Wall clock time and date at job start Mon Mar 30 2020 06:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47135 * 2 1 4 4 C 1.34784 * 119.99790 * 270.00143 * 3 2 1 5 5 O 1.21281 * 119.99992 * 185.16204 * 4 3 2 6 6 C 1.50699 * 120.00194 * 5.15862 * 4 3 2 7 7 C 1.52992 * 109.47093 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.46878 * 179.97438 * 7 6 4 9 9 C 1.50709 * 109.47126 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99941 * 0.02562 * 9 8 7 11 11 C 1.37874 * 119.99838 * 179.97438 * 9 8 7 12 12 N 1.31509 * 120.00530 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99787 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47482 * 90.00139 * 13 11 9 15 15 H 1.48496 * 109.47275 * 210.00601 * 13 11 9 16 16 H 1.48501 * 109.47052 * 330.00173 * 13 11 9 17 17 C 1.46496 * 120.00370 * 90.00009 * 3 2 1 18 18 C 1.53777 * 113.61485 * 65.71297 * 17 3 2 19 19 C 1.53779 * 87.08352 * 219.93763 * 18 17 3 20 20 C 1.52994 * 113.61399 * 139.98064 * 19 18 17 21 21 C 1.52998 * 113.61468 * 270.79997 * 19 18 17 22 22 C 1.53777 * 87.17405 * 25.39136 * 19 18 17 23 23 H 1.08997 * 109.47017 * 300.00401 * 1 2 3 24 24 H 1.09004 * 109.46899 * 60.00131 * 1 2 3 25 25 H 1.09003 * 109.47384 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47017 * 239.99599 * 2 1 3 27 27 H 1.09004 * 109.46899 * 119.99869 * 2 1 3 28 28 H 1.09005 * 109.46843 * 300.00311 * 6 4 3 29 29 H 1.08996 * 109.46984 * 59.99990 * 6 4 3 30 30 H 1.08998 * 109.47553 * 299.99579 * 7 6 4 31 31 H 1.08996 * 109.47581 * 59.99905 * 7 6 4 32 32 H 1.08994 * 109.47539 * 299.99639 * 8 7 6 33 33 H 1.09004 * 109.47183 * 59.99917 * 8 7 6 34 34 H 0.96999 * 120.00450 * 179.97438 * 12 11 9 35 35 H 1.08996 * 112.84991 * 196.91495 * 17 3 2 36 36 H 1.09004 * 113.61246 * 105.38960 * 18 17 3 37 37 H 1.09003 * 113.61561 * 334.48955 * 18 17 3 38 38 H 1.09001 * 109.47443 * 181.52975 * 20 19 18 39 39 H 1.08999 * 109.47509 * 301.52738 * 20 19 18 40 40 H 1.08997 * 109.47260 * 61.53452 * 20 19 18 41 41 H 1.09000 * 109.47567 * 298.47168 * 21 19 18 42 42 H 1.09005 * 109.46947 * 58.47270 * 21 19 18 43 43 H 1.09002 * 109.47006 * 178.47101 * 21 19 18 44 44 H 1.08998 * 113.61774 * 89.15451 * 22 19 18 45 45 H 1.09000 * 113.61836 * 220.06474 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2429 2.0165 -1.1673 5 8 2.7351 3.1250 -1.1695 6 6 1.8826 1.3496 -2.4697 7 6 2.2380 2.2773 -3.6332 8 6 1.8727 1.5999 -4.9555 9 6 2.2221 2.5140 -6.1016 10 1 2.6612 3.4812 -5.9064 11 6 1.9822 2.1151 -7.3994 12 7 1.4481 0.9371 -7.6373 13 14 2.4160 3.2479 -8.8200 14 1 3.8094 2.9808 -9.2585 15 1 1.4855 3.0023 -9.9509 16 1 2.2979 4.6612 -8.3800 17 6 2.2625 2.0718 1.2686 18 6 3.4087 1.4610 2.0919 19 6 2.5392 1.7039 3.3367 20 6 2.5964 0.5645 4.3561 21 6 2.7486 3.0802 3.9715 22 6 1.3186 1.6351 2.4039 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.4385 0.4169 -2.5663 29 1 0.8134 1.1386 -2.4863 30 1 1.6824 3.2101 -3.5369 31 1 3.3072 2.4880 -3.6165 32 1 2.4286 0.6673 -5.0518 33 1 0.8034 1.3889 -4.9725 34 1 1.2790 0.6566 -8.5503 35 1 2.3349 3.1534 1.1546 36 1 4.3228 2.0546 2.0752 37 1 3.5840 0.4061 1.8808 38 1 1.9380 0.7933 5.1942 39 1 2.2734 -0.3628 3.8831 40 1 3.6184 0.4513 4.7176 41 1 3.7832 3.1747 4.3012 42 1 2.5286 3.8559 3.2380 43 1 2.0830 3.1904 4.8277 44 1 0.9213 0.6280 2.2781 45 1 0.5477 2.3691 2.6386 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594048974.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:42 Heat of formation + Delta-G solvation = -45.589931 kcal Electronic energy + Delta-G solvation = -20829.723961 eV Core-core repulsion = 17846.876448 eV Total energy + Delta-G solvation = -2982.847513 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.71865 -38.71844 -35.48380 -34.17457 -32.03985 -31.00478 -29.73366 -27.76979 -27.67182 -25.93660 -24.13062 -23.57650 -21.93617 -20.07060 -18.72061 -18.51184 -16.93582 -16.48943 -15.92055 -15.49464 -15.02045 -14.53238 -14.39173 -13.89158 -13.81140 -13.65995 -13.36859 -13.14664 -12.88897 -12.48873 -12.36509 -12.12179 -12.04709 -11.77315 -11.72707 -11.51143 -11.38482 -11.08174 -10.97994 -10.74975 -10.54288 -10.50427 -10.40904 -10.32692 -9.62671 -9.57362 -9.20523 -8.96671 -8.54219 -8.29589 -5.95320 -3.96526 2.93503 3.10366 3.36467 3.42107 3.47218 4.19794 4.28870 4.51234 4.53144 4.66735 4.81243 4.96166 4.97830 5.16857 5.24966 5.29934 5.33819 5.39376 5.40754 5.49824 5.55235 5.58980 5.62361 5.66128 5.68851 5.74071 5.75437 5.82404 5.89007 5.91028 6.05042 6.10580 6.26587 6.35209 6.68254 6.77338 6.98219 7.20123 7.55740 7.74117 7.87177 8.05703 8.48339 8.50324 9.10613 9.67312 11.16231 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.040625 B = 0.003287 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.070226 B = 8515.270070 C = 8953.544112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.105 3.895 3 N -0.611 5.611 4 C 0.515 3.485 5 O -0.538 6.538 6 C -0.138 4.138 7 C -0.095 4.095 8 C 0.021 3.979 9 C -0.517 4.517 10 H 0.056 0.944 11 C 0.055 3.945 12 N -0.898 5.898 13 Si 0.892 3.108 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.273 1.273 17 C 0.125 3.875 18 C -0.143 4.143 19 C -0.088 4.088 20 C -0.132 4.132 21 C -0.130 4.130 22 C -0.143 4.143 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.015 0.985 33 H 0.015 0.985 34 H 0.259 0.741 35 H 0.113 0.887 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.091 0.909 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.673 -3.841 24.590 24.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.018 4.018 3 N -0.345 5.345 4 C 0.305 3.695 5 O -0.414 6.414 6 C -0.177 4.177 7 C -0.133 4.133 8 C -0.016 4.016 9 C -0.555 4.555 10 H 0.074 0.926 11 C -0.145 4.145 12 N -0.538 5.538 13 Si 0.719 3.281 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.198 1.198 17 C 0.021 3.979 18 C -0.182 4.182 19 C -0.088 4.088 20 C -0.190 4.190 21 C -0.187 4.187 22 C -0.181 4.181 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.102 0.898 27 H 0.093 0.907 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.033 0.967 33 H 0.034 0.966 34 H 0.069 0.931 35 H 0.131 0.869 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.109 0.891 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.466 -3.346 24.418 24.650 hybrid contribution 0.141 0.384 -0.818 0.914 sum -0.325 -2.962 23.600 23.788 Atomic orbital electron populations 1.22353 0.95885 1.02336 1.02979 1.21490 0.94537 0.82652 1.03113 1.48083 1.66804 1.14043 1.05556 1.21284 0.76767 0.85904 0.85568 1.90655 1.42924 1.20434 1.87362 1.21904 1.02812 1.00925 0.92081 1.21452 1.00983 0.97414 0.93492 1.19125 0.96658 0.95764 0.90045 1.21285 1.40577 1.02595 0.91088 0.92594 1.25015 0.95331 0.95207 0.98957 1.69960 1.44221 1.19467 1.20151 0.86598 0.78187 0.81274 0.81996 1.20686 1.21271 1.19836 1.22483 0.95524 0.98229 0.81622 1.23541 0.98054 1.01650 0.94962 1.21642 0.97011 0.96182 0.94013 1.21689 1.01678 0.97170 0.98414 1.21617 1.01759 0.94846 1.00485 1.23684 0.96748 1.02535 0.95169 0.92152 0.91769 0.91565 0.89821 0.90696 0.89552 0.89393 0.92781 0.92782 0.96658 0.96649 0.93093 0.86898 0.91128 0.89847 0.92643 0.92609 0.92563 0.92283 0.92199 0.92381 0.89050 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.60 9.90 37.16 0.37 -1.24 16 2 C 0.11 1.03 5.04 -4.04 -0.02 1.01 16 3 N -0.61 -7.90 2.68 -165.08 -0.44 -8.34 16 4 C 0.51 8.78 7.66 -10.98 -0.08 8.69 16 5 O -0.54 -11.21 15.54 5.56 0.09 -11.12 16 6 C -0.14 -2.39 4.37 -27.89 -0.12 -2.51 16 7 C -0.10 -2.12 4.44 -26.73 -0.12 -2.24 16 8 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 9 C -0.52 -15.19 9.11 -34.44 -0.31 -15.51 16 10 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -27.35 13.29 55.43 0.74 -26.61 16 13 Si 0.89 22.25 29.54 -169.99 -5.02 17.23 16 14 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 16 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 17 C 0.13 1.45 3.77 -67.03 -0.25 1.19 16 18 C -0.14 -1.40 6.79 -25.92 -0.18 -1.58 16 19 C -0.09 -0.70 1.39 -153.70 -0.21 -0.92 16 20 C -0.13 -0.89 9.18 37.15 0.34 -0.55 16 21 C -0.13 -0.99 9.07 37.16 0.34 -0.66 16 22 C -0.14 -1.25 5.80 -25.83 -0.15 -1.40 16 23 H 0.06 0.52 6.16 -51.93 -0.32 0.20 16 24 H 0.06 0.69 6.93 -51.93 -0.36 0.33 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 0.82 6.48 -51.93 -0.34 0.49 16 27 H 0.07 0.60 6.40 -51.93 -0.33 0.26 16 28 H 0.09 1.37 7.25 -51.93 -0.38 0.99 16 29 H 0.09 1.41 6.93 -51.93 -0.36 1.05 16 30 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 31 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.11 1.54 6.87 -51.93 -0.36 1.18 16 36 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 37 H 0.08 0.78 7.28 -51.93 -0.38 0.40 16 38 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.05 0.36 7.98 -51.93 -0.41 -0.06 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.50 7.34 -51.93 -0.38 0.12 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.09 0.73 5.04 -51.93 -0.26 0.46 16 45 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 LS Contribution 349.44 15.07 5.27 5.27 Total: -1.00 -32.90 349.44 -8.08 -40.97 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -8.06 Total: -3.66 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -0.64 Total: -13.74 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 0.29 Total: -34.95 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.90 -8.08 -40.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594048974.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.615 kcal (2) G-P(sol) polarization free energy of solvation -32.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds