Wall clock time and date at job start Mon Mar 30 2020 07:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34777 * 119.99952 * 2 1 4 4 O 1.21290 * 119.99694 * 180.02562 * 3 2 1 5 5 C 1.50693 * 120.00192 * 359.97438 * 3 2 1 6 6 C 1.53003 * 109.47438 * 180.02562 * 5 3 2 7 7 C 1.52995 * 109.47237 * 180.02562 * 6 5 3 8 8 C 1.50706 * 109.47150 * 179.97438 * 7 6 5 9 9 H 1.08003 * 119.99420 * 359.97438 * 8 7 6 10 10 C 1.37872 * 120.00024 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00076 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99764 * 180.02562 * 10 8 7 13 13 H 1.48492 * 109.47263 * 89.99876 * 12 10 8 14 14 H 1.48498 * 109.46896 * 210.00081 * 12 10 8 15 15 H 1.48496 * 109.47142 * 329.99576 * 12 10 8 16 16 C 1.46503 * 120.00148 * 179.97438 * 2 1 3 17 17 C 1.54065 * 108.87405 * 62.97576 * 16 2 1 18 18 C 1.54066 * 112.81762 * 197.50625 * 17 16 2 19 19 C 1.50470 * 112.49875 * 318.28617 * 18 17 16 20 20 C 1.54246 * 108.51998 * 94.14981 * 19 18 17 21 21 C 1.45537 * 112.40731 * 280.01038 * 20 19 18 22 22 C 1.50473 * 108.87630 * 300.00259 * 16 2 1 23 23 H 1.09000 * 109.47590 * 270.00596 * 1 2 3 24 24 H 1.08998 * 109.47131 * 30.00177 * 1 2 3 25 25 H 1.09000 * 109.47649 * 150.00386 * 1 2 3 26 26 H 1.08999 * 109.47638 * 300.00861 * 5 3 2 27 27 H 1.08999 * 109.46843 * 60.00866 * 5 3 2 28 28 H 1.09006 * 109.46846 * 300.00551 * 6 5 3 29 29 H 1.09003 * 109.46923 * 59.99980 * 6 5 3 30 30 H 1.08992 * 109.47298 * 299.99937 * 7 6 5 31 31 H 1.08999 * 109.47192 * 60.00414 * 7 6 5 32 32 H 0.97005 * 119.99532 * 179.97438 * 11 10 8 33 33 H 1.09002 * 108.85422 * 181.44123 * 16 2 1 34 34 H 1.09005 * 108.81720 * 318.37164 * 17 16 2 35 35 H 1.09004 * 108.81387 * 76.75411 * 17 16 2 36 36 H 1.08997 * 108.87949 * 197.51000 * 18 17 16 37 37 H 1.09001 * 108.87760 * 79.06417 * 18 17 16 38 38 H 1.09003 * 109.63195 * 334.43897 * 19 18 17 39 39 H 1.09001 * 109.62960 * 213.85940 * 19 18 17 40 40 H 1.09001 * 108.89247 * 40.76541 * 20 19 18 41 41 H 1.09004 * 108.89281 * 159.35535 * 20 19 18 42 42 H 1.09000 * 108.89458 * 182.68905 * 21 20 19 43 43 H 1.08995 * 108.89787 * 301.28165 * 21 20 19 44 44 H 1.09006 * 109.62936 * 95.21532 * 22 16 2 45 45 H 1.08998 * 109.78811 * 334.73047 * 22 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3796 3.6352 -0.0011 7 6 1.6146 4.9602 -0.0011 8 6 2.5939 6.1057 -0.0009 9 1 3.6558 5.9083 -0.0005 10 6 2.1343 7.4056 -0.0003 11 7 0.8413 7.6459 -0.0004 12 14 3.3483 8.8254 -0.0009 13 1 3.6690 9.2019 -1.4010 14 1 2.7489 9.9894 0.6998 15 1 4.5920 8.4136 0.6982 16 6 2.1975 -1.2687 0.0006 17 6 1.8731 -2.0321 -1.2977 18 6 2.2309 -3.5284 -1.2163 19 6 3.5507 -3.7686 -0.5348 20 6 3.2874 -4.0440 0.9599 21 6 3.0661 -2.8218 1.7185 22 6 1.8243 -2.0458 1.2339 23 1 -0.3634 0.0001 1.0276 24 1 -0.3633 0.8899 -0.5138 25 1 -0.3634 -0.8900 -0.5138 26 1 0.7589 2.5298 -0.8907 27 1 0.7585 2.5302 0.8892 28 1 3.0063 3.5778 0.8889 29 1 3.0063 3.5771 -0.8911 30 1 0.9877 5.0178 -0.8908 31 1 0.9883 5.0181 0.8892 32 1 0.5181 8.5605 0.0004 33 1 3.2667 -1.0581 0.0264 34 1 0.8072 -1.9363 -1.5050 35 1 2.4319 -1.5828 -2.1187 36 1 2.2763 -3.9357 -2.2263 37 1 1.4486 -4.0485 -0.6633 38 1 4.1825 -2.8864 -0.6389 39 1 4.0436 -4.6305 -0.9846 40 1 2.4075 -4.6807 1.0518 41 1 4.1468 -4.5673 1.3791 42 1 2.9342 -3.0780 2.7698 43 1 3.9421 -2.1810 1.6189 44 1 1.0239 -2.7468 0.9969 45 1 1.4924 -1.3615 2.0148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593954476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:33 Heat of formation + Delta-G solvation = -70.787963 kcal Electronic energy + Delta-G solvation = -20851.739404 eV Core-core repulsion = 17867.799222 eV Total energy + Delta-G solvation = -2983.940182 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.28805 -38.43249 -35.38112 -34.18220 -32.57343 -32.15249 -31.04542 -27.77880 -26.93385 -25.14047 -24.67376 -23.26364 -20.77512 -20.48413 -19.45280 -18.64524 -16.84333 -16.50840 -16.05375 -15.87484 -15.03447 -14.84288 -14.40061 -14.37355 -13.93655 -13.66210 -13.26350 -13.20005 -12.72973 -12.52609 -12.38927 -12.25191 -12.14966 -11.74856 -11.47748 -11.32760 -11.02122 -10.89556 -10.77674 -10.61263 -10.58136 -10.52837 -10.51829 -10.41797 -9.63221 -9.56581 -9.20989 -8.97139 -8.55993 -8.29641 -5.95420 -3.96616 2.95679 3.10390 3.36476 3.42099 3.47224 4.31869 4.47349 4.51233 4.69657 4.83214 4.90967 4.94832 5.03711 5.13703 5.14625 5.21381 5.31227 5.38298 5.40709 5.52431 5.57641 5.66409 5.73805 5.76374 5.77881 5.82411 5.90045 5.94212 5.95324 6.01625 6.12251 6.20122 6.23671 6.31393 6.67087 6.76962 6.97897 7.19964 7.52991 7.73970 7.87051 8.05623 8.48046 8.50181 9.10524 9.67225 11.16134 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.040152 B = 0.003182 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.181895 B = 8796.431007 C = 9021.579056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.624 5.624 3 C 0.513 3.487 4 O -0.539 6.539 5 C -0.136 4.136 6 C -0.095 4.095 7 C 0.021 3.979 8 C -0.517 4.517 9 H 0.056 0.944 10 C 0.055 3.945 11 N -0.898 5.898 12 Si 0.892 3.108 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.273 1.273 16 C 0.139 3.861 17 C -0.127 4.127 18 C -0.113 4.113 19 C -0.123 4.123 20 C -0.116 4.116 21 C -0.118 4.118 22 C -0.124 4.124 23 H 0.054 0.946 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.015 0.985 31 H 0.015 0.985 32 H 0.259 0.741 33 H 0.099 0.901 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.917 -25.106 0.209 25.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.358 5.358 3 C 0.303 3.697 4 O -0.415 6.415 5 C -0.176 4.176 6 C -0.133 4.133 7 C -0.016 4.016 8 C -0.555 4.555 9 H 0.074 0.926 10 C -0.145 4.145 11 N -0.538 5.538 12 Si 0.720 3.280 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.198 1.198 16 C 0.036 3.964 17 C -0.166 4.166 18 C -0.151 4.151 19 C -0.160 4.160 20 C -0.154 4.154 21 C -0.156 4.156 22 C -0.162 4.162 23 H 0.073 0.927 24 H 0.095 0.905 25 H 0.086 0.914 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.033 0.967 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.117 0.883 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.392 -24.941 0.212 24.981 hybrid contribution 0.348 0.825 -0.032 0.896 sum -1.044 -24.116 0.180 24.139 Atomic orbital electron populations 1.21750 0.79978 1.03140 1.01802 1.48168 1.06805 1.05856 1.74998 1.21288 0.88283 0.85580 0.74515 1.90651 1.14333 1.87306 1.49216 1.21862 1.00306 0.91991 1.03453 1.21453 0.96778 0.93473 1.01618 1.19125 0.95406 0.90030 0.97063 1.21284 0.93267 0.90970 1.50021 0.92588 1.25020 0.95123 0.98968 0.95420 1.69967 1.12506 1.20022 1.51307 0.86593 0.81412 0.81933 0.78093 1.20685 1.21274 1.19830 1.20911 0.98656 0.82948 0.93934 1.22273 1.01738 0.94972 0.97575 1.21279 0.97612 0.95535 1.00644 1.21398 0.97579 1.01862 0.95196 1.20497 1.01493 0.97916 0.95476 1.20446 0.98342 0.97262 0.99587 1.21714 0.98168 0.98994 0.97322 0.92724 0.90531 0.91355 0.89477 0.89488 0.92765 0.92780 0.96659 0.96635 0.93096 0.88335 0.91744 0.91903 0.92187 0.92046 0.91315 0.91947 0.92261 0.92364 0.92111 0.91731 0.91513 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 9.51 59.84 0.57 1.30 16 2 N -0.62 -8.04 2.58 -174.75 -0.45 -8.49 16 3 C 0.51 8.73 7.67 -10.99 -0.08 8.64 16 4 O -0.54 -11.17 15.29 5.55 0.08 -11.09 16 5 C -0.14 -2.36 4.25 -27.88 -0.12 -2.47 16 6 C -0.10 -2.12 4.44 -26.73 -0.12 -2.24 16 7 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 8 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 9 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 10 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 11 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 12 Si 0.89 22.25 29.54 -169.99 -5.02 17.22 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 15 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 16 C 0.14 1.59 2.01 -68.64 -0.14 1.45 16 17 C -0.13 -1.22 5.39 -25.62 -0.14 -1.35 16 18 C -0.11 -0.87 5.31 -27.44 -0.15 -1.02 16 19 C -0.12 -0.97 5.61 -27.34 -0.15 -1.13 16 20 C -0.12 -0.88 5.26 -29.60 -0.16 -1.04 16 21 C -0.12 -1.05 5.26 -29.60 -0.16 -1.21 16 22 C -0.12 -1.17 4.73 -27.34 -0.13 -1.30 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.08 0.72 6.44 -51.93 -0.33 0.39 16 25 H 0.07 0.52 6.37 -51.93 -0.33 0.19 16 26 H 0.09 1.37 7.40 -51.93 -0.38 0.99 16 27 H 0.09 1.38 8.11 -51.93 -0.42 0.96 16 28 H 0.05 1.26 8.10 -51.93 -0.42 0.84 16 29 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.10 1.39 5.33 -51.93 -0.28 1.12 16 34 H 0.06 0.56 6.23 -51.93 -0.32 0.24 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.43 6.63 -51.93 -0.34 0.09 16 38 H 0.07 0.65 6.97 -51.93 -0.36 0.28 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.41 7.47 -51.93 -0.39 0.02 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.67 7.46 -51.93 -0.39 0.28 16 44 H 0.07 0.54 6.98 -51.93 -0.36 0.18 16 45 H 0.07 0.73 7.93 -51.93 -0.41 0.32 16 LS Contribution 341.74 15.07 5.15 5.15 Total: -1.00 -32.88 341.74 -8.91 -41.79 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -8.09 Total: -4.04 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -1.32 Total: -13.93 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.28 Total: -35.11 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.08 Total: -11.09 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.88 -8.91 -41.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593954476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.995 kcal (2) G-P(sol) polarization free energy of solvation -32.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds