Wall clock time and date at job start Mon Mar 30 2020 08:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 H 1.08999 * 109.46993 * 329.99508 * 3 2 1 5 5 C 1.53003 * 109.47347 * 89.99741 * 3 2 1 6 6 C 1.52993 * 109.47164 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47407 * 300.00083 * 6 5 3 8 8 C 1.53000 * 109.47051 * 60.00212 * 7 6 5 9 9 H 1.08999 * 109.47561 * 59.99766 * 8 7 6 10 10 N 1.46903 * 109.47326 * 180.02562 * 8 7 6 11 11 C 1.46896 * 110.99621 * 274.99745 * 10 8 7 12 12 H 1.09001 * 110.43696 * 327.54267 * 11 10 8 13 13 C 1.54272 * 110.48870 * 90.22634 * 11 10 8 14 14 C 1.53867 * 106.60041 * 142.28402 * 13 11 10 15 15 C 1.54261 * 106.60055 * 0.02562 * 14 13 11 16 16 H 1.09000 * 110.49010 * 95.06648 * 15 14 13 17 17 C 1.50709 * 110.59771 * 217.65594 * 15 14 13 18 18 H 1.08000 * 119.99802 * 114.83501 * 17 15 14 19 19 C 1.37868 * 119.99859 * 294.83869 * 17 15 14 20 20 N 1.31517 * 120.00364 * 0.02562 * 19 17 15 21 21 Si 1.86801 * 119.99934 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47219 * 90.00093 * 21 19 17 23 23 H 1.48507 * 109.46881 * 209.99891 * 21 19 17 24 24 H 1.48494 * 109.47234 * 329.99841 * 21 19 17 25 25 C 1.54889 * 104.19557 * 336.38464 * 15 14 13 26 26 C 1.53001 * 109.46972 * 209.99670 * 3 2 1 27 27 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 28 28 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 30 30 H 1.08992 * 109.46809 * 300.00308 * 5 3 2 31 31 H 1.09001 * 109.46539 * 59.99795 * 5 3 2 32 32 H 1.08998 * 109.47284 * 179.97438 * 6 5 3 33 33 H 1.09005 * 109.47128 * 60.00145 * 6 5 3 34 34 H 1.08994 * 109.47480 * 300.00038 * 7 6 5 35 35 H 1.09006 * 109.46770 * 179.97438 * 7 6 5 36 36 H 1.00893 * 110.99860 * 151.04187 * 10 8 7 37 37 H 1.08998 * 110.02915 * 261.57455 * 13 11 10 38 38 H 1.09000 * 110.03007 * 22.99340 * 13 11 10 39 39 H 1.08998 * 110.03225 * 240.71097 * 14 13 11 40 40 H 1.08998 * 110.03224 * 119.28738 * 14 13 11 41 41 H 0.97004 * 120.00139 * 180.02562 * 20 19 17 42 42 H 1.08999 * 110.76240 * 279.63370 * 25 15 14 43 43 H 1.09004 * 110.75691 * 156.25760 * 25 15 14 44 44 H 1.09001 * 109.47379 * 300.00490 * 26 3 2 45 45 H 1.09008 * 109.47077 * 59.99907 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2176 1.7715 1.4425 6 6 2.8404 3.1689 1.4425 7 6 4.1892 3.1262 0.7214 8 6 3.9818 2.6603 -0.7211 9 1 3.3169 3.3543 -1.2351 10 7 5.2769 2.6186 -1.4133 11 6 5.6261 3.9381 -1.9563 12 1 4.7268 4.4777 -2.2532 13 6 6.4307 4.7521 -0.9218 14 6 7.4965 5.5334 -1.7099 15 6 7.3021 5.1676 -3.1959 16 1 6.6746 5.9079 -3.6921 17 6 8.6337 5.0545 -3.8926 18 1 8.9613 4.1010 -4.2797 19 6 9.4335 6.1683 -4.0358 20 7 9.0348 7.3293 -3.5639 21 14 11.0836 6.0283 -4.9001 22 1 10.9041 6.2768 -6.3531 23 1 12.0232 7.0320 -4.3386 24 1 11.6354 4.6649 -4.6956 25 6 6.5913 3.7919 -3.1586 26 6 3.3589 1.2633 -0.7212 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.2568 1.8015 1.9562 31 1 2.8829 1.0775 1.9563 32 1 2.9878 3.5011 2.4701 33 1 2.1755 3.8630 0.9284 34 1 4.8542 2.4321 1.2353 35 1 4.6326 4.1220 0.7211 36 1 5.2767 1.9175 -2.1388 37 1 5.7720 5.4442 -0.3973 38 1 6.9104 4.0805 -0.2097 39 1 8.4935 5.2411 -1.3803 40 1 7.3551 6.6048 -1.5679 41 1 9.5974 8.1130 -3.6650 42 1 7.3091 2.9908 -2.9820 43 1 6.0365 3.6186 -4.0807 44 1 4.0242 0.5693 -0.2074 45 1 3.2112 0.9313 -1.7489 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590656370.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:30:27 Heat of formation + Delta-G solvation = -95.204671 kcal Electronic energy + Delta-G solvation = -21022.076890 eV Core-core repulsion = 18037.077921 eV Total energy + Delta-G solvation = -2984.998969 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.53128 -39.17566 -37.47941 -35.14409 -33.76482 -31.28666 -30.05082 -29.84551 -27.48867 -27.23787 -25.50875 -23.44043 -22.48774 -21.27607 -20.80911 -20.47303 -18.31569 -17.57932 -16.76938 -16.59921 -16.45458 -16.19472 -15.89494 -15.73108 -15.05745 -14.86375 -14.43201 -14.23048 -14.04834 -13.61539 -13.28383 -13.13288 -12.97092 -12.71220 -12.60835 -12.53111 -12.33448 -12.03595 -11.91304 -11.81814 -11.71559 -11.50168 -11.42210 -11.30085 -11.22750 -10.90330 -10.71909 -10.46150 -10.40774 -9.32263 -8.11082 -6.20323 1.40970 1.41797 1.52234 2.44182 2.70607 3.19952 3.26489 3.76559 3.91959 3.96751 4.04766 4.12344 4.22977 4.30381 4.36933 4.38746 4.47106 4.50776 4.55606 4.61006 4.64981 4.71996 4.86681 4.88472 5.01002 5.01755 5.07101 5.09732 5.13797 5.17674 5.19976 5.29476 5.31757 5.39240 5.42299 5.48891 5.57890 5.68318 5.92449 6.00197 6.26389 6.32176 6.42374 6.56776 6.91211 7.46917 8.98291 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.045816 B = 0.003404 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.995355 B = 8223.373766 C = 8590.647042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.094 3.906 4 H 0.066 0.934 5 C -0.134 4.134 6 C -0.112 4.112 7 C -0.111 4.111 8 C 0.095 3.905 9 H 0.040 0.960 10 N -0.679 5.679 11 C 0.097 3.903 12 H 0.043 0.957 13 C -0.099 4.099 14 C -0.089 4.089 15 C 0.040 3.960 16 H -0.003 1.003 17 C -0.530 4.530 18 H 0.053 0.947 19 C 0.009 3.991 20 N -0.922 5.922 21 Si 0.953 3.047 22 H -0.275 1.275 23 H -0.284 1.284 24 H -0.268 1.268 25 C -0.107 4.107 26 C -0.111 4.111 27 H 0.046 0.954 28 H 0.095 0.905 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.345 0.655 37 H 0.054 0.946 38 H 0.065 0.935 39 H 0.026 0.974 40 H 0.026 0.974 41 H 0.259 0.741 42 H 0.061 0.939 43 H 0.052 0.948 44 H 0.071 0.929 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.147 -11.499 9.306 22.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C 0.035 3.965 4 H 0.084 0.916 5 C -0.172 4.172 6 C -0.150 4.150 7 C -0.149 4.149 8 C -0.015 4.015 9 H 0.058 0.942 10 N -0.311 5.311 11 C -0.013 4.013 12 H 0.061 0.939 13 C -0.137 4.137 14 C -0.128 4.128 15 C 0.022 3.978 16 H 0.015 0.985 17 C -0.568 4.568 18 H 0.071 0.929 19 C -0.189 4.189 20 N -0.561 5.561 21 Si 0.778 3.222 22 H -0.201 1.201 23 H -0.210 1.210 24 H -0.192 1.192 25 C -0.145 4.145 26 C -0.149 4.149 27 H 0.065 0.935 28 H 0.114 0.886 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.164 0.836 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.090 0.910 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.619 -11.410 9.894 22.456 hybrid contribution 0.373 0.724 -1.327 1.557 sum -16.246 -10.686 8.567 21.249 Atomic orbital electron populations 1.22958 0.79810 1.03692 1.00689 1.87879 1.21177 1.28403 1.95228 1.22084 0.94181 0.84211 0.95973 0.91617 1.21979 1.01611 0.97097 0.96465 1.21460 0.95924 0.96384 1.01200 1.21618 0.97502 1.01406 0.94385 1.21495 0.88784 0.95618 0.95555 0.94158 1.60547 1.30876 1.06418 1.33240 1.22273 0.96061 0.89321 0.93639 0.93892 1.22159 0.96770 0.97411 0.97365 1.21882 0.96529 0.97250 0.97112 1.19373 0.93959 0.91914 0.92602 0.98450 1.21550 1.03847 0.94720 1.36712 0.92891 1.25782 1.01588 0.95167 0.96368 1.70102 1.38759 1.00034 1.47208 0.85636 0.79820 0.77974 0.78726 1.20088 1.21018 1.19211 1.22592 0.97274 0.98689 0.95966 1.21661 0.95688 0.96644 1.00905 0.93494 0.88608 0.93115 0.90794 0.91696 0.90475 0.91600 0.91937 0.92416 0.83577 0.92696 0.91663 0.95518 0.95536 0.93180 0.92078 0.92881 0.91042 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.82 113.37 1.23 1.55 16 2 O -0.41 -8.23 10.35 -148.98 -1.54 -9.77 16 3 C 0.09 1.75 2.61 30.60 0.08 1.83 16 4 H 0.07 1.13 7.79 -2.39 -0.02 1.11 16 5 C -0.13 -2.27 5.54 30.59 0.17 -2.10 16 6 C -0.11 -1.96 5.92 30.59 0.18 -1.78 16 7 C -0.11 -2.53 5.24 30.59 0.16 -2.36 16 8 C 0.10 2.26 2.49 44.90 0.11 2.37 16 9 H 0.04 0.98 7.44 -2.39 -0.02 0.97 16 10 N -0.68 -19.39 6.14 -464.08 -2.85 -22.24 16 11 C 0.10 3.34 3.18 45.99 0.15 3.49 16 12 H 0.04 1.48 7.44 -2.39 -0.02 1.46 16 13 C -0.10 -3.75 5.16 31.32 0.16 -3.58 16 14 C -0.09 -4.32 5.60 31.31 0.18 -4.15 16 15 C 0.04 2.07 2.72 -10.46 -0.03 2.05 16 16 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 17 C -0.53 -29.92 8.37 25.60 0.21 -29.71 16 18 H 0.05 2.93 7.77 -2.91 -0.02 2.91 16 19 C 0.01 0.53 5.35 84.65 0.45 0.99 16 20 N -0.92 -54.97 12.63 21.44 0.27 -54.69 16 21 Si 0.95 44.57 29.54 68.60 2.03 46.60 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 23 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 24 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 25 C -0.11 -4.38 5.65 31.88 0.18 -4.20 16 26 C -0.11 -2.34 4.84 30.58 0.15 -2.20 16 27 H 0.05 0.56 8.08 -2.39 -0.02 0.54 16 28 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.05 0.56 7.87 -2.39 -0.02 0.54 16 30 H 0.07 1.06 7.87 -2.39 -0.02 1.04 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.07 1.09 8.14 -2.38 -0.02 1.08 16 34 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.06 1.47 6.13 -2.38 -0.01 1.46 16 36 H 0.34 9.21 8.03 -89.70 -0.72 8.49 16 37 H 0.05 1.91 7.41 -2.39 -0.02 1.90 16 38 H 0.06 2.42 8.04 -2.39 -0.02 2.40 16 39 H 0.03 1.37 7.84 -2.39 -0.02 1.36 16 40 H 0.03 1.37 8.06 -2.39 -0.02 1.35 16 41 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 42 H 0.06 2.54 8.05 -2.39 -0.02 2.52 16 43 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 44 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.07 1.39 8.12 -2.38 -0.02 1.38 16 Total: -1.00 -62.26 342.85 1.50 -60.76 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: 0.21 Total: 17.14 kcal Atomic # 6 Polarization: -41.18 SS G_CDS: 3.38 Total: -37.80 kcal Atomic # 7 Polarization: -74.35 SS G_CDS: -2.58 Total: -76.93 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -1.54 Total: -9.77 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -62.26 1.50 -60.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590656370.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.440 kcal (2) G-P(sol) polarization free energy of solvation -62.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds