Wall clock time and date at job start Mon Mar 30 2020 08:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47285 * 2 1 4 4 C 1.53001 * 110.05519 * 58.58481 * 3 2 1 5 5 C 1.53872 * 110.03175 * 297.16866 * 3 2 1 6 6 C 1.54265 * 106.60034 * 240.71499 * 5 3 2 7 7 C 1.54894 * 104.19437 * 336.39268 * 6 5 3 8 8 C 1.54266 * 110.03266 * 180.02562 * 3 2 1 9 9 H 1.09002 * 110.60068 * 24.15132 * 8 3 2 10 10 N 1.46904 * 110.48324 * 261.57357 * 8 3 2 11 11 C 1.46899 * 111.00029 * 158.77194 * 10 8 3 12 12 C 1.52997 * 109.47254 * 179.97438 * 11 10 8 13 13 C 1.53006 * 109.47127 * 300.00134 * 12 11 10 14 14 C 1.52999 * 109.47317 * 59.99645 * 12 11 10 15 15 C 1.52992 * 109.47482 * 179.97438 * 12 11 10 16 16 C 1.50698 * 109.47592 * 179.97438 * 15 12 11 17 17 H 1.08003 * 120.00057 * 0.02562 * 16 15 12 18 18 C 1.37876 * 120.00356 * 179.97438 * 16 15 12 19 19 N 1.31511 * 120.00113 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99923 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47375 * 89.99678 * 20 18 16 22 22 H 1.48508 * 109.47196 * 209.99673 * 20 18 16 23 23 H 1.48504 * 109.47051 * 329.99297 * 20 18 16 24 24 H 1.09002 * 109.47005 * 300.00060 * 1 2 3 25 25 H 1.08996 * 109.47249 * 59.99751 * 1 2 3 26 26 H 1.08996 * 109.47092 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46789 * 239.99645 * 2 1 3 28 28 H 1.09001 * 109.46804 * 120.00124 * 2 1 3 29 29 H 1.09007 * 109.46772 * 181.42038 * 4 3 2 30 30 H 1.09000 * 109.46971 * 301.41535 * 4 3 2 31 31 H 1.08996 * 109.47067 * 61.41700 * 4 3 2 32 32 H 1.08995 * 110.03673 * 121.43279 * 5 3 2 33 33 H 1.09004 * 110.07331 * 0.02562 * 5 3 2 34 34 H 1.08999 * 110.49509 * 217.71276 * 6 5 3 35 35 H 1.09009 * 110.48735 * 95.06192 * 6 5 3 36 36 H 1.08999 * 110.75357 * 279.62374 * 7 6 5 37 37 H 1.08999 * 110.75523 * 156.25687 * 7 6 5 38 38 H 1.00908 * 110.99583 * 282.72106 * 10 8 3 39 39 H 1.09002 * 109.47043 * 299.99792 * 11 10 8 40 40 H 1.09001 * 109.47354 * 59.99854 * 11 10 8 41 41 H 1.08993 * 109.46955 * 60.00011 * 13 12 11 42 42 H 1.09000 * 109.47050 * 179.97438 * 13 12 11 43 43 H 1.09001 * 109.47002 * 299.99574 * 13 12 11 44 44 H 1.09002 * 109.46716 * 60.00091 * 14 12 11 45 45 H 1.09000 * 109.47486 * 180.02562 * 14 12 11 46 46 H 1.09001 * 109.47362 * 300.00732 * 14 12 11 47 47 H 1.09002 * 109.47103 * 300.00247 * 15 12 11 48 48 H 1.09001 * 109.47066 * 60.00169 * 15 12 11 49 49 H 0.97008 * 120.00167 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5087 2.1868 1.2266 5 6 1.5934 2.1594 -1.2861 6 6 2.8802 2.5852 -2.0229 7 6 3.9508 2.6587 -0.9059 8 6 3.5826 1.4575 -0.0006 9 1 3.9751 0.5304 -0.4184 10 7 4.0953 1.6640 1.3605 11 6 5.4818 1.1930 1.4779 12 6 5.9799 1.4248 2.9058 13 6 5.9195 2.9187 3.2309 14 6 5.0944 0.6533 3.8865 15 6 7.4237 0.9337 3.0284 16 6 7.9146 1.1625 4.4346 17 1 7.2619 1.6128 5.1679 18 6 9.1966 0.7961 4.7856 19 7 9.6251 0.9963 6.0127 20 14 10.3253 0.0166 3.5176 21 1 11.0878 1.0790 2.8139 22 1 11.2717 -0.9044 4.1970 23 1 9.5139 -0.7446 2.5340 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.8569 3.2196 1.2038 30 1 0.4188 2.1706 1.2174 31 1 1.8717 1.7008 2.1320 32 1 0.9982 3.0377 -1.0366 33 1 1.0128 1.4804 -1.9106 34 1 2.7477 3.5615 -2.4891 35 1 3.1574 1.8398 -2.7684 36 1 3.8711 3.5962 -0.3557 37 1 4.9512 2.5371 -1.3212 38 1 4.0181 2.6325 1.6328 39 1 5.5249 0.1288 1.2459 40 1 6.1127 1.7429 0.7796 41 1 4.8908 3.2681 3.1438 42 1 6.2740 3.0837 4.2484 43 1 6.5504 3.4683 2.5324 44 1 5.1375 -0.4109 3.6549 45 1 5.4490 0.8188 4.9038 46 1 4.0656 1.0027 3.7993 47 1 7.4663 -0.1306 2.7969 48 1 8.0548 1.4830 2.3298 49 1 10.5270 0.7381 6.2597 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593629202.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:58:11 Heat of formation + Delta-G solvation = -38.614815 kcal Electronic energy + Delta-G solvation = -21956.111139 eV Core-core repulsion = 19109.399185 eV Total energy + Delta-G solvation = -2846.711955 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.79548 -37.26242 -33.99447 -33.00248 -31.92845 -29.24974 -27.99032 -27.03171 -26.33941 -25.69038 -24.70831 -22.62991 -21.82023 -20.48472 -18.50353 -17.63575 -16.77301 -15.93639 -15.68799 -14.73672 -14.41016 -14.08537 -14.02671 -13.71803 -13.45759 -13.27821 -12.99328 -12.66693 -12.36715 -12.20507 -12.12902 -11.90954 -11.74622 -11.65683 -11.19432 -11.07535 -10.99447 -10.92002 -10.81669 -10.66500 -10.54816 -10.44203 -10.31933 -10.28765 -10.21334 -9.77447 -9.64151 -9.23091 -8.86283 -8.47592 -7.97909 -5.97951 -3.93812 3.33333 3.41133 3.44989 4.33826 4.47522 4.50198 4.59043 4.87440 5.08079 5.14974 5.27155 5.32407 5.35373 5.41477 5.46096 5.53224 5.58810 5.61879 5.67785 5.73785 5.79930 5.85314 5.90191 5.91725 5.95155 6.03914 6.11821 6.16242 6.19460 6.24698 6.27173 6.30601 6.46067 6.46777 6.56700 6.63875 6.74421 6.83682 7.12221 7.18212 7.23440 7.36948 7.41981 7.50920 7.73076 7.88307 8.62339 9.08225 9.65440 11.15221 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.029545 B = 0.004198 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.493329 B = 6667.627237 C = 6897.877095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.108 4.108 3 C -0.052 4.052 4 C -0.132 4.132 5 C -0.118 4.118 6 C -0.121 4.121 7 C -0.155 4.155 8 C 0.092 3.908 9 H 0.079 0.921 10 N -0.674 5.674 11 C 0.068 3.932 12 C -0.048 4.048 13 C -0.130 4.130 14 C -0.116 4.116 15 C -0.004 4.004 16 C -0.506 4.506 17 H 0.078 0.922 18 C 0.064 3.936 19 N -0.906 5.906 20 Si 0.875 3.125 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.267 1.267 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.340 0.660 39 H 0.063 0.937 40 H 0.021 0.979 41 H 0.035 0.965 42 H 0.068 0.932 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.058 0.942 46 H 0.044 0.956 47 H 0.014 0.986 48 H 0.007 0.993 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.900 1.820 -14.961 22.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.146 4.146 3 C -0.053 4.053 4 C -0.190 4.190 5 C -0.156 4.156 6 C -0.159 4.159 7 C -0.195 4.195 8 C -0.019 4.019 9 H 0.097 0.903 10 N -0.305 5.305 11 C -0.061 4.061 12 C -0.049 4.049 13 C -0.187 4.187 14 C -0.174 4.174 15 C -0.042 4.042 16 C -0.544 4.544 17 H 0.096 0.904 18 C -0.136 4.136 19 N -0.546 5.546 20 Si 0.703 3.297 21 H -0.205 1.205 22 H -0.216 1.216 23 H -0.191 1.191 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.161 0.839 39 H 0.082 0.918 40 H 0.039 0.961 41 H 0.054 0.946 42 H 0.087 0.913 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.077 0.923 46 H 0.063 0.937 47 H 0.032 0.968 48 H 0.025 0.975 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.011 1.203 -14.578 22.436 hybrid contribution 1.377 0.288 -1.201 1.849 sum -15.634 1.491 -15.779 22.263 Atomic orbital electron populations 1.21874 0.96377 1.01079 1.01767 1.21553 0.95300 0.95796 1.01905 1.21109 0.94255 0.95062 0.94839 1.21793 0.99315 0.99377 0.98467 1.22337 0.97208 0.99821 0.96214 1.22250 0.95413 1.00784 0.97472 1.23216 0.98716 0.99545 0.97985 1.22469 0.94003 0.97230 0.88208 0.90304 1.60630 1.21338 1.25993 1.22504 1.22136 0.87053 0.99423 0.97510 1.20406 0.96967 0.95373 0.92115 1.21775 0.98562 0.95534 1.02849 1.21599 0.97675 0.98546 0.99548 1.19624 0.91164 0.95672 0.97746 1.21148 0.98424 1.39939 0.94876 0.90444 1.25013 0.98029 0.95568 0.94977 1.69911 1.17913 1.48775 1.17995 0.86854 0.80915 0.79720 0.82206 1.20548 1.21571 1.19149 0.92389 0.92997 0.93299 0.92680 0.91347 0.93617 0.93485 0.90677 0.91981 0.91832 0.92147 0.91943 0.91521 0.91911 0.83948 0.91823 0.96081 0.94618 0.91262 0.94247 0.94307 0.92272 0.93657 0.96781 0.97493 0.92927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.31 37.16 0.35 -0.99 16 2 C -0.11 -1.08 4.72 -26.73 -0.13 -1.21 16 3 C -0.05 -0.53 0.66 -153.39 -0.10 -0.63 16 4 C -0.13 -1.38 6.94 37.16 0.26 -1.12 16 5 C -0.12 -1.07 5.58 -25.62 -0.14 -1.21 16 6 C -0.12 -1.11 6.83 -25.07 -0.17 -1.28 16 7 C -0.16 -1.67 6.41 -24.76 -0.16 -1.83 16 8 C 0.09 1.07 2.55 -66.07 -0.17 0.90 16 9 H 0.08 0.99 7.59 -51.93 -0.39 0.59 16 10 N -0.67 -9.05 4.07 -105.00 -0.43 -9.48 16 11 C 0.07 1.09 4.49 -3.83 -0.02 1.08 16 12 C -0.05 -0.92 0.60 -154.51 -0.09 -1.02 16 13 C -0.13 -2.38 7.89 37.16 0.29 -2.09 16 14 C -0.12 -2.23 8.06 37.16 0.30 -1.93 16 15 C 0.00 -0.10 3.11 -27.89 -0.09 -0.19 16 16 C -0.51 -14.02 8.20 -34.44 -0.28 -14.30 16 17 H 0.08 2.29 5.92 -52.48 -0.31 1.98 16 18 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 19 N -0.91 -27.91 13.96 55.43 0.77 -27.13 16 20 Si 0.88 21.92 27.47 -169.99 -4.67 17.25 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 24 H 0.06 0.51 6.42 -51.93 -0.33 0.18 16 25 H 0.05 0.42 6.66 -51.93 -0.35 0.07 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.04 0.47 7.96 -51.92 -0.41 0.06 16 30 H 0.05 0.45 6.38 -51.93 -0.33 0.11 16 31 H 0.07 0.90 7.38 -51.93 -0.38 0.52 16 32 H 0.06 0.55 7.67 -51.93 -0.40 0.15 16 33 H 0.06 0.54 6.53 -51.93 -0.34 0.20 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 36 H 0.07 0.73 7.82 -51.93 -0.41 0.32 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.34 4.52 5.67 -39.29 -0.22 4.30 16 39 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 40 H 0.02 0.34 8.12 -51.93 -0.42 -0.08 16 41 H 0.03 0.55 6.57 -51.93 -0.34 0.21 16 42 H 0.07 1.44 6.62 -51.93 -0.34 1.10 16 43 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 1.26 6.62 -51.93 -0.34 0.92 16 46 H 0.04 0.77 7.60 -51.93 -0.39 0.38 16 47 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 48 H 0.01 0.16 7.57 -51.93 -0.39 -0.23 16 49 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 354.90 15.07 5.35 5.35 Total: -1.00 -28.60 354.90 -8.68 -37.28 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -9.46 Total: 0.77 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: -0.25 Total: -24.04 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.35 Total: -36.61 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.60 -8.68 -37.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593629202.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.335 kcal (2) G-P(sol) polarization free energy of solvation -28.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds