Wall clock time and date at job start Mon Mar 30 2020 06:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47135 * 2 1 4 4 C 1.34784 * 119.99790 * 270.00143 * 3 2 1 5 5 O 1.21281 * 119.99992 * 185.16204 * 4 3 2 6 6 C 1.50699 * 120.00194 * 5.15862 * 4 3 2 7 7 C 1.52992 * 109.47093 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.46878 * 179.97438 * 7 6 4 9 9 C 1.50709 * 109.47126 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99941 * 0.02562 * 9 8 7 11 11 C 1.37874 * 119.99838 * 179.97438 * 9 8 7 12 12 N 1.31509 * 120.00530 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99787 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47482 * 90.00139 * 13 11 9 15 15 H 1.48496 * 109.47275 * 210.00601 * 13 11 9 16 16 H 1.48501 * 109.47052 * 330.00173 * 13 11 9 17 17 C 1.46496 * 120.00370 * 90.00009 * 3 2 1 18 18 C 1.53777 * 113.61485 * 65.71297 * 17 3 2 19 19 C 1.53779 * 87.08352 * 219.93763 * 18 17 3 20 20 C 1.52994 * 113.61399 * 139.98064 * 19 18 17 21 21 C 1.52998 * 113.61468 * 270.79997 * 19 18 17 22 22 C 1.53777 * 87.17405 * 25.39136 * 19 18 17 23 23 H 1.08997 * 109.47017 * 300.00401 * 1 2 3 24 24 H 1.09004 * 109.46899 * 60.00131 * 1 2 3 25 25 H 1.09003 * 109.47384 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47017 * 239.99599 * 2 1 3 27 27 H 1.09004 * 109.46899 * 119.99869 * 2 1 3 28 28 H 1.09005 * 109.46843 * 300.00311 * 6 4 3 29 29 H 1.08996 * 109.46984 * 59.99990 * 6 4 3 30 30 H 1.08998 * 109.47553 * 299.99579 * 7 6 4 31 31 H 1.08996 * 109.47581 * 59.99905 * 7 6 4 32 32 H 1.08994 * 109.47539 * 299.99639 * 8 7 6 33 33 H 1.09004 * 109.47183 * 59.99917 * 8 7 6 34 34 H 0.96999 * 120.00450 * 179.97438 * 12 11 9 35 35 H 1.08996 * 112.84991 * 196.91495 * 17 3 2 36 36 H 1.09004 * 113.61246 * 105.38960 * 18 17 3 37 37 H 1.09003 * 113.61561 * 334.48955 * 18 17 3 38 38 H 1.09001 * 109.47443 * 181.52975 * 20 19 18 39 39 H 1.08999 * 109.47509 * 301.52738 * 20 19 18 40 40 H 1.08997 * 109.47260 * 61.53452 * 20 19 18 41 41 H 1.09000 * 109.47567 * 298.47168 * 21 19 18 42 42 H 1.09005 * 109.46947 * 58.47270 * 21 19 18 43 43 H 1.09002 * 109.47006 * 178.47101 * 21 19 18 44 44 H 1.08998 * 113.61774 * 89.15451 * 22 19 18 45 45 H 1.09000 * 113.61836 * 220.06474 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2429 2.0165 -1.1673 5 8 2.7351 3.1250 -1.1695 6 6 1.8826 1.3496 -2.4697 7 6 2.2380 2.2773 -3.6332 8 6 1.8727 1.5999 -4.9555 9 6 2.2221 2.5140 -6.1016 10 1 2.6612 3.4812 -5.9064 11 6 1.9822 2.1151 -7.3994 12 7 1.4481 0.9371 -7.6373 13 14 2.4160 3.2479 -8.8200 14 1 3.8094 2.9808 -9.2585 15 1 1.4855 3.0023 -9.9509 16 1 2.2979 4.6612 -8.3800 17 6 2.2625 2.0718 1.2686 18 6 3.4087 1.4610 2.0919 19 6 2.5392 1.7039 3.3367 20 6 2.5964 0.5645 4.3561 21 6 2.7486 3.0802 3.9715 22 6 1.3186 1.6351 2.4039 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.4385 0.4169 -2.5663 29 1 0.8134 1.1386 -2.4863 30 1 1.6824 3.2101 -3.5369 31 1 3.3072 2.4880 -3.6165 32 1 2.4286 0.6673 -5.0518 33 1 0.8034 1.3889 -4.9725 34 1 1.2790 0.6566 -8.5503 35 1 2.3349 3.1534 1.1546 36 1 4.3228 2.0546 2.0752 37 1 3.5840 0.4061 1.8808 38 1 1.9380 0.7933 5.1942 39 1 2.2734 -0.3628 3.8831 40 1 3.6184 0.4513 4.7176 41 1 3.7832 3.1747 4.3012 42 1 2.5286 3.8559 3.2380 43 1 2.0830 3.1904 4.8277 44 1 0.9213 0.6280 2.2781 45 1 0.5477 2.3691 2.6386 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594048974.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:41 Heat of formation + Delta-G solvation = -63.913992 kcal Electronic energy + Delta-G solvation = -20830.518552 eV Core-core repulsion = 17846.876448 eV Total energy + Delta-G solvation = -2983.642104 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.69124 -39.85954 -36.52992 -36.15192 -34.02566 -31.85023 -30.74880 -29.45947 -28.28320 -26.69325 -26.00926 -24.40594 -23.29932 -21.75980 -19.88627 -19.24764 -18.50009 -18.05228 -17.27097 -16.78959 -16.46963 -15.88190 -15.42105 -15.10310 -14.91287 -14.63963 -14.27621 -14.16150 -13.98373 -13.72692 -13.67107 -13.49423 -13.15237 -12.91089 -12.72881 -12.68228 -12.49085 -12.39440 -12.33613 -12.18521 -11.97961 -11.68414 -11.53763 -11.46232 -11.25826 -11.20005 -11.04527 -10.61680 -10.55263 -9.60106 -8.21051 -6.31199 1.38780 1.40053 1.51659 1.60500 2.03100 2.41084 3.11703 3.47094 3.52352 3.71184 3.83305 3.89180 4.05712 4.17047 4.18358 4.34215 4.42153 4.53171 4.57130 4.59405 4.72457 4.74857 4.84423 4.87355 4.90898 4.93071 4.95360 5.00357 5.05387 5.07482 5.15877 5.16905 5.20743 5.23654 5.40646 5.46978 5.52131 5.55212 5.72805 5.73790 5.85056 6.26078 6.41834 6.83700 7.20072 7.37436 8.90557 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.040625 B = 0.003287 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.070226 B = 8515.270070 C = 8953.544112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.096 3.904 3 N -0.599 5.599 4 C 0.512 3.488 5 O -0.587 6.587 6 C -0.128 4.128 7 C -0.082 4.082 8 C 0.029 3.971 9 C -0.549 4.549 10 H 0.050 0.950 11 C 0.004 3.996 12 N -0.929 5.929 13 Si 0.962 3.038 14 H -0.271 1.271 15 H -0.276 1.276 16 H -0.269 1.269 17 C 0.108 3.892 18 C -0.140 4.140 19 C -0.078 4.078 20 C -0.129 4.129 21 C -0.132 4.132 22 C -0.130 4.130 23 H 0.066 0.934 24 H 0.043 0.957 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.037 0.963 31 H 0.038 0.962 32 H 0.001 0.999 33 H 0.001 0.999 34 H 0.265 0.735 35 H 0.084 0.916 36 H 0.057 0.943 37 H 0.093 0.907 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.044 0.956 43 H 0.071 0.929 44 H 0.107 0.893 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.015 -5.024 25.950 26.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.025 4.025 3 N -0.331 5.331 4 C 0.302 3.698 5 O -0.468 6.468 6 C -0.167 4.167 7 C -0.120 4.120 8 C -0.008 4.008 9 C -0.587 4.587 10 H 0.068 0.932 11 C -0.194 4.194 12 N -0.569 5.569 13 Si 0.786 3.214 14 H -0.196 1.196 15 H -0.202 1.202 16 H -0.194 1.194 17 C 0.005 3.995 18 C -0.179 4.179 19 C -0.079 4.079 20 C -0.187 4.187 21 C -0.189 4.189 22 C -0.168 4.168 23 H 0.085 0.915 24 H 0.062 0.938 25 H 0.107 0.893 26 H 0.104 0.896 27 H 0.121 0.879 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.020 0.980 33 H 0.019 0.981 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.112 0.888 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.090 0.910 44 H 0.126 0.874 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.824 -4.568 25.821 26.235 hybrid contribution 0.236 0.718 -1.203 1.420 sum -0.588 -3.850 24.618 24.924 Atomic orbital electron populations 1.22325 0.94955 1.03627 1.02306 1.21813 0.95288 0.80741 1.04671 1.48112 1.65124 1.15058 1.04769 1.21136 0.76685 0.85353 0.86606 1.90634 1.45561 1.22489 1.88087 1.21726 1.04049 1.00289 0.90648 1.21165 0.99641 0.97466 0.93733 1.18994 0.95308 0.95007 0.91531 1.21687 1.41320 1.03014 0.92692 0.93190 1.25899 0.94897 0.96842 1.01755 1.70059 1.44650 1.20993 1.21169 0.85498 0.78388 0.79108 0.78378 1.19649 1.20153 1.19359 1.22662 0.98275 0.96977 0.81632 1.23548 0.97115 1.01743 0.95501 1.21603 0.95590 0.96965 0.93742 1.21676 1.02214 0.96609 0.98166 1.21641 1.02329 0.94369 1.00568 1.23656 0.96586 1.03243 0.93323 0.91532 0.93759 0.89287 0.89629 0.87854 0.87655 0.87832 0.94379 0.94266 0.98024 0.98103 0.92598 0.89755 0.92374 0.88808 0.91706 0.91759 0.92276 0.91985 0.93638 0.91025 0.87439 0.90980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 9.90 71.98 0.71 -1.99 16 2 C 0.10 1.65 5.04 86.38 0.44 2.09 16 3 N -0.60 -15.01 2.68 -794.59 -2.13 -17.14 16 4 C 0.51 17.73 7.66 87.66 0.67 18.40 16 5 O -0.59 -25.56 15.54 -3.03 -0.05 -25.61 16 6 C -0.13 -4.45 4.37 29.85 0.13 -4.32 16 7 C -0.08 -3.78 4.44 30.59 0.14 -3.64 16 8 C 0.03 1.56 4.97 29.85 0.15 1.71 16 9 C -0.55 -32.98 9.11 25.60 0.23 -32.75 16 10 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 11 C 0.00 0.24 5.46 84.65 0.46 0.70 16 12 N -0.93 -56.87 13.29 21.45 0.28 -56.58 16 13 Si 0.96 45.75 29.54 68.60 2.03 47.78 16 14 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 15 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 16 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 17 C 0.11 2.44 3.77 45.58 0.17 2.61 16 18 C -0.14 -2.57 6.79 31.12 0.21 -2.36 16 19 C -0.08 -1.10 1.39 -51.66 -0.07 -1.17 16 20 C -0.13 -1.31 9.18 71.98 0.66 -0.65 16 21 C -0.13 -1.86 9.07 71.98 0.65 -1.21 16 22 C -0.13 -2.00 5.80 31.18 0.18 -1.81 16 23 H 0.07 0.96 6.16 -2.39 -0.01 0.94 16 24 H 0.04 0.88 6.93 -2.38 -0.02 0.86 16 25 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.09 1.48 6.48 -2.39 -0.02 1.46 16 27 H 0.10 1.24 6.40 -2.38 -0.02 1.22 16 28 H 0.11 3.26 7.25 -2.38 -0.02 3.24 16 29 H 0.10 3.28 6.93 -2.39 -0.02 3.27 16 30 H 0.04 1.84 8.10 -2.39 -0.02 1.82 16 31 H 0.04 1.89 8.10 -2.39 -0.02 1.87 16 32 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 33 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 34 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 35 H 0.08 2.41 6.87 -2.39 -0.02 2.40 16 36 H 0.06 1.21 8.10 -2.38 -0.02 1.19 16 37 H 0.09 1.52 7.28 -2.39 -0.02 1.50 16 38 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.06 0.56 7.98 -2.39 -0.02 0.54 16 40 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.04 0.77 7.34 -2.38 -0.02 0.75 16 43 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.11 1.32 5.04 -2.39 -0.01 1.30 16 45 H 0.07 1.12 8.10 -2.39 -0.02 1.10 16 Total: -1.00 -72.58 349.44 5.81 -66.78 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: 0.94 Total: 9.17 kcal Atomic # 6 Polarization: -29.13 SS G_CDS: 4.74 Total: -24.39 kcal Atomic # 7 Polarization: -71.88 SS G_CDS: -1.84 Total: -73.73 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.05 Total: -25.61 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -72.58 5.81 -66.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594048974.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.862 kcal (2) G-P(sol) polarization free energy of solvation -72.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds