Wall clock time and date at job start Mon Mar 30 2020 08:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.46954 * 2 1 4 4 C 1.53004 * 110.01534 * 64.03346 * 3 2 1 5 5 C 1.54264 * 110.07574 * 302.61717 * 3 2 1 6 6 C 1.54883 * 104.19833 * 217.08288 * 5 3 2 7 7 C 1.54891 * 102.74979 * 37.94002 * 6 5 3 8 8 C 1.53875 * 110.03422 * 185.42327 * 3 2 1 9 9 H 1.09000 * 110.03201 * 238.61731 * 8 3 2 10 10 N 1.46897 * 110.02957 * 0.05255 * 8 3 2 11 11 C 1.46899 * 110.99810 * 194.94551 * 10 8 3 12 12 C 1.53007 * 109.47330 * 180.02562 * 11 10 8 13 13 C 1.53008 * 109.46580 * 299.99967 * 12 11 10 14 14 C 1.52997 * 109.47254 * 59.99753 * 12 11 10 15 15 C 1.52999 * 109.47343 * 180.02562 * 12 11 10 16 16 C 1.50701 * 109.46950 * 179.97438 * 15 12 11 17 17 H 1.07994 * 120.00024 * 0.02562 * 16 15 12 18 18 C 1.37873 * 119.99590 * 179.97438 * 16 15 12 19 19 N 1.31519 * 120.00499 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99911 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47347 * 60.00045 * 20 18 16 22 22 H 1.48504 * 109.47573 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46971 * 300.00164 * 20 18 16 24 24 H 1.09000 * 109.47329 * 60.00292 * 1 2 3 25 25 H 1.09007 * 109.46855 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47127 * 299.99399 * 1 2 3 27 27 H 1.09005 * 109.46930 * 240.00307 * 2 1 3 28 28 H 1.09000 * 109.47273 * 120.00263 * 2 1 3 29 29 H 1.09003 * 109.47075 * 181.38966 * 4 3 2 30 30 H 1.08997 * 109.47280 * 301.38778 * 4 3 2 31 31 H 1.09004 * 109.47130 * 61.39254 * 4 3 2 32 32 H 1.08996 * 110.48552 * 335.75945 * 5 3 2 33 33 H 1.08998 * 110.49023 * 98.40257 * 5 3 2 34 34 H 1.09001 * 110.75811 * 156.25670 * 6 5 3 35 35 H 1.09000 * 110.75926 * 279.44385 * 6 5 3 36 36 H 1.09001 * 110.48699 * 203.37971 * 7 6 5 37 37 H 1.09000 * 110.48648 * 80.73618 * 7 6 5 38 38 H 1.00901 * 111.00058 * 318.89585 * 10 8 3 39 39 H 1.08999 * 109.47237 * 299.99986 * 11 10 8 40 40 H 1.09003 * 109.47279 * 60.00344 * 11 10 8 41 41 H 1.08993 * 109.47157 * 60.00109 * 13 12 11 42 42 H 1.08998 * 109.46911 * 179.97438 * 13 12 11 43 43 H 1.08997 * 109.47184 * 299.99721 * 13 12 11 44 44 H 1.08994 * 109.47045 * 59.99948 * 14 12 11 45 45 H 1.08998 * 109.47104 * 180.02562 * 14 12 11 46 46 H 1.09003 * 109.47149 * 300.00322 * 14 12 11 47 47 H 1.08999 * 109.47188 * 299.99828 * 15 12 11 48 48 H 1.09011 * 109.47256 * 59.99823 * 15 12 11 49 49 H 0.97001 * 119.99721 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6210 2.1460 1.2925 5 6 1.4801 2.2020 -1.2204 6 6 2.6451 3.1218 -1.6626 7 6 3.8905 2.2292 -1.4354 8 6 3.5725 1.4598 -0.1366 9 1 4.0178 1.9694 0.7178 10 7 4.0851 0.0862 -0.2273 11 6 5.5364 0.0500 -0.0031 12 6 6.0326 -1.3937 -0.1057 13 6 5.3318 -2.2500 0.9511 14 6 5.7179 -1.9434 -1.4983 15 6 7.5441 -1.4314 0.1285 16 6 8.0327 -2.8535 0.0280 17 1 7.3350 -3.6505 -0.1822 18 6 9.3705 -3.1367 0.2035 19 7 10.2203 -2.1660 0.4591 20 14 9.9763 -4.8993 0.0783 21 1 9.6709 -5.4329 -1.2735 22 1 11.4433 -4.9360 0.3057 23 1 9.2960 -5.7305 1.1038 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.9673 3.1794 1.2724 30 1 0.5347 2.1286 1.3800 31 1 2.0627 1.6314 2.1459 32 1 1.2207 1.5052 -2.0173 33 1 0.6122 2.7964 -0.9347 34 1 2.5483 3.3891 -2.7149 35 1 2.6888 4.0160 -1.0409 36 1 4.7817 2.8434 -1.3065 37 1 4.0203 1.5367 -2.2670 38 1 3.6043 -0.5225 0.4181 39 1 6.0357 0.6598 -0.7561 40 1 5.7607 0.4420 0.9890 41 1 4.2550 -2.2232 0.7847 42 1 5.6849 -3.2786 0.8777 43 1 5.5561 -1.8584 1.9432 44 1 6.2170 -1.3333 -2.2511 45 1 6.0710 -2.9720 -1.5713 46 1 4.6410 -1.9166 -1.6647 47 1 8.0437 -0.8212 -0.6240 48 1 7.7680 -1.0399 1.1209 49 1 11.1615 -2.3654 0.5829 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593629200.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:58:03 Heat of formation + Delta-G solvation = -37.480340 kcal Electronic energy + Delta-G solvation = -21979.842858 eV Core-core repulsion = 19133.180098 eV Total energy + Delta-G solvation = -2846.662760 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.81923 -37.09230 -33.68302 -33.18461 -31.90547 -29.44199 -27.52475 -26.65197 -26.32176 -25.94228 -24.20470 -22.92336 -22.20715 -20.27518 -18.23899 -17.65857 -16.20831 -15.83598 -15.48895 -15.01958 -14.53675 -14.41809 -13.88313 -13.77459 -13.58705 -13.03223 -12.76764 -12.64669 -12.22960 -12.11295 -11.97713 -11.88451 -11.58452 -11.28374 -11.21799 -10.99993 -10.93742 -10.81043 -10.77124 -10.56119 -10.48213 -10.42696 -10.40290 -10.24152 -10.14011 -10.03601 -9.62702 -8.96070 -8.78396 -8.28428 -7.95662 -5.93132 -3.93191 3.36542 3.41078 3.43360 4.44079 4.50473 4.53612 4.57401 4.87168 5.16395 5.21630 5.26072 5.34980 5.40630 5.42524 5.53624 5.59619 5.64091 5.69727 5.75471 5.83289 5.85707 5.88972 5.93085 5.99488 6.02967 6.04777 6.09500 6.21723 6.22763 6.32896 6.34418 6.38197 6.48422 6.49922 6.57944 6.71355 6.84762 6.87247 7.25623 7.30407 7.31934 7.54381 7.73491 7.81062 7.90815 8.07433 8.52095 9.12108 9.69394 11.18522 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.032271 B = 0.004056 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.436706 B = 6901.243782 C = 7250.288708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.063 4.063 4 C -0.141 4.141 5 C -0.107 4.107 6 C -0.125 4.125 7 C -0.114 4.114 8 C 0.089 3.911 9 H 0.038 0.962 10 N -0.680 5.680 11 C 0.069 3.931 12 C -0.058 4.058 13 C -0.128 4.128 14 C -0.114 4.114 15 C 0.034 3.966 16 C -0.506 4.506 17 H 0.058 0.942 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.887 3.113 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.278 1.278 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.081 0.919 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.078 0.922 38 H 0.340 0.660 39 H 0.064 0.936 40 H 0.020 0.980 41 H 0.032 0.968 42 H 0.063 0.937 43 H 0.039 0.961 44 H 0.038 0.962 45 H 0.053 0.947 46 H 0.042 0.958 47 H 0.014 0.986 48 H 0.011 0.989 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.629 8.782 -1.277 20.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.063 4.063 4 C -0.199 4.199 5 C -0.145 4.145 6 C -0.163 4.163 7 C -0.152 4.152 8 C -0.021 4.021 9 H 0.056 0.944 10 N -0.315 5.315 11 C -0.060 4.060 12 C -0.058 4.058 13 C -0.186 4.186 14 C -0.172 4.172 15 C -0.003 4.003 16 C -0.545 4.545 17 H 0.076 0.924 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.716 3.284 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.204 1.204 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.100 0.900 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.162 0.838 39 H 0.083 0.917 40 H 0.038 0.962 41 H 0.051 0.949 42 H 0.082 0.918 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.072 0.928 46 H 0.061 0.939 47 H 0.033 0.967 48 H 0.030 0.970 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.379 8.817 -1.907 20.474 hybrid contribution 0.679 -0.727 1.031 1.433 sum -17.700 8.089 -0.877 19.481 Atomic orbital electron populations 1.21864 0.96465 1.01220 1.01499 1.21547 0.94918 0.95580 1.02802 1.21260 0.94373 0.95573 0.95116 1.21968 1.01071 1.00107 0.96710 1.22402 0.97279 0.97755 0.97065 1.22458 0.95413 0.97794 1.00605 1.22409 0.96885 0.97659 0.98224 1.22181 0.93003 0.90212 0.96696 0.94413 1.60904 1.05032 1.07451 1.58066 1.22120 0.86965 0.98536 0.98374 1.20615 0.98530 0.91449 0.95210 1.21765 0.97321 1.01489 0.97994 1.21581 0.99121 1.00732 0.95742 1.19114 0.87630 0.97009 0.96574 1.21208 0.92629 0.93271 1.47372 0.92376 1.25011 0.97143 0.96710 0.95699 1.69962 1.02985 1.31440 1.49428 0.86736 0.77581 0.85600 0.78532 1.20315 1.21460 1.20384 0.92761 0.93094 0.93044 0.90029 0.92440 0.92834 0.92458 0.92954 0.91338 0.92177 0.91868 0.92069 0.92389 0.90292 0.83796 0.91716 0.96220 0.94910 0.91786 0.94210 0.94257 0.92843 0.93900 0.96747 0.97023 0.93148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.38 37.16 0.35 -1.01 16 2 C -0.11 -1.16 3.57 -26.73 -0.10 -1.26 16 3 C -0.06 -0.66 0.68 -153.39 -0.10 -0.76 16 4 C -0.14 -1.35 7.91 37.16 0.29 -1.06 16 5 C -0.11 -1.03 4.76 -25.08 -0.12 -1.15 16 6 C -0.12 -1.24 6.91 -24.74 -0.17 -1.42 16 7 C -0.11 -1.39 5.99 -25.07 -0.15 -1.54 16 8 C 0.09 1.13 2.86 -66.60 -0.19 0.94 16 9 H 0.04 0.52 7.51 -51.93 -0.39 0.13 16 10 N -0.68 -9.86 4.48 -105.54 -0.47 -10.33 16 11 C 0.07 1.21 4.47 -3.82 -0.02 1.20 16 12 C -0.06 -1.16 0.60 -154.50 -0.09 -1.26 16 13 C -0.13 -2.42 7.89 37.16 0.29 -2.13 16 14 C -0.11 -2.24 8.06 37.16 0.30 -1.94 16 15 C 0.03 0.87 4.04 -27.88 -0.11 0.76 16 16 C -0.51 -13.99 7.65 -34.44 -0.26 -14.25 16 17 H 0.06 1.56 5.68 -52.49 -0.30 1.26 16 18 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 19 N -0.90 -27.11 13.29 55.43 0.74 -26.38 16 20 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H 0.05 0.46 6.92 -51.93 -0.36 0.10 16 25 H 0.05 0.44 8.14 -51.92 -0.42 0.01 16 26 H 0.05 0.43 6.55 -51.93 -0.34 0.09 16 27 H 0.08 0.97 7.55 -51.93 -0.39 0.58 16 28 H 0.06 0.63 6.97 -51.93 -0.36 0.27 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.49 6.52 -51.93 -0.34 0.15 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.68 7.47 -51.93 -0.39 0.29 16 33 H 0.06 0.52 7.84 -51.93 -0.41 0.11 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 1.07 8.05 -51.93 -0.42 0.65 16 38 H 0.34 4.79 4.17 -39.29 -0.16 4.63 16 39 H 0.06 1.19 7.76 -51.93 -0.40 0.79 16 40 H 0.02 0.36 8.10 -51.93 -0.42 -0.06 16 41 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 42 H 0.06 1.31 6.62 -51.93 -0.34 0.96 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.05 1.12 6.62 -51.93 -0.34 0.77 16 46 H 0.04 0.75 7.60 -51.93 -0.39 0.35 16 47 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.01 0.32 8.14 -51.92 -0.42 -0.11 16 49 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 357.09 15.07 5.38 5.38 Total: -1.00 -28.51 357.09 -9.02 -37.54 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -9.47 Total: 0.45 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: -0.18 Total: -23.41 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.26 Total: -36.71 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.51 -9.02 -37.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593629200.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.056 kcal (2) G-P(sol) polarization free energy of solvation -28.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds