Wall clock time and date at job start Mon Mar 30 2020 08:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 113.99999 * 2 1 4 4 H 1.08999 * 109.46823 * 330.00160 * 3 2 1 5 5 C 1.52995 * 109.46776 * 89.99994 * 3 2 1 6 6 C 1.52998 * 109.47173 * 60.00323 * 5 3 2 7 7 C 1.53000 * 109.47400 * 59.99916 * 6 5 3 8 8 C 1.53003 * 109.46586 * 300.00161 * 7 6 5 9 9 H 1.08999 * 109.46820 * 299.99396 * 8 7 6 10 10 N 1.46911 * 109.46786 * 180.02562 * 8 7 6 11 11 C 1.46898 * 110.99854 * 84.99915 * 10 8 7 12 12 H 1.09001 * 110.05622 * 326.41047 * 11 10 8 13 13 C 1.53869 * 110.03268 * 87.83327 * 11 10 8 14 14 C 1.54267 * 106.59932 * 119.28147 * 13 11 10 15 15 C 1.54891 * 104.19707 * 23.60970 * 14 13 11 16 16 H 1.09005 * 110.91507 * 80.43868 * 15 14 13 17 17 C 1.50697 * 110.76075 * 203.74561 * 15 14 13 18 18 H 1.07991 * 120.00449 * 113.04945 * 17 15 14 19 19 C 1.37885 * 119.99686 * 293.32777 * 17 15 14 20 20 N 1.31516 * 119.99913 * 359.72095 * 19 17 15 21 21 Si 1.86798 * 119.99766 * 179.72528 * 19 17 15 22 22 H 1.48498 * 109.47416 * 59.99812 * 21 19 17 23 23 H 1.48508 * 109.46609 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46903 * 299.99397 * 21 19 17 25 25 C 1.54269 * 110.03046 * 204.99988 * 11 10 8 26 26 C 1.52999 * 109.47375 * 60.00225 * 8 7 6 27 27 H 1.08998 * 109.47534 * 60.00271 * 1 2 3 28 28 H 1.09007 * 109.46866 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47534 * 299.99795 * 1 2 3 30 30 H 1.09008 * 109.46870 * 179.97438 * 5 3 2 31 31 H 1.09002 * 109.47740 * 299.99803 * 5 3 2 32 32 H 1.09007 * 109.47237 * 179.97438 * 6 5 3 33 33 H 1.08999 * 109.47023 * 299.99854 * 6 5 3 34 34 H 1.08999 * 109.47447 * 179.97438 * 7 6 5 35 35 H 1.08999 * 109.47048 * 59.99418 * 7 6 5 36 36 H 1.00900 * 110.99556 * 208.95254 * 10 8 7 37 37 H 1.09003 * 110.03087 * 238.56564 * 13 11 10 38 38 H 1.08999 * 110.03482 * 359.97438 * 13 11 10 39 39 H 1.09001 * 110.48713 * 264.93393 * 14 13 11 40 40 H 1.09007 * 110.48904 * 142.28257 * 14 13 11 41 41 H 0.97000 * 119.99651 * 180.02562 * 20 19 17 42 42 H 1.08997 * 110.48714 * 98.42301 * 25 11 10 43 43 H 1.09004 * 110.48291 * 335.78219 * 25 11 10 44 44 H 1.08999 * 109.47351 * 59.99540 * 26 8 7 45 45 H 1.08999 * 109.46902 * 180.02562 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 -0.5138 5 6 2.2176 1.7713 1.4425 6 6 3.1514 0.7973 2.1637 7 6 4.5001 0.7551 1.4425 8 6 4.2926 0.2893 0.0000 9 1 3.8493 -0.7065 0.0000 10 7 5.5877 0.2482 -0.6924 11 6 6.2759 -1.0261 -0.4464 12 1 6.0499 -1.3852 0.5576 13 6 5.8413 -2.0699 -1.4900 14 6 7.1152 -2.4864 -2.2538 15 6 8.2691 -2.1650 -1.2717 16 1 8.3758 -2.9526 -0.5257 17 6 9.5627 -1.9588 -2.0166 18 1 10.0246 -0.9828 -2.0368 19 6 10.1537 -3.0150 -2.6773 20 7 9.5912 -4.2035 -2.6527 21 14 11.7533 -2.7576 -3.6071 22 1 12.8030 -2.2902 -2.6664 23 1 12.1775 -4.0390 -4.2262 24 1 11.5504 -1.7389 -4.6684 25 6 7.7989 -0.8447 -0.6124 26 6 3.3588 1.2633 -0.7213 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 2.6614 2.7669 1.4425 31 1 1.2568 1.8014 1.9564 32 1 3.2996 1.1294 3.1913 33 1 2.7081 -0.1985 2.1636 34 1 5.1656 0.0616 1.9565 35 1 4.9434 1.7509 1.4424 36 1 5.4743 0.4130 -1.6814 37 1 5.4043 -2.9357 -0.9925 38 1 5.1193 -1.6311 -2.1788 39 1 7.2194 -1.9031 -3.1687 40 1 7.0929 -3.5525 -2.4802 41 1 10.0072 -4.9466 -3.1172 42 1 8.2754 -0.7124 0.3590 43 1 8.0134 0.0037 -1.2622 44 1 3.8022 2.2591 -0.7212 45 1 3.2107 0.9312 -1.7488 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590656373.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:30:39 Heat of formation + Delta-G solvation = -76.169976 kcal Electronic energy + Delta-G solvation = -21259.987937 eV Core-core repulsion = 18275.814374 eV Total energy + Delta-G solvation = -2984.173563 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.65154 -37.77617 -36.04232 -33.50077 -31.90574 -30.41736 -28.76817 -27.88894 -26.71272 -25.83623 -23.51099 -22.64291 -21.60906 -19.69657 -19.09427 -18.97853 -16.53030 -16.32001 -15.91720 -15.53688 -15.11934 -14.81000 -14.49183 -13.92004 -13.80132 -13.77220 -12.82867 -12.70387 -12.58650 -12.27336 -12.13895 -11.97199 -11.63302 -11.47122 -11.35577 -10.97857 -10.87630 -10.81638 -10.64561 -10.47354 -10.33653 -10.20696 -9.83856 -9.67686 -9.60469 -9.46331 -8.98339 -8.70882 -8.28351 -7.83276 -5.92396 -3.94304 3.37470 3.41684 3.44678 3.63318 4.39448 4.52183 4.61161 4.70306 5.01080 5.07786 5.12761 5.18106 5.24079 5.39090 5.42615 5.45415 5.46546 5.50294 5.66820 5.69394 5.79398 5.80812 5.93319 5.95083 6.06659 6.15345 6.24533 6.33054 6.42466 6.51954 6.65014 6.80464 6.85234 6.95167 7.06596 7.16126 7.24790 7.43084 7.70578 7.78652 7.89826 8.00042 8.13587 8.56832 9.08862 9.69097 11.17393 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.039967 B = 0.003670 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.412203 B = 7627.833428 C = 7896.160080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.378 6.378 3 C 0.091 3.909 4 H 0.058 0.942 5 C -0.139 4.139 6 C -0.114 4.114 7 C -0.105 4.105 8 C 0.091 3.909 9 H 0.051 0.949 10 N -0.682 5.682 11 C 0.085 3.915 12 H 0.064 0.936 13 C -0.152 4.152 14 C -0.100 4.100 15 C 0.048 3.952 16 H 0.030 0.970 17 C -0.510 4.510 18 H 0.054 0.946 19 C 0.061 3.939 20 N -0.892 5.892 21 Si 0.888 3.112 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.278 1.278 25 C -0.102 4.102 26 C -0.117 4.117 27 H 0.038 0.962 28 H 0.083 0.917 29 H 0.038 0.962 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.338 0.662 37 H 0.047 0.953 38 H 0.043 0.957 39 H 0.045 0.955 40 H 0.061 0.939 41 H 0.259 0.741 42 H 0.044 0.956 43 H 0.060 0.940 44 H 0.081 0.919 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.767 10.630 6.428 21.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.296 6.296 3 C 0.033 3.967 4 H 0.076 0.924 5 C -0.177 4.177 6 C -0.152 4.152 7 C -0.143 4.143 8 C -0.018 4.018 9 H 0.069 0.931 10 N -0.313 5.313 11 C -0.024 4.024 12 H 0.082 0.918 13 C -0.191 4.191 14 C -0.138 4.138 15 C 0.029 3.971 16 H 0.048 0.952 17 C -0.548 4.548 18 H 0.073 0.927 19 C -0.140 4.140 20 N -0.531 5.531 21 Si 0.716 3.284 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.204 1.204 25 C -0.140 4.140 26 C -0.155 4.155 27 H 0.057 0.943 28 H 0.102 0.898 29 H 0.057 0.943 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.156 0.844 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.100 0.900 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.294 10.614 6.860 21.420 hybrid contribution 0.019 -0.373 -1.141 1.201 sum -17.275 10.241 5.719 20.881 Atomic orbital electron populations 1.22757 0.81741 1.02567 0.99549 1.87984 1.18965 1.27719 1.94975 1.22111 0.94611 0.84513 0.95448 0.92396 1.22014 0.99891 0.99720 0.96064 1.21427 0.95645 0.99857 0.98245 1.21517 0.96050 1.01872 0.94906 1.21371 0.88774 0.97794 0.93902 0.93127 1.60764 1.19954 1.35032 1.15523 1.22330 0.95831 0.86785 0.97491 0.91773 1.22942 0.99357 0.98675 0.98135 1.22269 0.92732 1.00618 0.98179 1.19587 0.92844 0.91276 0.93410 0.95157 1.21124 1.06705 0.95396 1.31567 0.92734 1.24991 0.97219 0.95276 0.96531 1.69959 1.39363 1.00366 1.43384 0.86723 0.84226 0.77193 0.80210 1.20332 1.21450 1.20358 1.22436 0.91381 1.00620 0.99538 1.21821 0.93548 1.01093 0.98992 0.94325 0.89833 0.94346 0.91063 0.92283 0.92329 0.91520 0.92019 0.91705 0.84353 0.93376 0.93834 0.93652 0.92035 0.93165 0.93728 0.92122 0.90012 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.35 16 2 O -0.38 -4.37 9.00 -35.23 -0.32 -4.69 16 3 C 0.09 0.93 2.92 -26.73 -0.08 0.85 16 4 H 0.06 0.50 7.79 -51.93 -0.40 0.09 16 5 C -0.14 -1.30 5.63 -26.73 -0.15 -1.45 16 6 C -0.11 -1.22 5.78 -26.73 -0.15 -1.38 16 7 C -0.11 -1.34 5.41 -26.73 -0.14 -1.48 16 8 C 0.09 1.25 2.19 -67.71 -0.15 1.10 16 9 H 0.05 0.80 7.31 -51.93 -0.38 0.42 16 10 N -0.68 -10.82 6.02 -98.56 -0.59 -11.41 16 11 C 0.09 1.58 3.01 -66.60 -0.20 1.38 16 12 H 0.06 1.18 7.17 -51.93 -0.37 0.81 16 13 C -0.15 -2.97 6.34 -25.62 -0.16 -3.13 16 14 C -0.10 -2.37 5.76 -25.07 -0.14 -2.51 16 15 C 0.05 1.21 2.73 -89.78 -0.24 0.97 16 16 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 17 C -0.51 -14.31 8.49 -34.44 -0.29 -14.60 16 18 H 0.05 1.51 7.77 -52.49 -0.41 1.11 16 19 C 0.06 1.73 5.36 -17.82 -0.10 1.63 16 20 N -0.89 -26.22 12.43 55.43 0.69 -25.53 16 21 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 C -0.10 -2.19 5.95 -25.07 -0.15 -2.34 16 26 C -0.12 -1.33 4.94 -26.73 -0.13 -1.46 16 27 H 0.04 0.28 8.08 -51.93 -0.42 -0.14 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.04 0.27 7.87 -51.93 -0.41 -0.14 16 30 H 0.07 0.61 8.14 -51.92 -0.42 0.18 16 31 H 0.06 0.49 7.87 -51.93 -0.41 0.08 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.79 7.68 -51.93 -0.40 0.39 16 34 H 0.06 0.86 7.47 -51.93 -0.39 0.47 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.34 5.28 7.77 -39.29 -0.31 4.98 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.04 0.79 7.56 -51.93 -0.39 0.39 16 39 H 0.04 1.11 8.04 -51.93 -0.42 0.69 16 40 H 0.06 1.59 7.64 -51.93 -0.40 1.20 16 41 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.06 1.33 7.94 -51.93 -0.41 0.92 16 44 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.07 0.77 8.12 -51.93 -0.42 0.34 16 LS Contribution 343.14 15.07 5.17 5.17 Total: -1.00 -29.16 343.14 -9.53 -38.68 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -8.45 Total: 2.15 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: -1.00 Total: -21.07 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.10 Total: -36.94 kcal Atomic # 8 Polarization: -4.37 SS G_CDS: -0.32 Total: -4.69 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.16 -9.53 -38.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590656373.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.485 kcal (2) G-P(sol) polarization free energy of solvation -29.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds