Wall clock time and date at job start Mon Mar 30 2020 08:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42906 * 113.99601 * 2 1 4 4 C 1.52997 * 109.46635 * 180.02562 * 3 2 1 5 5 N 1.46893 * 109.47517 * 68.24587 * 4 3 2 6 6 C 1.46901 * 110.99878 * 296.33401 * 5 4 3 7 7 C 1.50701 * 109.47005 * 300.41841 * 6 5 4 8 8 H 1.08000 * 120.00352 * 4.64135 * 7 6 5 9 9 C 1.37883 * 120.00158 * 184.63539 * 7 6 5 10 10 N 1.31513 * 119.99711 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00147 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47088 * 89.99791 * 11 9 7 13 13 H 1.48502 * 109.47314 * 210.00048 * 11 9 7 14 14 H 1.48495 * 109.47194 * 330.00151 * 11 9 7 15 15 C 1.46895 * 111.00279 * 60.28738 * 5 4 3 16 16 C 1.52998 * 109.47376 * 78.02027 * 15 5 4 17 17 C 1.56123 * 116.03482 * 292.56876 * 16 15 5 18 18 C 1.54580 * 104.67265 * 200.01505 * 17 16 15 19 19 C 1.55926 * 104.64576 * 359.97438 * 18 17 16 20 20 C 1.55918 * 104.49474 * 289.72002 * 19 18 17 21 21 C 1.54718 * 104.64233 * 70.32648 * 20 19 18 22 22 C 1.56948 * 116.22471 * 174.65586 * 16 15 5 23 23 H 1.09000 * 109.47062 * 300.00040 * 1 2 3 24 24 H 1.09004 * 109.47264 * 59.99784 * 1 2 3 25 25 H 1.08994 * 109.47213 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46759 * 60.00183 * 3 2 1 27 27 H 1.08995 * 109.47373 * 299.99690 * 3 2 1 28 28 H 1.09006 * 109.47275 * 308.24066 * 4 3 2 29 29 H 1.09001 * 109.47246 * 188.24825 * 4 3 2 30 30 H 1.08997 * 109.47312 * 60.41560 * 6 5 4 31 31 H 1.09005 * 109.47610 * 180.42366 * 6 5 4 32 32 H 0.97002 * 119.99835 * 180.02562 * 10 9 7 33 33 H 1.09000 * 109.47030 * 318.01789 * 15 5 4 34 34 H 1.09008 * 109.47545 * 198.02520 * 15 5 4 35 35 H 1.08996 * 110.41005 * 81.19946 * 17 16 15 36 36 H 1.08999 * 110.46178 * 318.85069 * 17 16 15 37 37 H 1.09004 * 110.40088 * 241.17991 * 18 17 16 38 38 H 1.09000 * 110.49860 * 118.81548 * 18 17 16 39 39 H 1.08997 * 115.91961 * 160.03431 * 19 18 17 40 40 H 1.09005 * 110.40144 * 189.06526 * 20 19 18 41 41 H 1.08995 * 110.40748 * 311.48405 * 20 19 18 42 42 H 1.09002 * 110.44464 * 241.18496 * 21 20 19 43 43 H 1.09002 * 110.46741 * 118.81654 * 21 20 19 44 44 H 1.08994 * 112.02976 * 62.87409 * 22 16 15 45 45 H 1.09002 * 112.02422 * 296.42635 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9825 0.6346 -1.2872 6 6 3.4750 -0.7302 -1.4810 7 6 3.9746 -1.6148 -0.3679 8 1 4.5432 -1.1895 0.4459 9 6 3.7057 -2.9670 -0.3883 10 7 3.0137 -3.4849 -1.3794 11 14 4.3244 -4.0632 0.9919 12 1 3.3029 -4.1286 2.0678 13 1 4.5762 -5.4285 0.4646 14 1 5.5859 -3.5040 1.5405 15 6 3.5844 1.5072 -2.3998 16 6 4.5325 2.7058 -2.4724 17 6 4.4533 3.7151 -1.2839 18 6 5.0801 5.0170 -1.8333 19 6 5.4799 4.6733 -3.3008 20 6 6.6797 3.6879 -3.1578 21 6 6.0522 2.3845 -2.6091 22 6 4.3308 3.6770 -3.6887 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6885 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8477 0.5218 0.8063 29 1 3.9780 2.1699 0.1468 30 1 2.3851 -0.7172 -1.4733 31 1 3.8270 -1.1165 -2.4377 32 1 2.8242 -4.4361 -1.3936 33 1 2.5654 1.8592 -2.2388 34 1 3.6324 0.9488 -3.3347 35 1 5.0269 3.3467 -0.4334 36 1 3.4157 3.8848 -0.9966 37 1 5.9619 5.2885 -1.2529 38 1 4.3515 5.8275 -1.8179 39 1 5.6251 5.5239 -3.9667 40 1 7.1408 3.5072 -4.1289 41 1 7.4137 4.0822 -2.4552 42 1 6.4773 2.1374 -1.6363 43 1 6.2054 1.5634 -3.3094 44 1 3.3517 4.1556 -3.6717 45 1 4.5219 3.1837 -4.6417 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590698200.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:25:24 Heat of formation + Delta-G solvation = -30.741210 kcal Electronic energy + Delta-G solvation = -22224.069324 eV Core-core repulsion = 19241.865699 eV Total energy + Delta-G solvation = -2982.203624 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.16284 -37.86281 -35.52704 -32.41387 -30.35684 -30.04135 -28.80930 -27.61273 -26.44355 -25.65227 -23.82531 -22.48436 -21.83416 -19.66702 -19.43308 -18.02065 -16.22142 -15.97216 -15.76320 -15.22299 -15.01032 -14.85975 -14.45566 -14.16581 -13.68282 -13.42610 -12.40544 -12.34903 -12.16407 -11.87232 -11.79410 -11.49057 -11.35426 -11.06193 -10.99775 -10.93805 -10.84808 -10.65714 -10.62988 -10.55888 -10.49888 -10.38677 -10.01934 -9.83626 -9.57229 -9.47610 -8.88269 -8.84312 -8.19842 -6.91511 -5.80320 -3.75812 3.43375 3.48754 3.52555 4.49124 4.57715 4.65310 4.66847 4.71963 5.14189 5.36488 5.38285 5.49027 5.55200 5.58444 5.59210 5.63307 5.68792 5.71220 5.78135 5.84347 5.90498 5.92958 5.98427 6.03586 6.10333 6.20239 6.21453 6.24627 6.25885 6.30008 6.38611 6.39461 6.50747 6.62349 6.74759 6.78612 6.89205 7.50244 7.82466 7.94902 7.98966 8.28648 8.46361 8.80197 9.27294 9.83694 11.31814 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021744 B = 0.005879 C = 0.005167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.403524 B = 4761.928354 C = 5417.879259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.338 6.338 3 C 0.023 3.977 4 C 0.053 3.947 5 N -0.526 5.526 6 C 0.183 3.817 7 C -0.480 4.480 8 H 0.056 0.944 9 C 0.055 3.945 10 N -0.902 5.902 11 Si 0.889 3.111 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.276 1.276 15 C 0.076 3.924 16 C -0.057 4.057 17 C -0.115 4.115 18 C -0.120 4.120 19 C -0.106 4.106 20 C -0.121 4.121 21 C -0.098 4.098 22 C -0.121 4.121 23 H 0.026 0.974 24 H 0.027 0.973 25 H 0.081 0.919 26 H 0.032 0.968 27 H 0.040 0.960 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.028 0.972 31 H 0.021 0.979 32 H 0.255 0.745 33 H 0.031 0.969 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.090 0.910 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.403 15.974 -1.768 16.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.255 6.255 3 C -0.056 4.056 4 C -0.076 4.076 5 N -0.248 5.248 6 C 0.059 3.941 7 C -0.519 4.519 8 H 0.074 0.926 9 C -0.144 4.144 10 N -0.543 5.543 11 Si 0.718 3.282 12 H -0.211 1.211 13 H -0.216 1.216 14 H -0.201 1.201 15 C -0.053 4.053 16 C -0.058 4.058 17 C -0.152 4.152 18 C -0.157 4.157 19 C -0.125 4.125 20 C -0.159 4.159 21 C -0.136 4.136 22 C -0.159 4.159 23 H 0.045 0.955 24 H 0.046 0.954 25 H 0.099 0.901 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.107 0.893 29 H 0.095 0.905 30 H 0.045 0.955 31 H 0.039 0.961 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.108 0.892 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.990 15.580 -1.810 15.716 hybrid contribution -0.912 -0.416 0.759 1.258 sum 0.078 15.163 -1.051 15.200 Atomic orbital electron populations 1.22659 0.84016 1.02161 0.98122 1.88552 1.17031 1.25533 1.94406 1.23338 0.97831 0.86051 0.98357 1.22465 0.89401 1.00293 0.95439 1.62227 1.59130 1.04097 0.99376 1.20034 0.95560 0.81627 0.96892 1.21029 1.32201 0.91890 1.06775 0.92611 1.24850 0.95817 0.97977 0.95785 1.69958 1.40811 1.12136 1.31442 0.86653 0.79001 0.79995 0.82587 1.21085 1.21640 1.20137 1.21672 0.94680 0.92757 0.96151 1.22841 0.95651 0.93585 0.93700 1.22799 0.99913 0.94421 0.98093 1.22632 0.99892 0.97468 0.95744 1.23505 0.95878 0.96937 0.96152 1.22680 0.96774 0.96158 1.00280 1.22397 0.94095 0.95736 1.01342 1.23574 0.97620 0.96566 0.98141 0.95527 0.95402 0.90057 0.94961 0.94232 0.89335 0.90538 0.95462 0.96107 0.93493 0.95069 0.91518 0.91116 0.92635 0.92204 0.92603 0.89230 0.92510 0.92342 0.91339 0.91994 0.91958 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.34 -7.27 7.15 -35.23 -0.25 -7.52 16 3 C 0.02 0.41 5.80 37.16 0.22 0.63 16 4 C 0.05 1.00 5.41 -3.83 -0.02 0.98 16 5 N -0.53 -11.02 4.46 -236.08 -1.05 -12.07 16 6 C 0.18 4.76 4.12 -4.97 -0.02 4.74 16 7 C -0.48 -13.58 8.18 -34.44 -0.28 -13.86 16 8 H 0.06 1.57 6.48 -52.49 -0.34 1.23 16 9 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 10 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 11 Si 0.89 22.37 29.54 -169.99 -5.02 17.35 16 12 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 15 C 0.08 1.35 4.86 -3.83 -0.02 1.33 16 16 C -0.06 -0.83 1.17 -149.14 -0.17 -1.00 16 17 C -0.11 -1.50 4.02 -24.23 -0.10 -1.60 16 18 C -0.12 -1.34 6.21 -24.34 -0.15 -1.49 16 19 C -0.11 -1.19 5.19 -85.36 -0.44 -1.63 16 20 C -0.12 -1.45 6.21 -24.27 -0.15 -1.61 16 21 C -0.10 -1.45 5.69 -24.26 -0.14 -1.58 16 22 C -0.12 -1.51 6.11 -22.45 -0.14 -1.65 16 23 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.04 0.68 5.73 -51.93 -0.30 0.38 16 28 H 0.09 1.91 6.24 -51.93 -0.32 1.58 16 29 H 0.08 1.24 4.31 -51.93 -0.22 1.02 16 30 H 0.03 0.77 5.30 -51.93 -0.28 0.49 16 31 H 0.02 0.60 7.98 -51.93 -0.41 0.19 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.03 0.55 5.47 -51.93 -0.28 0.27 16 34 H 0.07 1.26 7.80 -51.92 -0.40 0.85 16 35 H 0.07 0.98 6.34 -51.93 -0.33 0.65 16 36 H 0.05 0.72 8.05 -51.93 -0.42 0.30 16 37 H 0.06 0.64 7.83 -51.93 -0.41 0.23 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.67 7.83 -51.93 -0.41 0.26 16 42 H 0.07 1.09 7.84 -51.93 -0.41 0.69 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 332.12 15.07 5.01 5.01 Total: -1.00 -30.29 332.12 -8.88 -39.17 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -7.89 Total: -1.63 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -0.40 Total: -13.64 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: -0.32 Total: -38.73 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -0.25 Total: -7.52 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.29 -8.88 -39.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590698200.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.432 kcal (2) G-P(sol) polarization free energy of solvation -30.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds