Wall clock time and date at job start Mon Mar 30 2020 08:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 113.99999 * 2 1 4 4 H 1.08999 * 109.46823 * 330.00160 * 3 2 1 5 5 C 1.52995 * 109.46776 * 89.99994 * 3 2 1 6 6 C 1.52998 * 109.47173 * 60.00323 * 5 3 2 7 7 C 1.53000 * 109.47400 * 59.99916 * 6 5 3 8 8 C 1.53003 * 109.46586 * 300.00161 * 7 6 5 9 9 H 1.08999 * 109.46820 * 299.99396 * 8 7 6 10 10 N 1.46911 * 109.46786 * 180.02562 * 8 7 6 11 11 C 1.46898 * 110.99854 * 84.99915 * 10 8 7 12 12 H 1.09001 * 110.05622 * 326.41047 * 11 10 8 13 13 C 1.53869 * 110.03268 * 87.83327 * 11 10 8 14 14 C 1.54267 * 106.59932 * 119.28147 * 13 11 10 15 15 C 1.54891 * 104.19707 * 23.60970 * 14 13 11 16 16 H 1.09005 * 110.91507 * 80.43868 * 15 14 13 17 17 C 1.50697 * 110.76075 * 203.74561 * 15 14 13 18 18 H 1.07991 * 120.00449 * 113.04945 * 17 15 14 19 19 C 1.37885 * 119.99686 * 293.32777 * 17 15 14 20 20 N 1.31516 * 119.99913 * 359.72095 * 19 17 15 21 21 Si 1.86798 * 119.99766 * 179.72528 * 19 17 15 22 22 H 1.48498 * 109.47416 * 59.99812 * 21 19 17 23 23 H 1.48508 * 109.46609 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46903 * 299.99397 * 21 19 17 25 25 C 1.54269 * 110.03046 * 204.99988 * 11 10 8 26 26 C 1.52999 * 109.47375 * 60.00225 * 8 7 6 27 27 H 1.08998 * 109.47534 * 60.00271 * 1 2 3 28 28 H 1.09007 * 109.46866 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47534 * 299.99795 * 1 2 3 30 30 H 1.09008 * 109.46870 * 179.97438 * 5 3 2 31 31 H 1.09002 * 109.47740 * 299.99803 * 5 3 2 32 32 H 1.09007 * 109.47237 * 179.97438 * 6 5 3 33 33 H 1.08999 * 109.47023 * 299.99854 * 6 5 3 34 34 H 1.08999 * 109.47447 * 179.97438 * 7 6 5 35 35 H 1.08999 * 109.47048 * 59.99418 * 7 6 5 36 36 H 1.00900 * 110.99556 * 208.95254 * 10 8 7 37 37 H 1.09003 * 110.03087 * 238.56564 * 13 11 10 38 38 H 1.08999 * 110.03482 * 359.97438 * 13 11 10 39 39 H 1.09001 * 110.48713 * 264.93393 * 14 13 11 40 40 H 1.09007 * 110.48904 * 142.28257 * 14 13 11 41 41 H 0.97000 * 119.99651 * 180.02562 * 20 19 17 42 42 H 1.08997 * 110.48714 * 98.42301 * 25 11 10 43 43 H 1.09004 * 110.48291 * 335.78219 * 25 11 10 44 44 H 1.08999 * 109.47351 * 59.99540 * 26 8 7 45 45 H 1.08999 * 109.46902 * 180.02562 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 -0.5138 5 6 2.2176 1.7713 1.4425 6 6 3.1514 0.7973 2.1637 7 6 4.5001 0.7551 1.4425 8 6 4.2926 0.2893 0.0000 9 1 3.8493 -0.7065 0.0000 10 7 5.5877 0.2482 -0.6924 11 6 6.2759 -1.0261 -0.4464 12 1 6.0499 -1.3852 0.5576 13 6 5.8413 -2.0699 -1.4900 14 6 7.1152 -2.4864 -2.2538 15 6 8.2691 -2.1650 -1.2717 16 1 8.3758 -2.9526 -0.5257 17 6 9.5627 -1.9588 -2.0166 18 1 10.0246 -0.9828 -2.0368 19 6 10.1537 -3.0150 -2.6773 20 7 9.5912 -4.2035 -2.6527 21 14 11.7533 -2.7576 -3.6071 22 1 12.8030 -2.2902 -2.6664 23 1 12.1775 -4.0390 -4.2262 24 1 11.5504 -1.7389 -4.6684 25 6 7.7989 -0.8447 -0.6124 26 6 3.3588 1.2633 -0.7213 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 2.6614 2.7669 1.4425 31 1 1.2568 1.8014 1.9564 32 1 3.2996 1.1294 3.1913 33 1 2.7081 -0.1985 2.1636 34 1 5.1656 0.0616 1.9565 35 1 4.9434 1.7509 1.4424 36 1 5.4743 0.4130 -1.6814 37 1 5.4043 -2.9357 -0.9925 38 1 5.1193 -1.6311 -2.1788 39 1 7.2194 -1.9031 -3.1687 40 1 7.0929 -3.5525 -2.4802 41 1 10.0072 -4.9466 -3.1172 42 1 8.2754 -0.7124 0.3590 43 1 8.0134 0.0037 -1.2622 44 1 3.8022 2.2591 -0.7212 45 1 3.2107 0.9312 -1.7488 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590656373.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:30:38 Heat of formation + Delta-G solvation = -93.207225 kcal Electronic energy + Delta-G solvation = -21260.726728 eV Core-core repulsion = 18275.814374 eV Total energy + Delta-G solvation = -2984.912354 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.60078 -39.22380 -37.16503 -35.07401 -33.63891 -31.31818 -30.14558 -29.62908 -27.65096 -27.22025 -25.41431 -23.54302 -22.61648 -21.13159 -20.71092 -20.38258 -18.39212 -17.46046 -16.82324 -16.61072 -16.42887 -16.26859 -15.83428 -15.36989 -15.14837 -14.69623 -14.36531 -14.09224 -13.82950 -13.44330 -13.29040 -13.17940 -12.95639 -12.82806 -12.71803 -12.60942 -12.35315 -12.17404 -12.04868 -11.92882 -11.54119 -11.51407 -11.39453 -11.33577 -11.02451 -10.81953 -10.79413 -10.44601 -10.35999 -9.19346 -8.09949 -6.19593 1.41949 1.43796 1.51350 2.45019 2.94021 3.19675 3.23919 3.77329 3.90609 4.01037 4.08388 4.15010 4.26299 4.31233 4.33974 4.47770 4.50974 4.59385 4.64160 4.69285 4.74212 4.75352 4.84509 4.86783 5.01875 5.04506 5.05917 5.06654 5.15694 5.19634 5.23594 5.29383 5.34728 5.38780 5.43804 5.46190 5.58697 5.65984 5.91648 6.01018 6.31727 6.37568 6.42283 6.61598 6.91294 7.47595 8.99027 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.039967 B = 0.003670 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.412203 B = 7627.833428 C = 7896.160080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.406 6.406 3 C 0.090 3.910 4 H 0.078 0.922 5 C -0.135 4.135 6 C -0.109 4.109 7 C -0.103 4.103 8 C 0.094 3.906 9 H 0.031 0.969 10 N -0.679 5.679 11 C 0.100 3.900 12 H 0.066 0.934 13 C -0.139 4.139 14 C -0.091 4.091 15 C 0.037 3.963 16 H -0.003 1.003 17 C -0.530 4.530 18 H 0.053 0.947 19 C 0.010 3.990 20 N -0.923 5.923 21 Si 0.954 3.046 22 H -0.271 1.271 23 H -0.285 1.285 24 H -0.270 1.270 25 C -0.091 4.091 26 C -0.114 4.114 27 H 0.049 0.951 28 H 0.086 0.914 29 H 0.051 0.949 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.043 0.957 35 H 0.068 0.932 36 H 0.341 0.659 37 H 0.050 0.950 38 H 0.062 0.938 39 H 0.034 0.966 40 H 0.031 0.969 41 H 0.259 0.741 42 H 0.045 0.955 43 H 0.057 0.943 44 H 0.093 0.907 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.919 12.604 6.521 23.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C 0.032 3.968 4 H 0.096 0.904 5 C -0.173 4.173 6 C -0.148 4.148 7 C -0.141 4.141 8 C -0.016 4.016 9 H 0.049 0.951 10 N -0.309 5.309 11 C -0.010 4.010 12 H 0.085 0.915 13 C -0.179 4.179 14 C -0.129 4.129 15 C 0.019 3.981 16 H 0.016 0.984 17 C -0.568 4.568 18 H 0.071 0.929 19 C -0.189 4.189 20 N -0.562 5.562 21 Si 0.780 3.220 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.195 1.195 25 C -0.129 4.129 26 C -0.151 4.151 27 H 0.067 0.933 28 H 0.104 0.896 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.160 0.840 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.111 0.889 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.462 12.606 6.961 23.413 hybrid contribution 0.363 -1.011 -1.147 1.572 sum -18.098 11.595 5.813 22.266 Atomic orbital electron populations 1.22905 0.80267 1.03219 1.00674 1.87951 1.20721 1.28679 1.95164 1.22177 0.94072 0.84555 0.95990 0.90364 1.22007 1.00218 0.99669 0.95399 1.21380 0.94674 0.99760 0.98939 1.21495 0.97032 1.01390 0.94213 1.21398 0.87849 0.97662 0.94654 0.95132 1.60708 1.21344 1.32910 1.15984 1.22034 0.94072 0.87744 0.97192 0.91533 1.22829 0.97547 0.99234 0.98243 1.22050 0.94497 0.98522 0.97846 1.19576 0.92998 0.92409 0.93165 0.98433 1.21496 1.07915 0.95461 1.31950 0.92858 1.25802 1.00655 0.94970 0.97437 1.70096 1.40849 1.01093 1.44165 0.85673 0.80076 0.77285 0.79001 1.19576 1.21072 1.19508 1.22261 0.93547 0.98123 0.98973 1.21806 0.93923 1.00760 0.98650 0.93267 0.89571 0.93075 0.89789 0.90894 0.91109 0.92927 0.93803 0.91346 0.84011 0.93153 0.91915 0.94697 0.94986 0.93185 0.93598 0.92426 0.88880 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.82 113.37 1.23 1.59 16 2 O -0.41 -8.62 9.00 -148.98 -1.34 -9.97 16 3 C 0.09 1.58 2.92 30.59 0.09 1.67 16 4 H 0.08 1.07 7.79 -2.39 -0.02 1.05 16 5 C -0.14 -2.11 5.63 30.59 0.17 -1.93 16 6 C -0.11 -2.14 5.78 30.59 0.18 -1.97 16 7 C -0.10 -2.47 5.41 30.60 0.17 -2.31 16 8 C 0.09 2.44 2.19 44.91 0.10 2.54 16 9 H 0.03 0.94 7.31 -2.39 -0.02 0.92 16 10 N -0.68 -20.67 6.02 -465.75 -2.80 -23.48 16 11 C 0.10 3.65 3.01 45.64 0.14 3.79 16 12 H 0.07 2.43 7.17 -2.39 -0.02 2.42 16 13 C -0.14 -5.42 6.34 31.32 0.20 -5.22 16 14 C -0.09 -4.43 5.76 31.67 0.18 -4.25 16 15 C 0.04 1.96 2.73 -10.25 -0.03 1.93 16 16 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 17 C -0.53 -30.33 8.49 25.60 0.22 -30.11 16 18 H 0.05 2.98 7.77 -2.92 -0.02 2.96 16 19 C 0.01 0.56 5.36 84.66 0.45 1.01 16 20 N -0.92 -55.55 12.43 21.45 0.27 -55.28 16 21 Si 0.95 44.83 29.54 68.60 2.03 46.86 16 22 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 23 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 24 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 25 C -0.09 -3.93 5.95 31.67 0.19 -3.74 16 26 C -0.11 -2.33 4.94 30.59 0.15 -2.18 16 27 H 0.05 0.59 8.08 -2.39 -0.02 0.57 16 28 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 29 H 0.05 0.59 7.87 -2.39 -0.02 0.57 16 30 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.07 0.96 7.87 -2.39 -0.02 0.94 16 32 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.05 1.18 7.68 -2.39 -0.02 1.16 16 34 H 0.04 1.19 7.47 -2.39 -0.02 1.17 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.34 10.11 7.77 -89.69 -0.70 9.41 16 37 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.06 2.20 7.56 -2.39 -0.02 2.18 16 39 H 0.03 1.73 8.04 -2.39 -0.02 1.71 16 40 H 0.03 1.71 7.64 -2.38 -0.02 1.69 16 41 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 42 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.06 2.51 7.94 -2.38 -0.02 2.49 16 44 H 0.09 1.70 8.14 -2.39 -0.02 1.69 16 45 H 0.06 1.33 8.12 -2.39 -0.02 1.31 16 Total: -1.00 -63.44 343.14 1.81 -61.63 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.24 Total: 19.40 kcal Atomic # 6 Polarization: -42.60 SS G_CDS: 3.43 Total: -39.17 kcal Atomic # 7 Polarization: -76.22 SS G_CDS: -2.54 Total: -78.76 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -1.34 Total: -9.97 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -63.44 1.81 -61.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590656373.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.576 kcal (2) G-P(sol) polarization free energy of solvation -63.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds