Wall clock time and date at job start Mon Mar 30 2020 08:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42906 * 113.99601 * 2 1 4 4 C 1.52997 * 109.46635 * 180.02562 * 3 2 1 5 5 N 1.46893 * 109.47517 * 68.24587 * 4 3 2 6 6 C 1.46901 * 110.99878 * 296.33401 * 5 4 3 7 7 C 1.50701 * 109.47005 * 300.41841 * 6 5 4 8 8 H 1.08000 * 120.00352 * 4.64135 * 7 6 5 9 9 C 1.37883 * 120.00158 * 184.63539 * 7 6 5 10 10 N 1.31513 * 119.99711 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00147 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47088 * 89.99791 * 11 9 7 13 13 H 1.48502 * 109.47314 * 210.00048 * 11 9 7 14 14 H 1.48495 * 109.47194 * 330.00151 * 11 9 7 15 15 C 1.46895 * 111.00279 * 60.28738 * 5 4 3 16 16 C 1.52998 * 109.47376 * 78.02027 * 15 5 4 17 17 C 1.56123 * 116.03482 * 292.56876 * 16 15 5 18 18 C 1.54580 * 104.67265 * 200.01505 * 17 16 15 19 19 C 1.55926 * 104.64576 * 359.97438 * 18 17 16 20 20 C 1.55918 * 104.49474 * 289.72002 * 19 18 17 21 21 C 1.54718 * 104.64233 * 70.32648 * 20 19 18 22 22 C 1.56948 * 116.22471 * 174.65586 * 16 15 5 23 23 H 1.09000 * 109.47062 * 300.00040 * 1 2 3 24 24 H 1.09004 * 109.47264 * 59.99784 * 1 2 3 25 25 H 1.08994 * 109.47213 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46759 * 60.00183 * 3 2 1 27 27 H 1.08995 * 109.47373 * 299.99690 * 3 2 1 28 28 H 1.09006 * 109.47275 * 308.24066 * 4 3 2 29 29 H 1.09001 * 109.47246 * 188.24825 * 4 3 2 30 30 H 1.08997 * 109.47312 * 60.41560 * 6 5 4 31 31 H 1.09005 * 109.47610 * 180.42366 * 6 5 4 32 32 H 0.97002 * 119.99835 * 180.02562 * 10 9 7 33 33 H 1.09000 * 109.47030 * 318.01789 * 15 5 4 34 34 H 1.09008 * 109.47545 * 198.02520 * 15 5 4 35 35 H 1.08996 * 110.41005 * 81.19946 * 17 16 15 36 36 H 1.08999 * 110.46178 * 318.85069 * 17 16 15 37 37 H 1.09004 * 110.40088 * 241.17991 * 18 17 16 38 38 H 1.09000 * 110.49860 * 118.81548 * 18 17 16 39 39 H 1.08997 * 115.91961 * 160.03431 * 19 18 17 40 40 H 1.09005 * 110.40144 * 189.06526 * 20 19 18 41 41 H 1.08995 * 110.40748 * 311.48405 * 20 19 18 42 42 H 1.09002 * 110.44464 * 241.18496 * 21 20 19 43 43 H 1.09002 * 110.46741 * 118.81654 * 21 20 19 44 44 H 1.08994 * 112.02976 * 62.87409 * 22 16 15 45 45 H 1.09002 * 112.02422 * 296.42635 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9825 0.6346 -1.2872 6 6 3.4750 -0.7302 -1.4810 7 6 3.9746 -1.6148 -0.3679 8 1 4.5432 -1.1895 0.4459 9 6 3.7057 -2.9670 -0.3883 10 7 3.0137 -3.4849 -1.3794 11 14 4.3244 -4.0632 0.9919 12 1 3.3029 -4.1286 2.0678 13 1 4.5762 -5.4285 0.4646 14 1 5.5859 -3.5040 1.5405 15 6 3.5844 1.5072 -2.3998 16 6 4.5325 2.7058 -2.4724 17 6 4.4533 3.7151 -1.2839 18 6 5.0801 5.0170 -1.8333 19 6 5.4799 4.6733 -3.3008 20 6 6.6797 3.6879 -3.1578 21 6 6.0522 2.3845 -2.6091 22 6 4.3308 3.6770 -3.6887 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6885 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8477 0.5218 0.8063 29 1 3.9780 2.1699 0.1468 30 1 2.3851 -0.7172 -1.4733 31 1 3.8270 -1.1165 -2.4377 32 1 2.8242 -4.4361 -1.3936 33 1 2.5654 1.8592 -2.2388 34 1 3.6324 0.9488 -3.3347 35 1 5.0269 3.3467 -0.4334 36 1 3.4157 3.8848 -0.9966 37 1 5.9619 5.2885 -1.2529 38 1 4.3515 5.8275 -1.8179 39 1 5.6251 5.5239 -3.9667 40 1 7.1408 3.5072 -4.1289 41 1 7.4137 4.0822 -2.4552 42 1 6.4773 2.1374 -1.6363 43 1 6.2054 1.5634 -3.3094 44 1 3.3517 4.1556 -3.6717 45 1 4.5219 3.1837 -4.6417 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590698200.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:25:23 Heat of formation + Delta-G solvation = -49.083409 kcal Electronic energy + Delta-G solvation = -22224.864701 eV Core-core repulsion = 19241.865699 eV Total energy + Delta-G solvation = -2982.999001 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.28333 -39.37993 -37.13886 -34.57093 -31.50047 -31.28286 -30.44068 -28.67766 -28.19037 -27.09282 -25.37998 -24.30921 -22.91094 -21.29870 -20.43327 -19.22481 -18.23801 -17.51945 -17.29129 -16.69953 -16.27876 -16.10262 -15.89221 -15.70735 -15.17749 -15.03752 -14.19962 -13.56487 -13.35045 -13.31340 -13.17136 -13.05262 -12.92054 -12.72824 -12.64497 -12.50566 -12.25249 -12.09585 -11.95163 -11.77488 -11.70614 -11.58803 -11.53931 -11.33213 -11.10761 -10.76932 -10.60669 -10.55424 -10.20766 -8.65231 -8.04090 -6.06528 1.41443 1.42811 1.52822 2.48601 3.07430 3.29323 3.39594 3.61904 3.69986 3.84335 4.16594 4.23397 4.30132 4.38521 4.43817 4.48361 4.53427 4.54224 4.57408 4.63994 4.66278 4.71120 4.75931 4.85146 4.91160 4.91866 5.00268 5.01504 5.17365 5.22668 5.27204 5.30971 5.34951 5.43162 5.48389 5.52722 5.59188 5.67068 5.74158 5.80136 6.24904 6.50131 6.53286 6.87060 7.07201 7.57521 9.08056 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021744 B = 0.005879 C = 0.005167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.403524 B = 4761.928354 C = 5417.879259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.384 6.384 3 C 0.025 3.975 4 C 0.055 3.945 5 N -0.533 5.533 6 C 0.202 3.798 7 C -0.487 4.487 8 H 0.052 0.948 9 C 0.001 3.999 10 N -0.938 5.938 11 Si 0.955 3.045 12 H -0.278 1.278 13 H -0.286 1.286 14 H -0.269 1.269 15 C 0.080 3.920 16 C -0.065 4.065 17 C -0.113 4.113 18 C -0.114 4.114 19 C -0.094 4.094 20 C -0.116 4.116 21 C -0.100 4.100 22 C -0.118 4.118 23 H 0.054 0.946 24 H 0.041 0.959 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.109 0.891 30 H 0.012 0.988 31 H -0.020 1.020 32 H 0.256 0.744 33 H 0.037 0.963 34 H 0.043 0.957 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.116 0.884 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.050 0.950 43 H 0.036 0.964 44 H 0.073 0.927 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.597 18.619 -0.971 18.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.303 6.303 3 C -0.053 4.053 4 C -0.073 4.073 5 N -0.255 5.255 6 C 0.076 3.924 7 C -0.526 4.526 8 H 0.070 0.930 9 C -0.195 4.195 10 N -0.580 5.580 11 Si 0.781 3.219 12 H -0.204 1.204 13 H -0.212 1.212 14 H -0.193 1.193 15 C -0.048 4.048 16 C -0.066 4.066 17 C -0.150 4.150 18 C -0.151 4.151 19 C -0.112 4.112 20 C -0.154 4.154 21 C -0.138 4.138 22 C -0.156 4.156 23 H 0.073 0.927 24 H 0.059 0.941 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.126 0.874 30 H 0.029 0.971 31 H -0.002 1.002 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.134 0.866 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.069 0.931 43 H 0.055 0.945 44 H 0.091 0.909 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.186 18.253 -1.007 18.319 hybrid contribution -0.993 -1.227 0.489 1.653 sum 0.194 17.026 -0.517 17.035 Atomic orbital electron populations 1.22757 0.82098 1.02143 1.00079 1.88457 1.19381 1.27693 1.94773 1.23362 0.96628 0.85209 1.00086 1.22484 0.90801 1.00879 0.93165 1.62092 1.59432 1.02604 1.01406 1.19606 0.94317 0.84325 0.94128 1.21305 1.31678 0.92537 1.07039 0.92952 1.25680 0.96106 0.99547 0.98195 1.70095 1.42140 1.12423 1.33335 0.85604 0.78691 0.77990 0.79587 1.20415 1.21225 1.19316 1.21664 0.96097 0.93205 0.93868 1.22745 0.94520 0.92986 0.96322 1.22754 1.00369 0.94988 0.96932 1.22609 1.00559 0.96508 0.95474 1.23548 0.94113 0.96915 0.96639 1.22645 0.97373 0.94692 1.00662 1.22370 0.94730 0.96807 0.99884 1.23566 0.99019 0.96264 0.96717 0.92740 0.94091 0.91201 0.92125 0.93236 0.92212 0.87380 0.97066 1.00246 0.93492 0.94470 0.93791 0.92121 0.92096 0.91341 0.90831 0.86592 0.91869 0.91301 0.93139 0.94483 0.90862 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 11.01 113.37 1.25 2.12 16 2 O -0.38 -16.64 7.15 -148.98 -1.07 -17.70 16 3 C 0.02 0.88 5.80 71.98 0.42 1.29 16 4 C 0.05 2.08 5.41 86.30 0.47 2.55 16 5 N -0.53 -23.05 4.46 -900.81 -4.01 -27.07 16 6 C 0.20 11.03 4.12 85.56 0.35 11.39 16 7 C -0.49 -28.46 8.18 25.60 0.21 -28.25 16 8 H 0.05 3.03 6.48 -2.91 -0.02 3.02 16 9 C 0.00 0.05 5.46 84.66 0.46 0.52 16 10 N -0.94 -58.76 13.29 21.45 0.28 -58.47 16 11 Si 0.95 46.72 29.54 68.60 2.03 48.74 16 12 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 13 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 14 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 15 C 0.08 2.90 4.86 86.30 0.42 3.32 16 16 C -0.07 -1.84 1.17 -48.70 -0.06 -1.90 16 17 C -0.11 -2.68 4.02 32.22 0.13 -2.56 16 18 C -0.11 -2.10 6.21 32.14 0.20 -1.90 16 19 C -0.09 -1.75 5.19 -7.38 -0.04 -1.79 16 20 C -0.12 -2.54 6.21 32.19 0.20 -2.34 16 21 C -0.10 -2.95 5.69 32.19 0.18 -2.77 16 22 C -0.12 -2.68 6.11 33.36 0.20 -2.48 16 23 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 26 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.05 1.63 5.73 -2.39 -0.01 1.62 16 28 H 0.06 2.61 6.24 -2.38 -0.01 2.60 16 29 H 0.11 3.38 4.31 -2.39 -0.01 3.37 16 30 H 0.01 0.69 5.30 -2.39 -0.01 0.67 16 31 H -0.02 -1.27 7.98 -2.38 -0.02 -1.29 16 32 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 33 H 0.04 1.30 5.47 -2.39 -0.01 1.29 16 34 H 0.04 1.76 7.80 -2.38 -0.02 1.74 16 35 H 0.06 1.56 6.34 -2.39 -0.02 1.54 16 36 H 0.06 1.39 8.05 -2.39 -0.02 1.37 16 37 H 0.07 1.18 7.83 -2.38 -0.02 1.17 16 38 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 41 H 0.07 1.38 7.83 -2.39 -0.02 1.36 16 42 H 0.05 1.63 7.84 -2.39 -0.02 1.61 16 43 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -67.75 332.12 2.57 -65.18 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.94 Total: 12.12 kcal Atomic # 6 Polarization: -27.19 SS G_CDS: 4.40 Total: -22.80 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: -3.73 Total: -85.54 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -1.07 Total: -17.70 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.74 kcal Total: -67.75 2.57 -65.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590698200.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.095 kcal (2) G-P(sol) polarization free energy of solvation -67.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds