Wall clock time and date at job start Mon Mar 30 2020 08:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 H 1.08999 * 109.46993 * 329.99508 * 3 2 1 5 5 C 1.53003 * 109.47347 * 89.99741 * 3 2 1 6 6 C 1.52993 * 109.47164 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47407 * 300.00083 * 6 5 3 8 8 C 1.53000 * 109.47051 * 60.00212 * 7 6 5 9 9 H 1.08999 * 109.47561 * 59.99766 * 8 7 6 10 10 N 1.46903 * 109.47326 * 180.02562 * 8 7 6 11 11 C 1.46896 * 110.99621 * 274.99745 * 10 8 7 12 12 H 1.09001 * 110.43696 * 327.54267 * 11 10 8 13 13 C 1.54272 * 110.48870 * 90.22634 * 11 10 8 14 14 C 1.53867 * 106.60041 * 142.28402 * 13 11 10 15 15 C 1.54261 * 106.60055 * 0.02562 * 14 13 11 16 16 H 1.09000 * 110.49010 * 95.06648 * 15 14 13 17 17 C 1.50709 * 110.59771 * 217.65594 * 15 14 13 18 18 H 1.08000 * 119.99802 * 114.83501 * 17 15 14 19 19 C 1.37868 * 119.99859 * 294.83869 * 17 15 14 20 20 N 1.31517 * 120.00364 * 0.02562 * 19 17 15 21 21 Si 1.86801 * 119.99934 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47219 * 90.00093 * 21 19 17 23 23 H 1.48507 * 109.46881 * 209.99891 * 21 19 17 24 24 H 1.48494 * 109.47234 * 329.99841 * 21 19 17 25 25 C 1.54889 * 104.19557 * 336.38464 * 15 14 13 26 26 C 1.53001 * 109.46972 * 209.99670 * 3 2 1 27 27 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 28 28 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 30 30 H 1.08992 * 109.46809 * 300.00308 * 5 3 2 31 31 H 1.09001 * 109.46539 * 59.99795 * 5 3 2 32 32 H 1.08998 * 109.47284 * 179.97438 * 6 5 3 33 33 H 1.09005 * 109.47128 * 60.00145 * 6 5 3 34 34 H 1.08994 * 109.47480 * 300.00038 * 7 6 5 35 35 H 1.09006 * 109.46770 * 179.97438 * 7 6 5 36 36 H 1.00893 * 110.99860 * 151.04187 * 10 8 7 37 37 H 1.08998 * 110.02915 * 261.57455 * 13 11 10 38 38 H 1.09000 * 110.03007 * 22.99340 * 13 11 10 39 39 H 1.08998 * 110.03225 * 240.71097 * 14 13 11 40 40 H 1.08998 * 110.03224 * 119.28738 * 14 13 11 41 41 H 0.97004 * 120.00139 * 180.02562 * 20 19 17 42 42 H 1.08999 * 110.76240 * 279.63370 * 25 15 14 43 43 H 1.09004 * 110.75691 * 156.25760 * 25 15 14 44 44 H 1.09001 * 109.47379 * 300.00490 * 26 3 2 45 45 H 1.09008 * 109.47077 * 59.99907 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2176 1.7715 1.4425 6 6 2.8404 3.1689 1.4425 7 6 4.1892 3.1262 0.7214 8 6 3.9818 2.6603 -0.7211 9 1 3.3169 3.3543 -1.2351 10 7 5.2769 2.6186 -1.4133 11 6 5.6261 3.9381 -1.9563 12 1 4.7268 4.4777 -2.2532 13 6 6.4307 4.7521 -0.9218 14 6 7.4965 5.5334 -1.7099 15 6 7.3021 5.1676 -3.1959 16 1 6.6746 5.9079 -3.6921 17 6 8.6337 5.0545 -3.8926 18 1 8.9613 4.1010 -4.2797 19 6 9.4335 6.1683 -4.0358 20 7 9.0348 7.3293 -3.5639 21 14 11.0836 6.0283 -4.9001 22 1 10.9041 6.2768 -6.3531 23 1 12.0232 7.0320 -4.3386 24 1 11.6354 4.6649 -4.6956 25 6 6.5913 3.7919 -3.1586 26 6 3.3589 1.2633 -0.7212 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.2568 1.8015 1.9562 31 1 2.8829 1.0775 1.9563 32 1 2.9878 3.5011 2.4701 33 1 2.1755 3.8630 0.9284 34 1 4.8542 2.4321 1.2353 35 1 4.6326 4.1220 0.7211 36 1 5.2767 1.9175 -2.1388 37 1 5.7720 5.4442 -0.3973 38 1 6.9104 4.0805 -0.2097 39 1 8.4935 5.2411 -1.3803 40 1 7.3551 6.6048 -1.5679 41 1 9.5974 8.1130 -3.6650 42 1 7.3091 2.9908 -2.9820 43 1 6.0365 3.6186 -4.0807 44 1 4.0242 0.5693 -0.2074 45 1 3.2112 0.9313 -1.7489 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590656370.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:30:28 Heat of formation + Delta-G solvation = -78.269984 kcal Electronic energy + Delta-G solvation = -21021.342547 eV Core-core repulsion = 18037.077921 eV Total energy + Delta-G solvation = -2984.264626 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.58254 -37.83757 -36.33707 -33.65219 -32.00923 -30.35196 -28.85564 -28.04117 -26.66695 -25.79081 -23.64442 -22.53436 -21.54547 -20.06494 -19.22207 -18.88676 -16.78498 -16.27639 -15.79193 -15.37684 -15.06878 -14.85941 -14.60914 -14.45403 -14.01481 -13.85584 -13.22659 -12.69911 -12.59249 -12.29899 -12.10893 -11.93551 -11.66554 -11.41341 -11.14736 -11.07119 -10.86928 -10.79087 -10.65248 -10.47187 -10.42118 -10.24298 -10.01109 -9.79048 -9.64562 -9.46197 -9.04528 -8.66371 -8.32237 -8.06167 -5.95614 -3.97749 3.33848 3.40577 3.44156 3.47736 4.33941 4.49076 4.59348 4.78431 4.92304 4.99453 5.07086 5.15226 5.18643 5.27104 5.35967 5.36879 5.39254 5.44110 5.53047 5.63148 5.74329 5.83202 5.92825 5.93955 6.04256 6.06798 6.14836 6.27091 6.32204 6.50040 6.59518 6.71307 6.84887 6.91746 7.00442 7.05101 7.24902 7.41789 7.61389 7.73613 7.81063 7.97448 8.08423 8.52782 9.05289 9.65902 11.14314 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.045816 B = 0.003404 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.995355 B = 8223.373766 C = 8590.647042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.093 3.907 4 H 0.058 0.942 5 C -0.139 4.139 6 C -0.117 4.117 7 C -0.112 4.112 8 C 0.093 3.907 9 H 0.040 0.960 10 N -0.678 5.678 11 C 0.081 3.919 12 H 0.039 0.961 13 C -0.112 4.112 14 C -0.098 4.098 15 C 0.051 3.949 16 H 0.027 0.973 17 C -0.511 4.511 18 H 0.055 0.945 19 C 0.061 3.939 20 N -0.891 5.891 21 Si 0.888 3.112 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.274 1.274 25 C -0.118 4.118 26 C -0.117 4.117 27 H 0.040 0.960 28 H 0.083 0.917 29 H 0.039 0.961 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.338 0.662 37 H 0.038 0.962 38 H 0.060 0.940 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.258 0.742 42 H 0.065 0.935 43 H 0.042 0.958 44 H 0.079 0.921 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.980 -10.303 8.842 20.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C 0.035 3.965 4 H 0.076 0.924 5 C -0.176 4.176 6 C -0.156 4.156 7 C -0.150 4.150 8 C -0.017 4.017 9 H 0.058 0.942 10 N -0.309 5.309 11 C -0.028 4.028 12 H 0.057 0.943 13 C -0.150 4.150 14 C -0.136 4.136 15 C 0.032 3.968 16 H 0.046 0.954 17 C -0.549 4.549 18 H 0.073 0.927 19 C -0.140 4.140 20 N -0.529 5.529 21 Si 0.716 3.284 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.156 4.156 26 C -0.155 4.155 27 H 0.058 0.942 28 H 0.102 0.898 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.157 0.843 37 H 0.057 0.943 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.061 0.939 44 H 0.098 0.902 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.437 -10.193 9.430 20.764 hybrid contribution 0.042 0.365 -1.176 1.232 sum -15.395 -9.829 8.253 20.043 Atomic orbital electron populations 1.22764 0.81422 1.02525 0.99833 1.87914 1.19348 1.28158 1.95085 1.22112 0.94767 0.84040 0.95628 0.92386 1.22027 1.01076 0.97668 0.96871 1.21504 0.97264 0.95944 1.00848 1.21642 0.96239 1.02558 0.94567 1.21462 0.89974 0.94636 0.95620 0.94232 1.60621 1.29100 1.07959 1.33237 1.22572 0.96836 0.87970 0.95470 0.94331 1.22303 0.97732 0.97421 0.97535 1.22077 0.96273 0.98187 0.97086 1.19372 0.94906 0.90043 0.92442 0.95438 1.21165 1.02552 0.94715 1.36506 0.92716 1.24982 0.97995 0.95461 0.95596 1.69976 1.37446 0.99422 1.46097 0.86660 0.84180 0.77809 0.79732 1.20821 1.21330 1.19922 1.22769 0.97042 1.01711 0.94039 1.21758 0.95125 0.97948 1.00684 0.94159 0.89800 0.94196 0.92250 0.90980 0.91524 0.92229 0.91218 0.91054 0.84345 0.94273 0.92101 0.93081 0.93085 0.93180 0.91658 0.93889 0.90206 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.34 16 2 O -0.39 -4.30 10.35 -35.23 -0.36 -4.67 16 3 C 0.09 0.97 2.61 -26.73 -0.07 0.90 16 4 H 0.06 0.58 7.79 -51.93 -0.40 0.17 16 5 C -0.14 -1.34 5.54 -26.73 -0.15 -1.49 16 6 C -0.12 -1.17 5.92 -26.73 -0.16 -1.33 16 7 C -0.11 -1.37 5.24 -26.73 -0.14 -1.51 16 8 C 0.09 1.19 2.49 -67.73 -0.17 1.02 16 9 H 0.04 0.53 7.44 -51.93 -0.39 0.14 16 10 N -0.68 -10.22 6.14 -98.04 -0.60 -10.82 16 11 C 0.08 1.44 3.18 -66.06 -0.21 1.23 16 12 H 0.04 0.69 7.44 -51.93 -0.39 0.31 16 13 C -0.11 -2.14 5.16 -25.61 -0.13 -2.28 16 14 C -0.10 -2.31 5.60 -25.62 -0.14 -2.45 16 15 C 0.05 1.28 2.72 -90.11 -0.24 1.04 16 16 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 17 C -0.51 -14.17 8.37 -34.44 -0.29 -14.46 16 18 H 0.05 1.50 7.77 -52.49 -0.41 1.09 16 19 C 0.06 1.71 5.35 -17.82 -0.10 1.62 16 20 N -0.89 -25.95 12.63 55.43 0.70 -25.25 16 21 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 25 C -0.12 -2.42 5.65 -24.75 -0.14 -2.56 16 26 C -0.12 -1.34 4.84 -26.75 -0.13 -1.47 16 27 H 0.04 0.29 8.08 -51.93 -0.42 -0.13 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.04 0.27 7.87 -51.93 -0.41 -0.13 16 30 H 0.06 0.51 7.87 -51.93 -0.41 0.11 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.97 6.13 -51.93 -0.32 0.65 16 36 H 0.34 4.81 8.03 -39.30 -0.32 4.50 16 37 H 0.04 0.70 7.41 -51.93 -0.38 0.32 16 38 H 0.06 1.16 8.04 -51.93 -0.42 0.74 16 39 H 0.05 1.29 7.84 -51.93 -0.41 0.88 16 40 H 0.05 1.28 8.06 -51.93 -0.42 0.86 16 41 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.06 1.38 8.05 -51.93 -0.42 0.96 16 43 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.07 0.75 8.12 -51.92 -0.42 0.33 16 LS Contribution 342.85 15.07 5.17 5.17 Total: -1.00 -28.83 342.85 -9.54 -38.36 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -8.44 Total: 1.10 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: -0.98 Total: -20.41 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.10 Total: -36.07 kcal Atomic # 8 Polarization: -4.30 SS G_CDS: -0.36 Total: -4.67 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.83 -9.54 -38.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590656370.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.909 kcal (2) G-P(sol) polarization free energy of solvation -28.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds