Wall clock time and date at job start Mon Mar 30 2020 08:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42898 * 114.00323 * 2 1 4 4 H 1.09007 * 109.46768 * 30.00243 * 3 2 1 5 5 C 1.52996 * 109.47064 * 270.00296 * 3 2 1 6 6 C 1.52999 * 109.47023 * 300.00019 * 5 3 2 7 7 C 1.53006 * 109.47252 * 300.00030 * 6 5 3 8 8 C 1.53001 * 109.46666 * 59.99842 * 7 6 5 9 9 H 1.08999 * 109.47253 * 60.00380 * 8 7 6 10 10 N 1.46906 * 109.46839 * 180.02562 * 8 7 6 11 11 C 1.46902 * 110.99573 * 275.00202 * 10 8 7 12 12 H 1.09001 * 110.02111 * 325.06318 * 11 10 8 13 13 C 1.53877 * 110.03350 * 86.45701 * 11 10 8 14 14 C 1.54266 * 106.60044 * 119.27872 * 13 11 10 15 15 C 1.54882 * 104.19629 * 23.61162 * 14 13 11 16 16 H 1.09000 * 110.75808 * 80.36617 * 15 14 13 17 17 C 1.50693 * 110.75917 * 203.74029 * 15 14 13 18 18 H 1.08005 * 120.00444 * 118.54557 * 17 15 14 19 19 C 1.37879 * 119.99913 * 298.54717 * 17 15 14 20 20 N 1.31503 * 120.00080 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 119.99788 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47070 * 90.00031 * 21 19 17 23 23 H 1.48506 * 109.47225 * 209.99881 * 21 19 17 24 24 H 1.48499 * 109.47554 * 330.00212 * 21 19 17 25 25 C 1.54267 * 110.03049 * 203.61725 * 11 10 8 26 26 C 1.52996 * 109.47045 * 149.99975 * 3 2 1 27 27 H 1.08995 * 109.47202 * 180.02562 * 1 2 3 28 28 H 1.09010 * 109.46886 * 300.00108 * 1 2 3 29 29 H 1.08994 * 109.47005 * 59.99099 * 1 2 3 30 30 H 1.09002 * 109.47172 * 59.99997 * 5 3 2 31 31 H 1.08999 * 109.47180 * 179.97438 * 5 3 2 32 32 H 1.08999 * 109.47173 * 59.99959 * 6 5 3 33 33 H 1.08999 * 109.47006 * 180.02562 * 6 5 3 34 34 H 1.09008 * 109.46796 * 300.00613 * 7 6 5 35 35 H 1.08996 * 109.47086 * 180.02562 * 7 6 5 36 36 H 1.00896 * 111.00309 * 151.04614 * 10 8 7 37 37 H 1.09001 * 110.02829 * 238.56697 * 13 11 10 38 38 H 1.09008 * 110.02815 * 359.97438 * 13 11 10 39 39 H 1.08999 * 110.48058 * 142.28927 * 14 13 11 40 40 H 1.08997 * 110.48584 * 264.79898 * 14 13 11 41 41 H 0.97006 * 120.00114 * 179.97438 * 20 19 17 42 42 H 1.09003 * 110.48464 * 335.78591 * 25 11 10 43 43 H 1.08999 * 110.48631 * 98.42703 * 25 11 10 44 44 H 1.08999 * 109.47280 * 300.00208 * 26 3 2 45 45 H 1.08999 * 109.46973 * 179.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 1 1.3451 1.9993 0.5139 5 6 2.2177 1.7713 -1.4425 6 6 3.1514 0.7972 -2.1637 7 6 4.5002 0.7549 -1.4425 8 6 4.2927 0.2890 0.0000 9 1 3.8493 -0.7067 0.0000 10 7 5.5876 0.2490 0.6926 11 6 6.2768 -1.0249 0.4468 12 1 5.5507 -1.8349 0.3786 13 6 7.0948 -0.9393 -0.8537 14 6 8.5686 -1.1746 -0.4636 15 6 8.4882 -1.9660 0.8653 16 1 8.2961 -3.0219 0.6750 17 6 9.7495 -1.7877 1.6703 18 1 9.7059 -1.3327 2.6489 19 6 10.9594 -2.2055 1.1577 20 7 11.0125 -2.7600 -0.0336 21 14 12.5230 -1.9839 2.1553 22 1 12.7471 -3.1859 2.9980 23 1 13.6751 -1.8020 1.2361 24 1 12.3900 -0.7875 3.0250 25 6 7.2822 -1.3092 1.5818 26 6 3.3590 1.2631 0.7212 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.2569 1.8014 -1.9563 31 1 2.6607 2.7672 -1.4425 32 1 2.7081 -0.1985 -2.1637 33 1 3.2996 1.1294 -3.1913 34 1 4.9436 1.7508 -1.4425 35 1 5.1655 0.0613 -1.9567 36 1 5.4740 0.4137 1.6815 37 1 6.7661 -1.7083 -1.5527 38 1 6.9799 0.0474 -1.3027 39 1 9.0762 -1.7630 -1.2280 40 1 9.0799 -0.2237 -0.3134 41 1 11.8637 -3.0535 -0.3944 42 1 7.5852 -0.3801 2.0646 43 1 6.8511 -1.9958 2.3103 44 1 3.2112 0.9312 1.7489 45 1 3.8026 2.2587 0.7208 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590656371.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:30:31 Heat of formation + Delta-G solvation = -73.615171 kcal Electronic energy + Delta-G solvation = -21299.877396 eV Core-core repulsion = 18315.814618 eV Total energy + Delta-G solvation = -2984.062778 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.65345 -37.73521 -35.98663 -33.51363 -31.92499 -30.39959 -28.80119 -27.98654 -26.70215 -25.71102 -23.67282 -22.48886 -21.56604 -19.77475 -19.07870 -18.80239 -16.45933 -16.30236 -15.86582 -15.49327 -15.06498 -14.91094 -14.48188 -14.41600 -13.72779 -13.71116 -12.75041 -12.68306 -12.58936 -12.27793 -12.01606 -11.93018 -11.62535 -11.43572 -11.32635 -10.98980 -10.85670 -10.70146 -10.62030 -10.44350 -10.23746 -10.14825 -9.83196 -9.61694 -9.58915 -9.30878 -9.00377 -8.65934 -8.26865 -7.93113 -5.91168 -3.93567 3.36146 3.42681 3.46273 3.62351 4.39512 4.52186 4.61951 4.71353 5.02246 5.07502 5.11610 5.19613 5.24863 5.41005 5.43092 5.44325 5.47446 5.52702 5.67009 5.74809 5.80470 5.84244 5.95938 6.02070 6.13671 6.17475 6.26286 6.40108 6.47974 6.56901 6.65398 6.78741 6.92026 7.03614 7.05611 7.12879 7.32467 7.48387 7.74092 7.82001 7.90975 8.05187 8.15286 8.56506 9.08427 9.69712 11.18044 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.043296 B = 0.003641 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.554144 B = 7688.966965 C = 7901.355917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.378 6.378 3 C 0.092 3.908 4 H 0.058 0.942 5 C -0.139 4.139 6 C -0.114 4.114 7 C -0.110 4.110 8 C 0.094 3.906 9 H 0.048 0.952 10 N -0.680 5.680 11 C 0.085 3.915 12 H 0.032 0.968 13 C -0.118 4.118 14 C -0.096 4.096 15 C 0.052 3.948 16 H 0.026 0.974 17 C -0.510 4.510 18 H 0.054 0.946 19 C 0.061 3.939 20 N -0.890 5.890 21 Si 0.888 3.112 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.275 1.275 25 C -0.119 4.119 26 C -0.117 4.117 27 H 0.083 0.917 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.335 0.665 37 H 0.041 0.959 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.258 0.742 42 H 0.063 0.937 43 H 0.041 0.959 44 H 0.064 0.936 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.915 8.357 -2.164 21.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.297 6.297 3 C 0.034 3.966 4 H 0.076 0.924 5 C -0.177 4.177 6 C -0.152 4.152 7 C -0.148 4.148 8 C -0.016 4.016 9 H 0.066 0.934 10 N -0.311 5.311 11 C -0.024 4.024 12 H 0.049 0.951 13 C -0.156 4.156 14 C -0.135 4.135 15 C 0.033 3.967 16 H 0.044 0.956 17 C -0.549 4.549 18 H 0.072 0.928 19 C -0.140 4.140 20 N -0.529 5.529 21 Si 0.716 3.284 22 H -0.209 1.209 23 H -0.213 1.213 24 H -0.200 1.200 25 C -0.157 4.157 26 C -0.155 4.155 27 H 0.101 0.899 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.153 0.847 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.082 0.918 43 H 0.059 0.941 44 H 0.083 0.917 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -19.337 8.444 -2.790 21.284 hybrid contribution 0.099 -0.273 1.007 1.048 sum -19.239 8.170 -1.783 20.978 Atomic orbital electron populations 1.22756 0.81745 1.02535 0.99572 1.87977 1.18963 1.27797 1.94988 1.22110 0.94559 0.84450 0.95523 0.92420 1.22016 0.99907 0.99777 0.96008 1.21440 0.95726 0.99735 0.98319 1.21655 0.96142 1.02112 0.94911 1.21436 0.88415 0.97645 0.94132 0.93369 1.60732 1.20001 1.35427 1.14985 1.22326 0.94788 0.87715 0.97560 0.95051 1.22389 0.97976 0.99858 0.95376 1.22228 0.91560 0.99743 0.99930 1.19510 0.91120 0.94306 0.91780 0.95590 1.21138 0.91777 1.39484 1.02475 0.92801 1.24971 0.98843 0.95193 0.94961 1.69966 1.25381 1.41152 1.16388 0.86663 0.83288 0.78400 0.80025 1.20853 1.21345 1.19975 1.22653 0.96844 1.00233 0.95938 1.21833 0.93591 1.01199 0.98876 0.89856 0.94344 0.94314 0.92329 0.91060 0.91586 0.92315 0.91762 0.91146 0.84717 0.94035 0.92105 0.91801 0.93551 0.93222 0.91807 0.94066 0.91679 0.89968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.34 16 2 O -0.38 -4.33 9.00 -35.23 -0.32 -4.65 16 3 C 0.09 0.93 2.92 -26.74 -0.08 0.85 16 4 H 0.06 0.49 7.79 -51.92 -0.40 0.09 16 5 C -0.14 -1.33 5.63 -26.73 -0.15 -1.48 16 6 C -0.11 -1.28 5.78 -26.73 -0.15 -1.43 16 7 C -0.11 -1.47 4.80 -26.73 -0.13 -1.59 16 8 C 0.09 1.30 2.35 -67.71 -0.16 1.14 16 9 H 0.05 0.76 6.99 -51.93 -0.36 0.40 16 10 N -0.68 -10.88 6.02 -98.56 -0.59 -11.47 16 11 C 0.09 1.60 3.24 -66.59 -0.22 1.38 16 12 H 0.03 0.59 7.46 -51.93 -0.39 0.21 16 13 C -0.12 -2.37 5.25 -25.61 -0.13 -2.50 16 14 C -0.10 -2.34 5.56 -25.08 -0.14 -2.48 16 15 C 0.05 1.32 2.82 -89.79 -0.25 1.07 16 16 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 17 C -0.51 -14.37 8.54 -34.44 -0.29 -14.66 16 18 H 0.05 1.50 7.78 -52.48 -0.41 1.09 16 19 C 0.06 1.75 5.33 -17.82 -0.10 1.65 16 20 N -0.89 -26.13 12.02 55.43 0.67 -25.46 16 21 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 25 C -0.12 -2.53 5.67 -25.07 -0.14 -2.67 16 26 C -0.12 -1.32 4.93 -26.73 -0.13 -1.46 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.04 0.27 8.09 -51.92 -0.42 -0.15 16 29 H 0.04 0.27 7.87 -51.93 -0.41 -0.14 16 30 H 0.06 0.50 7.87 -51.93 -0.41 0.09 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.81 7.68 -51.93 -0.40 0.41 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 35 H 0.07 1.05 5.90 -51.93 -0.31 0.74 16 36 H 0.33 5.03 7.97 -39.29 -0.31 4.71 16 37 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 1.17 6.42 -51.92 -0.33 0.83 16 39 H 0.06 1.68 7.37 -51.93 -0.38 1.30 16 40 H 0.05 1.18 8.04 -51.93 -0.42 0.76 16 41 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.06 1.37 7.88 -51.93 -0.41 0.97 16 43 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 45 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 338.22 15.07 5.10 5.10 Total: -1.00 -29.37 338.22 -9.45 -38.82 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -8.30 Total: 1.80 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: -0.98 Total: -20.85 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.07 Total: -36.93 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: -0.32 Total: -4.65 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.37 -9.45 -38.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590656371.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.798 kcal (2) G-P(sol) polarization free energy of solvation -29.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds