Wall clock time and date at job start Mon Mar 30 2020 07:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34777 * 119.99952 * 2 1 4 4 O 1.21290 * 119.99694 * 180.02562 * 3 2 1 5 5 C 1.50693 * 120.00192 * 359.97438 * 3 2 1 6 6 C 1.53003 * 109.47438 * 180.02562 * 5 3 2 7 7 C 1.52995 * 109.47237 * 180.02562 * 6 5 3 8 8 C 1.50706 * 109.47150 * 179.97438 * 7 6 5 9 9 H 1.08003 * 119.99420 * 359.97438 * 8 7 6 10 10 C 1.37872 * 120.00024 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00076 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99764 * 180.02562 * 10 8 7 13 13 H 1.48492 * 109.47263 * 89.99876 * 12 10 8 14 14 H 1.48498 * 109.46896 * 210.00081 * 12 10 8 15 15 H 1.48496 * 109.47142 * 329.99576 * 12 10 8 16 16 C 1.46503 * 120.00148 * 179.97438 * 2 1 3 17 17 C 1.54065 * 108.87405 * 62.97576 * 16 2 1 18 18 C 1.54066 * 112.81762 * 197.50625 * 17 16 2 19 19 C 1.50470 * 112.49875 * 318.28617 * 18 17 16 20 20 C 1.54246 * 108.51998 * 94.14981 * 19 18 17 21 21 C 1.45537 * 112.40731 * 280.01038 * 20 19 18 22 22 C 1.50473 * 108.87630 * 300.00259 * 16 2 1 23 23 H 1.09000 * 109.47590 * 270.00596 * 1 2 3 24 24 H 1.08998 * 109.47131 * 30.00177 * 1 2 3 25 25 H 1.09000 * 109.47649 * 150.00386 * 1 2 3 26 26 H 1.08999 * 109.47638 * 300.00861 * 5 3 2 27 27 H 1.08999 * 109.46843 * 60.00866 * 5 3 2 28 28 H 1.09006 * 109.46846 * 300.00551 * 6 5 3 29 29 H 1.09003 * 109.46923 * 59.99980 * 6 5 3 30 30 H 1.08992 * 109.47298 * 299.99937 * 7 6 5 31 31 H 1.08999 * 109.47192 * 60.00414 * 7 6 5 32 32 H 0.97005 * 119.99532 * 179.97438 * 11 10 8 33 33 H 1.09002 * 108.85422 * 181.44123 * 16 2 1 34 34 H 1.09005 * 108.81720 * 318.37164 * 17 16 2 35 35 H 1.09004 * 108.81387 * 76.75411 * 17 16 2 36 36 H 1.08997 * 108.87949 * 197.51000 * 18 17 16 37 37 H 1.09001 * 108.87760 * 79.06417 * 18 17 16 38 38 H 1.09003 * 109.63195 * 334.43897 * 19 18 17 39 39 H 1.09001 * 109.62960 * 213.85940 * 19 18 17 40 40 H 1.09001 * 108.89247 * 40.76541 * 20 19 18 41 41 H 1.09004 * 108.89281 * 159.35535 * 20 19 18 42 42 H 1.09000 * 108.89458 * 182.68905 * 21 20 19 43 43 H 1.08995 * 108.89787 * 301.28165 * 21 20 19 44 44 H 1.09006 * 109.62936 * 95.21532 * 22 16 2 45 45 H 1.08998 * 109.78811 * 334.73047 * 22 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3796 3.6352 -0.0011 7 6 1.6146 4.9602 -0.0011 8 6 2.5939 6.1057 -0.0009 9 1 3.6558 5.9083 -0.0005 10 6 2.1343 7.4056 -0.0003 11 7 0.8413 7.6459 -0.0004 12 14 3.3483 8.8254 -0.0009 13 1 3.6690 9.2019 -1.4010 14 1 2.7489 9.9894 0.6998 15 1 4.5920 8.4136 0.6982 16 6 2.1975 -1.2687 0.0006 17 6 1.8731 -2.0321 -1.2977 18 6 2.2309 -3.5284 -1.2163 19 6 3.5507 -3.7686 -0.5348 20 6 3.2874 -4.0440 0.9599 21 6 3.0661 -2.8218 1.7185 22 6 1.8243 -2.0458 1.2339 23 1 -0.3634 0.0001 1.0276 24 1 -0.3633 0.8899 -0.5138 25 1 -0.3634 -0.8900 -0.5138 26 1 0.7589 2.5298 -0.8907 27 1 0.7585 2.5302 0.8892 28 1 3.0063 3.5778 0.8889 29 1 3.0063 3.5771 -0.8911 30 1 0.9877 5.0178 -0.8908 31 1 0.9883 5.0181 0.8892 32 1 0.5181 8.5605 0.0004 33 1 3.2667 -1.0581 0.0264 34 1 0.8072 -1.9363 -1.5050 35 1 2.4319 -1.5828 -2.1187 36 1 2.2763 -3.9357 -2.2263 37 1 1.4486 -4.0485 -0.6633 38 1 4.1825 -2.8864 -0.6389 39 1 4.0436 -4.6305 -0.9846 40 1 2.4075 -4.6807 1.0518 41 1 4.1468 -4.5673 1.3791 42 1 2.9342 -3.0780 2.7698 43 1 3.9421 -2.1810 1.6189 44 1 1.0239 -2.7468 0.9969 45 1 1.4924 -1.3615 2.0148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593954476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:32 Heat of formation + Delta-G solvation = -89.061454 kcal Electronic energy + Delta-G solvation = -20852.531802 eV Core-core repulsion = 17867.799222 eV Total energy + Delta-G solvation = -2984.732580 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.37640 -39.43469 -36.45516 -36.12686 -34.08855 -33.26058 -32.09898 -29.58162 -27.82579 -26.20532 -25.85467 -24.63615 -22.25553 -21.44172 -20.63322 -19.65777 -18.50488 -17.99572 -17.29275 -17.05232 -16.48646 -16.10152 -15.69656 -15.32245 -14.93325 -14.68275 -14.53841 -14.14460 -14.06549 -13.78510 -13.73805 -13.29097 -13.21961 -13.04180 -12.97135 -12.62851 -12.49974 -12.38088 -12.25155 -11.80840 -11.57826 -11.57345 -11.47813 -11.29208 -11.26144 -11.23560 -11.15025 -10.64643 -10.55269 -9.61681 -8.21164 -6.31257 1.38784 1.40075 1.51705 1.62857 2.03006 2.41096 3.11632 3.52002 3.78125 3.78631 4.01310 4.13141 4.17585 4.20278 4.21087 4.24220 4.35509 4.42157 4.49996 4.55192 4.65896 4.74928 4.83908 4.89064 4.94332 4.99007 5.04528 5.08932 5.09279 5.16743 5.18851 5.28984 5.31212 5.32827 5.41230 5.48533 5.52086 5.56013 5.69746 5.73681 5.85096 6.25895 6.39086 6.83694 7.20537 7.37383 8.90431 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.040152 B = 0.003182 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.181895 B = 8796.431007 C = 9021.579056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.613 5.613 3 C 0.510 3.490 4 O -0.589 6.589 5 C -0.126 4.126 6 C -0.082 4.082 7 C 0.028 3.972 8 C -0.549 4.549 9 H 0.050 0.950 10 C 0.004 3.996 11 N -0.929 5.929 12 Si 0.962 3.038 13 H -0.271 1.271 14 H -0.276 1.276 15 H -0.269 1.269 16 C 0.137 3.863 17 C -0.122 4.122 18 C -0.108 4.108 19 C -0.125 4.125 20 C -0.114 4.114 21 C -0.116 4.116 22 C -0.117 4.117 23 H 0.070 0.930 24 H 0.079 0.921 25 H 0.095 0.905 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.037 0.963 29 H 0.038 0.962 30 H 0.001 0.999 31 H 0.001 0.999 32 H 0.265 0.735 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.042 0.958 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.044 0.956 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.038 0.962 44 H 0.091 0.909 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.099 -26.663 0.224 26.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.346 5.346 3 C 0.300 3.700 4 O -0.469 6.469 5 C -0.166 4.166 6 C -0.120 4.120 7 C -0.009 4.009 8 C -0.587 4.587 9 H 0.068 0.932 10 C -0.194 4.194 11 N -0.569 5.569 12 Si 0.787 3.213 13 H -0.197 1.197 14 H -0.202 1.202 15 H -0.193 1.193 16 C 0.034 3.966 17 C -0.160 4.160 18 C -0.146 4.146 19 C -0.162 4.162 20 C -0.152 4.152 21 C -0.154 4.154 22 C -0.155 4.155 23 H 0.088 0.912 24 H 0.098 0.902 25 H 0.114 0.886 26 H 0.125 0.875 27 H 0.123 0.877 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.061 0.939 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.063 0.937 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.057 0.943 44 H 0.110 0.890 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.616 -26.540 0.226 26.669 hybrid contribution 0.682 1.280 -0.034 1.451 sum -1.934 -25.259 0.191 25.334 Atomic orbital electron populations 1.22067 0.77377 1.04735 1.03331 1.48211 1.08423 1.05106 1.72835 1.21158 0.87619 0.86636 0.74604 1.90635 1.16284 1.88031 1.51968 1.21685 0.99182 0.90434 1.05287 1.21167 0.97065 0.93738 1.00042 1.18998 0.94850 0.91528 0.95523 1.21688 0.93580 0.92584 1.50856 0.93199 1.25905 0.97134 1.01767 0.94621 1.70066 1.14262 1.21035 1.51519 0.85493 0.78946 0.78327 0.78580 1.19662 1.20155 1.19347 1.21034 0.96708 0.82644 0.96177 1.22236 1.02343 0.95968 0.95476 1.21269 0.97785 0.94008 1.01532 1.21411 0.97615 1.01313 0.95876 1.20481 1.02522 0.97337 0.94813 1.20438 0.97065 0.97401 1.00526 1.21664 0.99059 0.98987 0.95793 0.91177 0.90214 0.88603 0.87545 0.87668 0.94370 0.94334 0.98024 0.98037 0.92605 0.91827 0.90111 0.93931 0.91220 0.90243 0.93746 0.90713 0.90465 0.91871 0.91112 0.94302 0.89010 0.92140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.08 9.51 127.77 1.22 2.30 16 2 N -0.61 -15.27 2.58 -825.18 -2.13 -17.40 16 3 C 0.51 17.58 7.67 87.65 0.67 18.25 16 4 O -0.59 -25.63 15.29 -3.06 -0.05 -25.68 16 5 C -0.13 -4.36 4.25 29.85 0.13 -4.23 16 6 C -0.08 -3.77 4.44 30.59 0.14 -3.64 16 7 C 0.03 1.52 4.97 29.85 0.15 1.67 16 8 C -0.55 -32.97 9.11 25.60 0.23 -32.74 16 9 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 10 C 0.00 0.22 5.46 84.65 0.46 0.68 16 11 N -0.93 -56.89 13.29 21.45 0.28 -56.60 16 12 Si 0.96 45.76 29.54 68.60 2.03 47.79 16 13 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 14 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 15 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 16 C 0.14 3.07 2.01 44.53 0.09 3.16 16 17 C -0.12 -2.14 5.39 31.31 0.17 -1.98 16 18 C -0.11 -1.40 5.31 30.14 0.16 -1.24 16 19 C -0.12 -1.82 5.61 30.20 0.17 -1.65 16 20 C -0.11 -1.51 5.26 28.74 0.15 -1.35 16 21 C -0.12 -1.96 5.26 28.74 0.15 -1.81 16 22 C -0.12 -2.02 4.73 30.20 0.14 -1.88 16 23 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.08 1.28 6.44 -2.39 -0.02 1.27 16 25 H 0.10 1.07 6.37 -2.39 -0.02 1.05 16 26 H 0.11 3.25 7.40 -2.39 -0.02 3.24 16 27 H 0.11 3.24 8.11 -2.39 -0.02 3.22 16 28 H 0.04 1.84 8.10 -2.38 -0.02 1.82 16 29 H 0.04 1.85 8.10 -2.39 -0.02 1.83 16 30 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 31 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 32 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 33 H 0.06 1.91 5.33 -2.39 -0.01 1.90 16 34 H 0.08 1.16 6.23 -2.38 -0.01 1.14 16 35 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.08 0.79 6.63 -2.39 -0.02 0.77 16 38 H 0.04 0.87 6.97 -2.39 -0.02 0.85 16 39 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.08 0.78 7.47 -2.39 -0.02 0.76 16 41 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 42 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.04 0.85 7.46 -2.39 -0.02 0.83 16 44 H 0.09 1.15 6.98 -2.38 -0.02 1.13 16 45 H 0.06 1.17 7.93 -2.39 -0.02 1.15 16 Total: -1.00 -73.12 341.74 5.09 -68.03 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: 0.93 Total: 8.31 kcal Atomic # 6 Polarization: -28.48 SS G_CDS: 4.03 Total: -24.45 kcal Atomic # 7 Polarization: -72.16 SS G_CDS: -1.85 Total: -74.00 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.05 Total: -25.68 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -73.12 5.09 -68.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593954476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.032 kcal (2) G-P(sol) polarization free energy of solvation -73.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds