Wall clock time and date at job start Mon Mar 30 2020 08:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42898 * 114.00323 * 2 1 4 4 H 1.09007 * 109.46768 * 30.00243 * 3 2 1 5 5 C 1.52996 * 109.47064 * 270.00296 * 3 2 1 6 6 C 1.52999 * 109.47023 * 300.00019 * 5 3 2 7 7 C 1.53006 * 109.47252 * 300.00030 * 6 5 3 8 8 C 1.53001 * 109.46666 * 59.99842 * 7 6 5 9 9 H 1.08999 * 109.47253 * 60.00380 * 8 7 6 10 10 N 1.46906 * 109.46839 * 180.02562 * 8 7 6 11 11 C 1.46902 * 110.99573 * 275.00202 * 10 8 7 12 12 H 1.09001 * 110.02111 * 325.06318 * 11 10 8 13 13 C 1.53877 * 110.03350 * 86.45701 * 11 10 8 14 14 C 1.54266 * 106.60044 * 119.27872 * 13 11 10 15 15 C 1.54882 * 104.19629 * 23.61162 * 14 13 11 16 16 H 1.09000 * 110.75808 * 80.36617 * 15 14 13 17 17 C 1.50693 * 110.75917 * 203.74029 * 15 14 13 18 18 H 1.08005 * 120.00444 * 118.54557 * 17 15 14 19 19 C 1.37879 * 119.99913 * 298.54717 * 17 15 14 20 20 N 1.31503 * 120.00080 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 119.99788 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47070 * 90.00031 * 21 19 17 23 23 H 1.48506 * 109.47225 * 209.99881 * 21 19 17 24 24 H 1.48499 * 109.47554 * 330.00212 * 21 19 17 25 25 C 1.54267 * 110.03049 * 203.61725 * 11 10 8 26 26 C 1.52996 * 109.47045 * 149.99975 * 3 2 1 27 27 H 1.08995 * 109.47202 * 180.02562 * 1 2 3 28 28 H 1.09010 * 109.46886 * 300.00108 * 1 2 3 29 29 H 1.08994 * 109.47005 * 59.99099 * 1 2 3 30 30 H 1.09002 * 109.47172 * 59.99997 * 5 3 2 31 31 H 1.08999 * 109.47180 * 179.97438 * 5 3 2 32 32 H 1.08999 * 109.47173 * 59.99959 * 6 5 3 33 33 H 1.08999 * 109.47006 * 180.02562 * 6 5 3 34 34 H 1.09008 * 109.46796 * 300.00613 * 7 6 5 35 35 H 1.08996 * 109.47086 * 180.02562 * 7 6 5 36 36 H 1.00896 * 111.00309 * 151.04614 * 10 8 7 37 37 H 1.09001 * 110.02829 * 238.56697 * 13 11 10 38 38 H 1.09008 * 110.02815 * 359.97438 * 13 11 10 39 39 H 1.08999 * 110.48058 * 142.28927 * 14 13 11 40 40 H 1.08997 * 110.48584 * 264.79898 * 14 13 11 41 41 H 0.97006 * 120.00114 * 179.97438 * 20 19 17 42 42 H 1.09003 * 110.48464 * 335.78591 * 25 11 10 43 43 H 1.08999 * 110.48631 * 98.42703 * 25 11 10 44 44 H 1.08999 * 109.47280 * 300.00208 * 26 3 2 45 45 H 1.08999 * 109.46973 * 179.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 1 1.3451 1.9993 0.5139 5 6 2.2177 1.7713 -1.4425 6 6 3.1514 0.7972 -2.1637 7 6 4.5002 0.7549 -1.4425 8 6 4.2927 0.2890 0.0000 9 1 3.8493 -0.7067 0.0000 10 7 5.5876 0.2490 0.6926 11 6 6.2768 -1.0249 0.4468 12 1 5.5507 -1.8349 0.3786 13 6 7.0948 -0.9393 -0.8537 14 6 8.5686 -1.1746 -0.4636 15 6 8.4882 -1.9660 0.8653 16 1 8.2961 -3.0219 0.6750 17 6 9.7495 -1.7877 1.6703 18 1 9.7059 -1.3327 2.6489 19 6 10.9594 -2.2055 1.1577 20 7 11.0125 -2.7600 -0.0336 21 14 12.5230 -1.9839 2.1553 22 1 12.7471 -3.1859 2.9980 23 1 13.6751 -1.8020 1.2361 24 1 12.3900 -0.7875 3.0250 25 6 7.2822 -1.3092 1.5818 26 6 3.3590 1.2631 0.7212 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.2569 1.8014 -1.9563 31 1 2.6607 2.7672 -1.4425 32 1 2.7081 -0.1985 -2.1637 33 1 3.2996 1.1294 -3.1913 34 1 4.9436 1.7508 -1.4425 35 1 5.1655 0.0613 -1.9567 36 1 5.4740 0.4137 1.6815 37 1 6.7661 -1.7083 -1.5527 38 1 6.9799 0.0474 -1.3027 39 1 9.0762 -1.7630 -1.2280 40 1 9.0799 -0.2237 -0.3134 41 1 11.8637 -3.0535 -0.3944 42 1 7.5852 -0.3801 2.0646 43 1 6.8511 -1.9958 2.3103 44 1 3.2112 0.9312 1.7489 45 1 3.8026 2.2587 0.7208 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590656371.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:30:31 Heat of formation + Delta-G solvation = -90.989843 kcal Electronic energy + Delta-G solvation = -21300.630818 eV Core-core repulsion = 18315.814618 eV Total energy + Delta-G solvation = -2984.816201 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.60966 -39.17383 -37.14664 -35.05876 -33.68462 -31.34767 -30.05584 -29.84192 -27.52346 -27.19120 -25.56896 -23.45107 -22.57160 -21.16391 -20.77996 -20.21863 -18.37043 -17.29353 -16.80407 -16.63158 -16.53073 -16.28757 -15.96317 -15.64552 -15.05435 -14.68208 -14.40616 -13.97648 -13.83493 -13.43730 -13.27816 -13.16698 -12.95564 -12.75442 -12.71880 -12.53210 -12.33781 -12.18290 -11.96430 -11.83467 -11.63053 -11.50144 -11.38116 -11.23435 -10.99384 -10.79371 -10.72179 -10.42644 -10.36129 -9.27651 -8.08765 -6.19034 1.41911 1.42544 1.53190 2.45199 2.93763 3.21250 3.22342 3.77539 3.91060 4.02432 4.07517 4.17833 4.30142 4.32577 4.36746 4.48396 4.50831 4.60040 4.64370 4.67915 4.73607 4.77827 4.86309 4.86835 5.01353 5.02266 5.05330 5.14659 5.18674 5.20013 5.23322 5.32170 5.37685 5.41069 5.43641 5.51540 5.60862 5.69119 5.94095 6.03230 6.33648 6.37152 6.41641 6.63086 6.91110 7.48018 8.99713 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.043296 B = 0.003641 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.554144 B = 7688.966965 C = 7901.355917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.091 3.909 4 H 0.080 0.920 5 C -0.136 4.136 6 C -0.110 4.110 7 C -0.109 4.109 8 C 0.096 3.904 9 H 0.030 0.970 10 N -0.680 5.680 11 C 0.099 3.901 12 H 0.033 0.967 13 C -0.105 4.105 14 C -0.087 4.087 15 C 0.040 3.960 16 H -0.004 1.004 17 C -0.531 4.531 18 H 0.053 0.947 19 C 0.010 3.990 20 N -0.920 5.920 21 Si 0.955 3.045 22 H -0.276 1.276 23 H -0.284 1.284 24 H -0.267 1.267 25 C -0.107 4.107 26 C -0.113 4.113 27 H 0.087 0.913 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.049 0.951 36 H 0.342 0.658 37 H 0.045 0.955 38 H 0.072 0.928 39 H 0.034 0.966 40 H 0.028 0.972 41 H 0.259 0.741 42 H 0.063 0.937 43 H 0.049 0.951 44 H 0.066 0.934 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.380 9.965 -1.563 23.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C 0.033 3.967 4 H 0.097 0.903 5 C -0.173 4.173 6 C -0.148 4.148 7 C -0.147 4.147 8 C -0.013 4.013 9 H 0.048 0.952 10 N -0.312 5.312 11 C -0.011 4.011 12 H 0.051 0.949 13 C -0.143 4.143 14 C -0.126 4.126 15 C 0.021 3.979 16 H 0.014 0.986 17 C -0.569 4.569 18 H 0.071 0.929 19 C -0.189 4.189 20 N -0.559 5.559 21 Si 0.780 3.220 22 H -0.201 1.201 23 H -0.210 1.210 24 H -0.192 1.192 25 C -0.145 4.145 26 C -0.151 4.151 27 H 0.105 0.895 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.162 0.838 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.053 0.947 40 H 0.047 0.953 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.068 0.932 44 H 0.084 0.916 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -20.824 10.061 -2.178 23.229 hybrid contribution 0.534 -0.810 0.805 1.261 sum -20.290 9.250 -1.373 22.341 Atomic orbital electron populations 1.22911 0.80228 1.03252 1.00682 1.87946 1.20757 1.28663 1.95161 1.22167 0.94106 0.84571 0.95869 0.90254 1.22008 1.00161 0.99609 0.95557 1.21386 0.94770 0.99750 0.98893 1.21621 0.97113 1.01404 0.94544 1.21447 0.87616 0.97625 0.94652 0.95227 1.60673 1.21343 1.33300 1.15840 1.22039 0.94264 0.89276 0.95534 0.94914 1.22264 0.95113 1.00631 0.96340 1.22013 0.93994 0.97931 0.98613 1.19514 0.92402 0.93071 0.92910 0.98632 1.21506 0.93109 1.39553 1.02761 0.92872 1.25791 1.02174 0.94881 0.96017 1.70103 1.26152 1.41854 1.17830 0.85609 0.79125 0.78654 0.78581 1.20136 1.20982 1.19151 1.22479 0.95683 0.99836 0.96528 1.21810 0.93829 1.00719 0.98745 0.89492 0.93166 0.93190 0.90918 0.89920 0.92888 0.91349 0.91665 0.93214 0.83843 0.93579 0.90961 0.94682 0.95288 0.93195 0.91882 0.93196 0.91552 0.88991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.82 113.37 1.23 1.58 16 2 O -0.41 -8.48 9.00 -148.98 -1.34 -9.82 16 3 C 0.09 1.59 2.92 30.59 0.09 1.67 16 4 H 0.08 1.06 7.79 -2.38 -0.02 1.04 16 5 C -0.14 -2.20 5.63 30.59 0.17 -2.02 16 6 C -0.11 -2.27 5.78 30.60 0.18 -2.09 16 7 C -0.11 -2.75 4.80 30.60 0.15 -2.61 16 8 C 0.10 2.53 2.35 44.91 0.11 2.64 16 9 H 0.03 0.91 6.99 -2.39 -0.02 0.89 16 10 N -0.68 -20.87 6.02 -465.75 -2.80 -23.67 16 11 C 0.10 3.66 3.24 45.64 0.15 3.81 16 12 H 0.03 1.22 7.46 -2.39 -0.02 1.21 16 13 C -0.11 -4.25 5.25 31.32 0.16 -4.09 16 14 C -0.09 -4.37 5.56 31.67 0.18 -4.19 16 15 C 0.04 2.10 2.82 -10.25 -0.03 2.07 16 16 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 17 C -0.53 -30.42 8.54 25.60 0.22 -30.20 16 18 H 0.05 2.97 7.78 -2.91 -0.02 2.95 16 19 C 0.01 0.56 5.33 84.66 0.45 1.02 16 20 N -0.92 -55.33 12.02 21.45 0.26 -55.07 16 21 Si 0.95 44.90 29.54 68.60 2.03 46.93 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 23 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 24 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 25 C -0.11 -4.56 5.67 31.67 0.18 -4.38 16 26 C -0.11 -2.30 4.93 30.59 0.15 -2.14 16 27 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.05 0.57 8.09 -2.38 -0.02 0.55 16 29 H 0.05 0.57 7.87 -2.39 -0.02 0.55 16 30 H 0.07 1.00 7.87 -2.39 -0.02 0.98 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.05 1.24 7.68 -2.39 -0.02 1.22 16 33 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.05 1.45 5.90 -2.39 -0.01 1.43 16 36 H 0.34 9.70 7.97 -89.70 -0.71 8.99 16 37 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.07 2.75 6.42 -2.38 -0.02 2.73 16 39 H 0.03 1.92 7.37 -2.39 -0.02 1.90 16 40 H 0.03 1.51 8.04 -2.39 -0.02 1.49 16 41 H 0.26 14.81 8.31 -92.70 -0.77 14.04 16 42 H 0.06 2.68 7.88 -2.39 -0.02 2.66 16 43 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.07 1.33 8.12 -2.39 -0.02 1.31 16 45 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -63.84 338.22 1.74 -62.10 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.23 Total: 18.48 kcal Atomic # 6 Polarization: -42.33 SS G_CDS: 3.38 Total: -38.95 kcal Atomic # 7 Polarization: -76.20 SS G_CDS: -2.55 Total: -78.74 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -1.34 Total: -9.82 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -63.84 1.74 -62.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590656371.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.891 kcal (2) G-P(sol) polarization free energy of solvation -63.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds