1.08999 * 110.02894 * 359.94820 * 10 8 7 37 37 H 1.09000 * 110.48928 * 142.28640 * 11 10 8 38 38 H 1.08999 * 110.48469 * 264.93049 * 11 10 8 39 39 H 0.97002 * 119.99891 * 179.97438 * 17 16 14 40 40 H 1.09004 * 110.48597 * 335.78428 * 22 8 7 41 41 H 1.08994 * 110.48679 * 98.42954 * 22 8 7 42 42 H 1.08995 * 109.47280 * 59.99898 * 23 6 5 43 43 H 1.09005 * 109.46883 * 180.02562 * 23 6 5 44 44 H 1.08995 * 109.47124 * 300.00172 * 24 3 2 45 45 H 1.09011 * 109.46537 * 60.00028 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3589 1.2634 0.7213 5 6 3.9808 2.6613 0.7218 6 6 4.1882 3.1278 -0.7205 7 7 4.7859 4.4696 -0.7201 8 6 5.5294 4.7152 -1.9629 9 1 6.0017 3.7940 -2.3042 10 6 4.5800 5.2539 -3.0474 11 6 5.1052 6.6506 -3.4387 12 6 6.6047 6.6145 -3.0525 13 1 7.1885 6.1028 -3.8177 14 6 7.1314 8.0080 -2.8249 15 1 7.5180 8.2876 -1.8560 16 6 7.1196 8.9260 -3.8536 17 7 7.5797 10.1419 -3.6550 18 14 6.4514 8.4422 -5.5295 19 1 4.9963 8.7331 -5.5851 20 1 7.1520 9.2180 -6.5844 21 1 6.6750 6.9910 -5.7515 22 6 6.5984 5.8034 -1.7330 23 6 2.8395 3.1699 -1.4417 24 6 2.2177 1.7715 -1.4425 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3632 -1.0277 -0.0005 28 1 1.3449 1.9994 0.5139 29 1 4.0241 0.5695 0.2075 30 1 3.2111 0.9314 1.7490 31 1 4.9418 2.6311 1.2353 32 1 3.3154 3.3548 1.2359 33 1 4.8536 2.4341 -1.2346 34 1 5.3769 4.6019 0.0871 35 1 4.5915 4.5942 -3.9150 36 1 3.5674 5.3323 -2.6517 37 1 4.9910 6.8148 -4.5102 38 1 4.5848 7.4254 -2.8756 39 1 7.5717 10.7877 -4.3788 40 1 6.3192 6.4413 -0.8943 41 1 7.5740 5.3492 -1.5597 42 1 2.1741 3.8634 -0.9277 43 1 2.9873 3.5018 -2.4695 44 1 2.8829 1.0776 -1.9563 45 1 1.2567 1.8015 -1.9563 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449445141.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:23 Heat of formation + Delta-G solvation = -89.551439 kcal Electronic energy + Delta-G solvation = -21123.884017 eV Core-core repulsion = 18139.130190 eV Total energy + Delta-G solvation = -2984.753827 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.55299 -39.31643 -37.55341 -35.01482 -33.76701 -31.84218 -30.25191 -29.91291 -27.95875 -26.75310 -25.33673 -23.52029 -22.54053 -21.22454 -21.02790 -20.42596 -18.71728 -17.56813 -16.99509 -16.69621 -16.66715 -16.20943 -15.95942 -15.55199 -14.93225 -14.80301 -14.60693 -14.25347 -14.03613 -13.89828 -13.45963 -13.11646 -12.97103 -12.89979 -12.68538 -12.58399 -12.23283 -12.04440 -11.97381 -11.77858 -11.60515 -11.59472 -11.46623 -11.27028 -11.14600 -11.06200 -10.99452 -10.67773 -10.34283 -9.29176 -8.27959 -6.30322 1.33228 1.35901 1.46793 2.35263 2.78912 3.08005 3.25817 3.73181 3.77332 3.90894 3.98734 4.17278 4.21665 4.22465 4.32199 4.40461 4.50707 4.54371 4.56559 4.59106 4.65701 4.74900 4.77306 4.82556 4.83720 4.88645 4.97649 5.04395 5.06610 5.14256 5.16743 5.22251 5.23929 5.28695 5.30035 5.41249 5.47790 5.52025 5.68082 5.81357 6.29749 6.31983 6.34985 6.59115 6.76098 7.34975 8.89287 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.042426 B = 0.003682 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.818092 B = 7602.386237 C = 8037.314218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.088 3.912 4 C -0.108 4.108 5 C -0.111 4.111 6 C 0.087 3.913 7 N -0.683 5.683 8 C 0.096 3.904 9 H 0.049 0.951 10 C -0.106 4.106 11 C -0.126 4.126 12 C 0.007 3.993 13 H 0.028 0.972 14 C -0.512 4.512 15 H 0.031 0.969 16 C 0.009 3.991 17 N -0.954 5.954 18 Si 0.947 3.053 19 H -0.268 1.268 20 H -0.297 1.297 21 H -0.246 1.246 22 C -0.102 4.102 23 C -0.105 4.105 24 C -0.133 4.133 25 H 0.049 0.951 26 H 0.045 0.955 27 H 0.095 0.905 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.040 0.960 34 H 0.345 0.655 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.039 0.961 38 H 0.047 0.953 39 H 0.264 0.736 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.820 -21.441 6.844 26.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C 0.031 3.969 4 C -0.146 4.146 5 C -0.149 4.149 6 C -0.023 4.023 7 N -0.315 5.315 8 C -0.014 4.014 9 H 0.067 0.933 10 C -0.144 4.144 11 C -0.164 4.164 12 C -0.013 4.013 13 H 0.046 0.954 14 C -0.550 4.550 15 H 0.050 0.950 16 C -0.187 4.187 17 N -0.595 5.595 18 Si 0.773 3.227 19 H -0.193 1.193 20 H -0.225 1.225 21 H -0.170 1.170 22 C -0.140 4.140 23 C -0.144 4.144 24 C -0.172 4.172 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.114 0.886 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.165 0.835 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.249 -21.149 6.560 26.331 hybrid contribution 0.657 0.359 -0.704 1.028 sum -13.593 -20.789 5.856 25.520 Atomic orbital electron populations 1.22941 0.79996 1.03610 1.00601 1.87867 1.21029 1.28638 1.95205 1.22220 0.95167 0.84029 0.95497 1.21493 0.95040 0.97005 1.01050 1.21622 1.01807 0.96034 0.95417 1.21646 0.95727 0.88386 0.96524 1.60604 1.38529 1.28257 1.04069 1.22108 0.92371 0.96453 0.90482 0.93304 1.22254 0.99708 0.95065 0.97364 1.22633 0.98010 0.97392 0.98361 1.20017 0.92725 0.93658 0.94851 0.95422 1.21347 1.39762 0.96469 0.97382 0.95044 1.25880 0.95334 0.94587 1.02882 1.70060 1.49246 1.05880 1.34311 0.85856 0.78603 0.79327 0.78935 1.19314 1.22451 1.16968 1.22353 0.97208 0.96179 0.98258 1.21574 0.95939 0.95927 1.00931 1.21978 1.01284 0.96725 0.97198 0.93238 0.93655 0.88619 0.91524 0.91660 0.90471 0.90624 0.90779 0.94237 0.83497 0.91864 0.90334 0.94288 0.93420 0.92691 0.92409 0.92497 0.91614 0.91871 0.91930 0.91397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.82 113.37 1.23 1.55 16 2 O -0.41 -7.73 10.35 -148.98 -1.54 -9.28 16 3 C 0.09 1.52 2.61 30.59 0.08 1.60 16 4 C -0.11 -1.77 5.57 30.59 0.17 -1.59 16 5 C -0.11 -1.88 5.19 30.60 0.16 -1.72 16 6 C 0.09 1.82 2.49 44.92 0.11 1.94 16 7 N -0.68 -17.62 6.02 -465.77 -2.80 -20.43 16 8 C 0.10 2.93 3.24 45.64 0.15 3.08 16 9 H 0.05 1.41 7.46 -2.39 -0.02 1.39 16 10 C -0.11 -3.45 5.25 31.32 0.16 -3.29 16 11 C -0.13 -5.29 5.08 31.67 0.16 -5.13 16 12 C 0.01 0.31 2.29 -10.25 -0.02 0.29 16 13 H 0.03 1.30 7.37 -2.38 -0.02 1.28 16 14 C -0.51 -29.66 9.13 25.60 0.23 -29.43 16 15 H 0.03 2.01 8.03 -2.91 -0.02 1.99 16 16 C 0.01 0.56 5.46 84.66 0.46 1.03 16 17 N -0.95 -60.90 13.96 21.45 0.30 -60.60 16 18 Si 0.95 45.73 24.46 68.60 1.68 47.41 16 19 H -0.27 -12.39 7.10 99.48 0.71 -11.68 16 20 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 21 H -0.25 -10.97 6.48 99.48 0.64 -10.33 16 22 C -0.10 -3.89 5.68 31.67 0.18 -3.71 16 23 C -0.11 -2.17 4.80 30.61 0.15 -2.03 16 24 C -0.13 -2.42 5.54 30.61 0.17 -2.25 16 25 H 0.05 0.54 8.08 -2.39 -0.02 0.52 16 26 H 0.04 0.54 7.87 -2.38 -0.02 0.52 16 27 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.07 1.07 7.79 -2.38 -0.02 1.05 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.08 1.18 8.12 -2.38 -0.02 1.16 16 32 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 33 H 0.04 0.88 7.45 -2.39 -0.02 0.86 16 34 H 0.35 8.38 7.97 -89.69 -0.71 7.67 16 35 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.08 2.42 6.42 -2.39 -0.02 2.40 16 37 H 0.04 1.63 4.89 -2.39 -0.01 1.62 16 38 H 0.05 2.16 8.04 -2.39 -0.02 2.14 16 39 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 40 H 0.06 2.34 7.88 -2.38 -0.02 2.32 16 41 H 0.06 2.04 8.14 -2.39 -0.02 2.03 16 42 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.06 1.43 5.90 -2.38 -0.01 1.42 16 44 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.07 1.15 7.87 -2.38 -0.02 1.13 16 Total: -1.00 -65.95 333.23 1.19 -64.76 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.17 Total: 17.82 kcal Atomic # 6 Polarization: -43.07 SS G_CDS: 3.39 Total: -39.68 kcal Atomic # 7 Polarization: -78.52 SS G_CDS: -2.51 Total: -81.03 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: -1.54 Total: -9.28 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.68 Total: 47.41 kcal Total: -65.95 1.19 -64.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449445141.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.793 kcal (2) G-P(sol) polarization free energy of solvation -65.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds