Wall clock time and date at job start Mon Mar 30 2020 08:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.46954 * 2 1 4 4 C 1.53004 * 110.01534 * 64.03346 * 3 2 1 5 5 C 1.54264 * 110.07574 * 302.61717 * 3 2 1 6 6 C 1.54883 * 104.19833 * 217.08288 * 5 3 2 7 7 C 1.54891 * 102.74979 * 37.94002 * 6 5 3 8 8 C 1.53875 * 110.03422 * 185.42327 * 3 2 1 9 9 H 1.09000 * 110.03201 * 238.61731 * 8 3 2 10 10 N 1.46897 * 110.02957 * 0.05255 * 8 3 2 11 11 C 1.46899 * 110.99810 * 194.94551 * 10 8 3 12 12 C 1.53007 * 109.47330 * 180.02562 * 11 10 8 13 13 C 1.53008 * 109.46580 * 299.99967 * 12 11 10 14 14 C 1.52997 * 109.47254 * 59.99753 * 12 11 10 15 15 C 1.52999 * 109.47343 * 180.02562 * 12 11 10 16 16 C 1.50701 * 109.46950 * 179.97438 * 15 12 11 17 17 H 1.07994 * 120.00024 * 0.02562 * 16 15 12 18 18 C 1.37873 * 119.99590 * 179.97438 * 16 15 12 19 19 N 1.31519 * 120.00499 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99911 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47347 * 60.00045 * 20 18 16 22 22 H 1.48504 * 109.47573 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46971 * 300.00164 * 20 18 16 24 24 H 1.09000 * 109.47329 * 60.00292 * 1 2 3 25 25 H 1.09007 * 109.46855 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47127 * 299.99399 * 1 2 3 27 27 H 1.09005 * 109.46930 * 240.00307 * 2 1 3 28 28 H 1.09000 * 109.47273 * 120.00263 * 2 1 3 29 29 H 1.09003 * 109.47075 * 181.38966 * 4 3 2 30 30 H 1.08997 * 109.47280 * 301.38778 * 4 3 2 31 31 H 1.09004 * 109.47130 * 61.39254 * 4 3 2 32 32 H 1.08996 * 110.48552 * 335.75945 * 5 3 2 33 33 H 1.08998 * 110.49023 * 98.40257 * 5 3 2 34 34 H 1.09001 * 110.75811 * 156.25670 * 6 5 3 35 35 H 1.09000 * 110.75926 * 279.44385 * 6 5 3 36 36 H 1.09001 * 110.48699 * 203.37971 * 7 6 5 37 37 H 1.09000 * 110.48648 * 80.73618 * 7 6 5 38 38 H 1.00901 * 111.00058 * 318.89585 * 10 8 3 39 39 H 1.08999 * 109.47237 * 299.99986 * 11 10 8 40 40 H 1.09003 * 109.47279 * 60.00344 * 11 10 8 41 41 H 1.08993 * 109.47157 * 60.00109 * 13 12 11 42 42 H 1.08998 * 109.46911 * 179.97438 * 13 12 11 43 43 H 1.08997 * 109.47184 * 299.99721 * 13 12 11 44 44 H 1.08994 * 109.47045 * 59.99948 * 14 12 11 45 45 H 1.08998 * 109.47104 * 180.02562 * 14 12 11 46 46 H 1.09003 * 109.47149 * 300.00322 * 14 12 11 47 47 H 1.08999 * 109.47188 * 299.99828 * 15 12 11 48 48 H 1.09011 * 109.47256 * 59.99823 * 15 12 11 49 49 H 0.97001 * 119.99721 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6210 2.1460 1.2925 5 6 1.4801 2.2020 -1.2204 6 6 2.6451 3.1218 -1.6626 7 6 3.8905 2.2292 -1.4354 8 6 3.5725 1.4598 -0.1366 9 1 4.0178 1.9694 0.7178 10 7 4.0851 0.0862 -0.2273 11 6 5.5364 0.0500 -0.0031 12 6 6.0326 -1.3937 -0.1057 13 6 5.3318 -2.2500 0.9511 14 6 5.7179 -1.9434 -1.4983 15 6 7.5441 -1.4314 0.1285 16 6 8.0327 -2.8535 0.0280 17 1 7.3350 -3.6505 -0.1822 18 6 9.3705 -3.1367 0.2035 19 7 10.2203 -2.1660 0.4591 20 14 9.9763 -4.8993 0.0783 21 1 9.6709 -5.4329 -1.2735 22 1 11.4433 -4.9360 0.3057 23 1 9.2960 -5.7305 1.1038 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.9673 3.1794 1.2724 30 1 0.5347 2.1286 1.3800 31 1 2.0627 1.6314 2.1459 32 1 1.2207 1.5052 -2.0173 33 1 0.6122 2.7964 -0.9347 34 1 2.5483 3.3891 -2.7149 35 1 2.6888 4.0160 -1.0409 36 1 4.7817 2.8434 -1.3065 37 1 4.0203 1.5367 -2.2670 38 1 3.6043 -0.5225 0.4181 39 1 6.0357 0.6598 -0.7561 40 1 5.7607 0.4420 0.9890 41 1 4.2550 -2.2232 0.7847 42 1 5.6849 -3.2786 0.8777 43 1 5.5561 -1.8584 1.9432 44 1 6.2170 -1.3333 -2.2511 45 1 6.0710 -2.9720 -1.5713 46 1 4.6410 -1.9166 -1.6647 47 1 8.0437 -0.8212 -0.6240 48 1 7.7680 -1.0399 1.1209 49 1 11.1615 -2.3654 0.5829 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593629200.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:58:03 Heat of formation + Delta-G solvation = -51.333882 kcal Electronic energy + Delta-G solvation = -21980.443593 eV Core-core repulsion = 19133.180098 eV Total energy + Delta-G solvation = -2847.263495 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.79572 -38.66524 -35.14394 -34.29870 -33.62469 -30.21591 -29.20673 -28.10751 -27.90812 -27.03172 -25.67836 -23.92894 -23.73822 -21.24425 -19.57649 -18.90013 -18.33040 -16.99146 -16.49527 -16.46540 -16.05365 -15.36264 -15.16275 -15.09674 -14.83778 -14.36737 -14.25956 -13.90596 -13.79539 -13.31888 -13.02114 -12.88722 -12.81558 -12.73700 -12.60959 -12.52303 -12.30987 -12.25445 -12.06944 -12.05754 -11.82200 -11.71926 -11.53117 -11.36459 -11.31470 -11.19019 -11.06436 -10.84006 -10.66346 -10.50147 -9.21439 -8.13819 -6.21255 1.40683 1.43188 1.50465 2.43825 3.19859 3.31508 3.63123 3.71506 3.97973 4.15634 4.23004 4.36755 4.39239 4.40067 4.44023 4.54473 4.57057 4.68003 4.75919 4.80287 4.81683 4.84595 4.90417 4.96391 5.04527 5.07580 5.12422 5.16621 5.18328 5.18762 5.21383 5.24086 5.30476 5.37730 5.40211 5.51015 5.52231 5.53348 5.57247 5.58375 5.66949 5.68339 5.87485 5.92520 6.21638 6.38397 6.61598 6.93654 7.46151 8.98456 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.032271 B = 0.004056 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.436706 B = 6901.243782 C = 7250.288708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C -0.058 4.058 4 C -0.139 4.139 5 C -0.103 4.103 6 C -0.119 4.119 7 C -0.116 4.116 8 C 0.085 3.915 9 H 0.028 0.972 10 N -0.672 5.672 11 C 0.083 3.917 12 C -0.054 4.054 13 C -0.121 4.121 14 C -0.104 4.104 15 C 0.041 3.959 16 C -0.515 4.515 17 H 0.066 0.934 18 C -0.004 4.004 19 N -0.939 5.939 20 Si 0.957 3.043 21 H -0.268 1.268 22 H -0.288 1.288 23 H -0.267 1.267 24 H 0.060 0.940 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.044 0.956 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.048 0.952 37 H 0.064 0.936 38 H 0.344 0.656 39 H 0.052 0.948 40 H 0.009 0.991 41 H 0.066 0.934 42 H 0.048 0.952 43 H 0.034 0.966 44 H 0.028 0.972 45 H 0.038 0.962 46 H 0.068 0.932 47 H -0.018 1.018 48 H -0.019 1.019 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.143 8.313 -1.490 22.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.059 4.059 4 C -0.196 4.196 5 C -0.140 4.140 6 C -0.157 4.157 7 C -0.154 4.154 8 C -0.025 4.025 9 H 0.046 0.954 10 N -0.306 5.306 11 C -0.047 4.047 12 C -0.054 4.054 13 C -0.178 4.178 14 C -0.161 4.161 15 C 0.003 3.997 16 C -0.553 4.553 17 H 0.084 0.916 18 C -0.201 4.201 19 N -0.580 5.580 20 Si 0.782 3.218 21 H -0.193 1.193 22 H -0.213 1.213 23 H -0.192 1.192 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.167 0.833 39 H 0.070 0.930 40 H 0.027 0.973 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.053 0.947 44 H 0.047 0.953 45 H 0.057 0.943 46 H 0.087 0.913 47 H 0.000 1.000 48 H -0.001 1.001 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -20.919 8.345 -2.123 22.622 hybrid contribution 1.470 -0.522 1.096 1.906 sum -19.449 7.822 -1.027 20.989 Atomic orbital electron populations 1.21824 0.94923 1.01680 1.02175 1.21508 0.96261 0.95164 1.01819 1.21239 0.92298 0.96108 0.96242 1.21952 1.02024 0.99943 0.95710 1.22387 0.97557 0.97645 0.96438 1.22438 0.94121 0.97635 1.01469 1.22398 0.97911 0.97732 0.97400 1.22302 0.94854 0.88779 0.96542 0.95435 1.60870 1.02828 1.08979 1.57963 1.21807 0.89094 0.96390 0.97383 1.20482 0.95009 0.93611 0.96336 1.21673 0.99157 0.99903 0.97094 1.21474 1.00536 0.99363 0.94769 1.18996 0.91419 0.95568 0.93682 1.21587 0.92986 0.94231 1.46492 0.91552 1.25931 0.97522 1.01195 0.95433 1.70113 1.03280 1.33864 1.50756 0.85624 0.76910 0.80207 0.79062 1.19288 1.21336 1.19218 0.92134 0.92828 0.92270 0.91398 0.92975 0.92618 0.90888 0.93678 0.91452 0.90422 0.90924 0.91273 0.93339 0.91715 0.83284 0.92956 0.97291 0.91540 0.93322 0.94702 0.95288 0.94287 0.91326 0.99979 1.00056 0.93171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.38 71.98 0.68 -1.54 16 2 C -0.11 -2.05 3.57 30.59 0.11 -1.94 16 3 C -0.06 -1.10 0.68 -51.46 -0.04 -1.13 16 4 C -0.14 -2.33 7.91 71.98 0.57 -1.76 16 5 C -0.10 -1.70 4.76 31.67 0.15 -1.55 16 6 C -0.12 -2.13 6.91 31.88 0.22 -1.91 16 7 C -0.12 -2.78 5.99 31.67 0.19 -2.59 16 8 C 0.09 2.09 2.86 45.64 0.13 2.22 16 9 H 0.03 0.74 7.51 -2.39 -0.02 0.73 16 10 N -0.67 -18.97 4.48 -487.82 -2.19 -21.15 16 11 C 0.08 2.97 4.47 86.31 0.39 3.35 16 12 C -0.05 -2.20 0.60 -52.18 -0.03 -2.23 16 13 C -0.12 -4.47 7.89 71.98 0.57 -3.91 16 14 C -0.10 -4.04 8.06 71.98 0.58 -3.46 16 15 C 0.04 2.18 4.04 29.85 0.12 2.30 16 16 C -0.51 -28.95 7.65 25.60 0.20 -28.76 16 17 H 0.07 3.56 5.68 -2.91 -0.02 3.54 16 18 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 19 N -0.94 -58.26 13.29 21.45 0.28 -57.98 16 20 Si 0.96 44.89 29.54 68.60 2.03 46.91 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 22 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 23 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 24 H 0.06 0.83 6.92 -2.39 -0.02 0.81 16 25 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 26 H 0.06 0.79 6.55 -2.39 -0.02 0.78 16 27 H 0.07 1.47 7.55 -2.38 -0.02 1.45 16 28 H 0.05 1.03 6.97 -2.39 -0.02 1.01 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 1.00 6.52 -2.39 -0.02 0.99 16 31 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.07 1.15 7.47 -2.39 -0.02 1.14 16 33 H 0.08 1.05 7.84 -2.39 -0.02 1.03 16 34 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.06 1.73 8.05 -2.39 -0.02 1.71 16 38 H 0.34 9.18 4.17 -89.69 -0.37 8.81 16 39 H 0.05 2.00 7.76 -2.39 -0.02 1.98 16 40 H 0.01 0.34 8.10 -2.39 -0.02 0.32 16 41 H 0.07 2.00 6.57 -2.39 -0.02 1.98 16 42 H 0.05 1.94 6.62 -2.39 -0.02 1.92 16 43 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.04 1.60 6.62 -2.39 -0.02 1.59 16 46 H 0.07 2.29 7.60 -2.39 -0.02 2.28 16 47 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 48 H -0.02 -1.11 8.14 -2.38 -0.02 -1.13 16 49 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -62.45 357.09 4.92 -57.53 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.51 Total: 17.37 kcal Atomic # 6 Polarization: -46.97 SS G_CDS: 4.29 Total: -42.68 kcal Atomic # 7 Polarization: -77.23 SS G_CDS: -1.90 Total: -79.13 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -62.45 4.92 -57.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593629200.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.194 kcal (2) G-P(sol) polarization free energy of solvation -62.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds