Wall clock time and date at job start Mon Mar 30 2020 08:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47285 * 2 1 4 4 C 1.53001 * 110.05519 * 58.58481 * 3 2 1 5 5 C 1.53872 * 110.03175 * 297.16866 * 3 2 1 6 6 C 1.54265 * 106.60034 * 240.71499 * 5 3 2 7 7 C 1.54894 * 104.19437 * 336.39268 * 6 5 3 8 8 C 1.54266 * 110.03266 * 180.02562 * 3 2 1 9 9 H 1.09002 * 110.60068 * 24.15132 * 8 3 2 10 10 N 1.46904 * 110.48324 * 261.57357 * 8 3 2 11 11 C 1.46899 * 111.00029 * 158.77194 * 10 8 3 12 12 C 1.52997 * 109.47254 * 179.97438 * 11 10 8 13 13 C 1.53006 * 109.47127 * 300.00134 * 12 11 10 14 14 C 1.52999 * 109.47317 * 59.99645 * 12 11 10 15 15 C 1.52992 * 109.47482 * 179.97438 * 12 11 10 16 16 C 1.50698 * 109.47592 * 179.97438 * 15 12 11 17 17 H 1.08003 * 120.00057 * 0.02562 * 16 15 12 18 18 C 1.37876 * 120.00356 * 179.97438 * 16 15 12 19 19 N 1.31511 * 120.00113 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99923 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47375 * 89.99678 * 20 18 16 22 22 H 1.48508 * 109.47196 * 209.99673 * 20 18 16 23 23 H 1.48504 * 109.47051 * 329.99297 * 20 18 16 24 24 H 1.09002 * 109.47005 * 300.00060 * 1 2 3 25 25 H 1.08996 * 109.47249 * 59.99751 * 1 2 3 26 26 H 1.08996 * 109.47092 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46789 * 239.99645 * 2 1 3 28 28 H 1.09001 * 109.46804 * 120.00124 * 2 1 3 29 29 H 1.09007 * 109.46772 * 181.42038 * 4 3 2 30 30 H 1.09000 * 109.46971 * 301.41535 * 4 3 2 31 31 H 1.08996 * 109.47067 * 61.41700 * 4 3 2 32 32 H 1.08995 * 110.03673 * 121.43279 * 5 3 2 33 33 H 1.09004 * 110.07331 * 0.02562 * 5 3 2 34 34 H 1.08999 * 110.49509 * 217.71276 * 6 5 3 35 35 H 1.09009 * 110.48735 * 95.06192 * 6 5 3 36 36 H 1.08999 * 110.75357 * 279.62374 * 7 6 5 37 37 H 1.08999 * 110.75523 * 156.25687 * 7 6 5 38 38 H 1.00908 * 110.99583 * 282.72106 * 10 8 3 39 39 H 1.09002 * 109.47043 * 299.99792 * 11 10 8 40 40 H 1.09001 * 109.47354 * 59.99854 * 11 10 8 41 41 H 1.08993 * 109.46955 * 60.00011 * 13 12 11 42 42 H 1.09000 * 109.47050 * 179.97438 * 13 12 11 43 43 H 1.09001 * 109.47002 * 299.99574 * 13 12 11 44 44 H 1.09002 * 109.46716 * 60.00091 * 14 12 11 45 45 H 1.09000 * 109.47486 * 180.02562 * 14 12 11 46 46 H 1.09001 * 109.47362 * 300.00732 * 14 12 11 47 47 H 1.09002 * 109.47103 * 300.00247 * 15 12 11 48 48 H 1.09001 * 109.47066 * 60.00169 * 15 12 11 49 49 H 0.97008 * 120.00167 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5087 2.1868 1.2266 5 6 1.5934 2.1594 -1.2861 6 6 2.8802 2.5852 -2.0229 7 6 3.9508 2.6587 -0.9059 8 6 3.5826 1.4575 -0.0006 9 1 3.9751 0.5304 -0.4184 10 7 4.0953 1.6640 1.3605 11 6 5.4818 1.1930 1.4779 12 6 5.9799 1.4248 2.9058 13 6 5.9195 2.9187 3.2309 14 6 5.0944 0.6533 3.8865 15 6 7.4237 0.9337 3.0284 16 6 7.9146 1.1625 4.4346 17 1 7.2619 1.6128 5.1679 18 6 9.1966 0.7961 4.7856 19 7 9.6251 0.9963 6.0127 20 14 10.3253 0.0166 3.5176 21 1 11.0878 1.0790 2.8139 22 1 11.2717 -0.9044 4.1970 23 1 9.5139 -0.7446 2.5340 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.8569 3.2196 1.2038 30 1 0.4188 2.1706 1.2174 31 1 1.8717 1.7008 2.1320 32 1 0.9982 3.0377 -1.0366 33 1 1.0128 1.4804 -1.9106 34 1 2.7477 3.5615 -2.4891 35 1 3.1574 1.8398 -2.7684 36 1 3.8711 3.5962 -0.3557 37 1 4.9512 2.5371 -1.3212 38 1 4.0181 2.6325 1.6328 39 1 5.5249 0.1288 1.2459 40 1 6.1127 1.7429 0.7796 41 1 4.8908 3.2681 3.1438 42 1 6.2740 3.0837 4.2484 43 1 6.5504 3.4683 2.5324 44 1 5.1375 -0.4109 3.6549 45 1 5.4490 0.8188 4.9038 46 1 4.0656 1.0027 3.7993 47 1 7.4663 -0.1306 2.7969 48 1 8.0548 1.4830 2.3298 49 1 10.5270 0.7381 6.2597 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593629202.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:58:10 Heat of formation + Delta-G solvation = -52.989113 kcal Electronic energy + Delta-G solvation = -21956.734455 eV Core-core repulsion = 19109.399185 eV Total energy + Delta-G solvation = -2847.335271 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.69607 -38.73303 -35.24672 -34.32385 -33.50549 -30.10577 -29.70197 -28.20692 -27.90846 -26.51268 -26.09870 -23.91600 -23.12421 -21.34610 -19.71066 -18.88398 -18.85298 -16.88086 -16.68893 -16.27654 -15.74443 -15.41273 -15.27629 -14.95623 -14.50103 -14.32404 -14.22855 -14.18572 -13.95028 -13.49396 -13.12139 -13.03105 -12.83787 -12.69945 -12.66052 -12.48815 -12.36911 -12.21670 -12.07506 -11.91228 -11.77978 -11.73890 -11.45508 -11.35618 -11.31485 -11.10355 -11.06180 -10.93762 -10.70981 -10.69928 -9.07214 -8.21841 -6.21901 1.34576 1.36752 1.47789 2.39119 3.13187 3.30682 3.67448 3.78677 4.02113 4.13858 4.22556 4.33072 4.34235 4.40278 4.49413 4.53707 4.59473 4.69640 4.74648 4.78341 4.84268 4.87879 4.90429 4.93802 5.02221 5.05324 5.08913 5.12191 5.17266 5.19865 5.20482 5.29185 5.35870 5.36810 5.39065 5.41990 5.45176 5.52454 5.54669 5.63792 5.68510 5.74751 5.78580 5.83343 6.27495 6.43423 6.63209 6.85387 7.40573 8.94433 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.029545 B = 0.004198 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.493329 B = 6667.627237 C = 6897.877095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.107 4.107 3 C -0.048 4.048 4 C -0.129 4.129 5 C -0.113 4.113 6 C -0.117 4.117 7 C -0.154 4.154 8 C 0.090 3.910 9 H 0.071 0.929 10 N -0.672 5.672 11 C 0.082 3.918 12 C -0.047 4.047 13 C -0.122 4.122 14 C -0.107 4.107 15 C -0.003 4.003 16 C -0.503 4.503 17 H 0.044 0.956 18 C 0.002 3.998 19 N -0.954 5.954 20 Si 0.940 3.060 21 H -0.270 1.270 22 H -0.288 1.288 23 H -0.251 1.251 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.343 0.657 39 H 0.060 0.940 40 H 0.023 0.977 41 H 0.065 0.935 42 H 0.035 0.965 43 H 0.042 0.958 44 H 0.035 0.965 45 H 0.026 0.974 46 H 0.067 0.933 47 H 0.011 0.989 48 H 0.009 0.991 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.271 1.892 -17.740 25.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.145 4.145 3 C -0.049 4.049 4 C -0.186 4.186 5 C -0.151 4.151 6 C -0.155 4.155 7 C -0.193 4.193 8 C -0.021 4.021 9 H 0.089 0.911 10 N -0.303 5.303 11 C -0.047 4.047 12 C -0.048 4.048 13 C -0.180 4.180 14 C -0.164 4.164 15 C -0.040 4.040 16 C -0.541 4.541 17 H 0.063 0.937 18 C -0.194 4.194 19 N -0.596 5.596 20 Si 0.765 3.235 21 H -0.196 1.196 22 H -0.214 1.214 23 H -0.175 1.175 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.163 0.837 39 H 0.078 0.922 40 H 0.041 0.959 41 H 0.084 0.916 42 H 0.054 0.946 43 H 0.061 0.939 44 H 0.054 0.946 45 H 0.045 0.955 46 H 0.086 0.914 47 H 0.029 0.971 48 H 0.028 0.972 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.405 1.279 -17.376 25.344 hybrid contribution 1.730 0.294 -0.278 1.777 sum -16.674 1.573 -17.653 24.334 Atomic orbital electron populations 1.21841 0.95220 1.01511 1.02168 1.21529 0.96301 0.95510 1.01112 1.21081 0.92976 0.95320 0.95518 1.21753 0.99990 0.99178 0.97727 1.22303 0.97261 1.00071 0.95471 1.22238 0.94756 1.01524 0.97006 1.23173 0.98963 0.98866 0.98301 1.22526 0.95039 0.97369 0.87145 0.91090 1.60583 1.19373 1.26128 1.24166 1.21839 0.88603 0.99383 0.94912 1.20338 0.94439 0.95648 0.94350 1.21678 1.00409 0.95136 1.00765 1.21489 0.98804 0.98488 0.97611 1.19590 0.93990 0.95573 0.94888 1.21433 0.97887 1.38435 0.96350 0.93745 1.25906 0.99986 0.96544 0.96967 1.70064 1.18535 1.50754 1.20285 0.85811 0.78868 0.79067 0.79792 1.19576 1.21398 1.17478 0.92554 0.91962 0.92940 0.92462 0.93183 0.93498 0.92447 0.92388 0.91381 0.90925 0.91151 0.91584 0.91565 0.92555 0.83651 0.92199 0.95890 0.91591 0.94602 0.93854 0.94590 0.95490 0.91421 0.97093 0.97226 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.31 71.98 0.67 -1.58 16 2 C -0.11 -1.93 4.72 30.59 0.14 -1.79 16 3 C -0.05 -0.86 0.66 -51.46 -0.03 -0.90 16 4 C -0.13 -2.40 6.94 71.98 0.50 -1.90 16 5 C -0.11 -1.69 5.58 31.32 0.17 -1.51 16 6 C -0.12 -1.80 6.83 31.67 0.22 -1.59 16 7 C -0.15 -2.92 6.41 31.87 0.20 -2.72 16 8 C 0.09 1.89 2.55 45.98 0.12 2.01 16 9 H 0.07 1.64 7.59 -2.39 -0.02 1.62 16 10 N -0.67 -16.77 4.07 -486.10 -1.98 -18.75 16 11 C 0.08 2.52 4.49 86.30 0.39 2.91 16 12 C -0.05 -1.79 0.60 -52.18 -0.03 -1.82 16 13 C -0.12 -4.43 7.89 71.98 0.57 -3.86 16 14 C -0.11 -4.08 8.06 71.98 0.58 -3.50 16 15 C 0.00 -0.12 3.11 29.84 0.09 -0.03 16 16 C -0.50 -28.58 8.20 25.60 0.21 -28.37 16 17 H 0.04 2.76 5.92 -2.91 -0.02 2.75 16 18 C 0.00 0.10 5.47 84.65 0.46 0.56 16 19 N -0.95 -60.50 13.96 21.45 0.30 -60.21 16 20 Si 0.94 45.24 27.47 68.60 1.88 47.12 16 21 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 23 H -0.25 -11.34 6.54 99.48 0.65 -10.69 16 24 H 0.06 0.86 6.42 -2.39 -0.02 0.85 16 25 H 0.06 0.81 6.66 -2.39 -0.02 0.79 16 26 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.05 1.08 8.14 -2.39 -0.02 1.07 16 29 H 0.05 0.85 7.96 -2.38 -0.02 0.83 16 30 H 0.06 0.95 6.38 -2.39 -0.02 0.93 16 31 H 0.06 1.29 7.38 -2.39 -0.02 1.27 16 32 H 0.07 0.96 7.67 -2.39 -0.02 0.94 16 33 H 0.07 0.98 6.53 -2.39 -0.02 0.96 16 34 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.07 1.27 7.82 -2.39 -0.02 1.26 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.34 8.31 5.67 -89.69 -0.51 7.80 16 39 H 0.06 1.90 8.08 -2.39 -0.02 1.88 16 40 H 0.02 0.70 8.12 -2.39 -0.02 0.68 16 41 H 0.07 1.96 6.57 -2.39 -0.02 1.94 16 42 H 0.03 1.52 6.62 -2.39 -0.02 1.50 16 43 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.03 1.17 6.62 -2.39 -0.02 1.16 16 46 H 0.07 2.25 7.60 -2.39 -0.02 2.23 16 47 H 0.01 0.51 7.20 -2.39 -0.02 0.50 16 48 H 0.01 0.44 7.57 -2.39 -0.02 0.42 16 49 H 0.26 15.63 8.31 -92.70 -0.77 14.86 16 Total: -1.00 -62.41 354.90 4.79 -57.62 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.32 Total: 18.30 kcal Atomic # 6 Polarization: -48.35 SS G_CDS: 4.26 Total: -44.09 kcal Atomic # 7 Polarization: -77.27 SS G_CDS: -1.68 Total: -78.95 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.88 Total: 47.12 kcal Total: -62.41 4.79 -57.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593629202.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.633 kcal (2) G-P(sol) polarization free energy of solvation -62.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds