Wall clock time and date at job start Mon Mar 30 2020 08:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42891 * 113.99951 * 2 1 4 4 H 1.09001 * 109.47098 * 30.00907 * 3 2 1 5 5 C 1.53008 * 109.47290 * 150.00157 * 3 2 1 6 6 N 1.46503 * 109.46733 * 300.00616 * 5 3 2 7 7 C 1.36939 * 119.99592 * 269.99516 * 6 5 3 8 8 H 1.08001 * 119.99678 * 141.40327 * 7 6 5 9 9 C 1.38807 * 120.00076 * 321.39632 * 7 6 5 10 10 N 1.31619 * 120.00153 * 339.54945 * 9 7 6 11 11 Si 1.86804 * 119.99952 * 159.54380 * 9 7 6 12 12 H 1.48504 * 109.46973 * 90.00602 * 11 9 7 13 13 H 1.48502 * 109.47243 * 210.00402 * 11 9 7 14 14 H 1.48499 * 109.47023 * 330.00566 * 11 9 7 15 15 C 1.46497 * 120.00364 * 89.99717 * 6 5 3 16 16 C 1.55238 * 110.58403 * 238.22481 * 15 6 5 17 17 C 1.54892 * 102.58863 * 203.34015 * 16 15 6 18 18 C 1.54262 * 104.31419 * 37.92746 * 17 16 15 19 19 C 1.53883 * 106.60160 * 336.32624 * 18 17 16 20 20 C 1.52994 * 109.47726 * 270.00269 * 3 2 1 21 21 C 1.53784 * 113.62026 * 159.13800 * 20 3 2 22 22 C 1.53956 * 87.01906 * 220.04922 * 21 20 3 23 23 C 1.53778 * 113.61363 * 61.52599 * 20 3 2 24 24 H 1.09002 * 109.47078 * 59.99609 * 1 2 3 25 25 H 1.09004 * 109.46964 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47261 * 299.99394 * 1 2 3 27 27 H 1.08995 * 109.47300 * 180.02562 * 5 3 2 28 28 H 1.08999 * 109.46895 * 59.99742 * 5 3 2 29 29 H 0.97003 * 120.00150 * 179.97438 * 10 9 7 30 30 H 1.09006 * 110.43490 * 0.80575 * 15 6 5 31 31 H 1.08994 * 110.90103 * 85.03993 * 16 15 6 32 32 H 1.09005 * 110.75906 * 321.56798 * 16 15 6 33 33 H 1.08998 * 110.48306 * 279.18351 * 17 16 15 34 34 H 1.08993 * 110.48296 * 156.67603 * 17 16 15 35 35 H 1.08997 * 110.03299 * 95.60878 * 18 17 16 36 36 H 1.09002 * 110.03351 * 216.99424 * 18 17 16 37 37 H 1.08995 * 110.03293 * 119.28405 * 19 18 17 38 38 H 1.08996 * 110.02936 * 240.67297 * 19 18 17 39 39 H 1.09001 * 112.84932 * 290.33579 * 20 3 2 40 40 H 1.09004 * 113.60744 * 334.56797 * 21 20 3 41 41 H 1.09001 * 113.61706 * 105.46645 * 21 20 3 42 42 H 1.08996 * 113.53442 * 270.80929 * 22 21 20 43 43 H 1.08998 * 113.74067 * 139.94410 * 22 21 20 44 44 H 1.08994 * 113.61879 * 254.52907 * 23 20 3 45 45 H 1.09005 * 113.61275 * 25.44102 * 23 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5140 5 6 3.3589 1.2632 0.7212 6 7 3.1603 0.8170 2.1024 7 6 2.9196 1.7342 3.0904 8 1 2.2109 1.5103 3.8740 9 6 3.5866 2.9515 3.0847 10 7 4.7081 3.0843 2.4087 11 14 2.8924 4.4013 4.0364 12 1 3.4360 4.3922 5.4183 13 1 3.2775 5.6667 3.3613 14 1 1.4119 4.2975 4.0861 15 6 3.2192 -0.6105 2.4267 16 6 1.8892 -1.0777 3.0769 17 6 2.3246 -2.3350 3.8699 18 6 3.7157 -1.9709 4.4284 19 6 4.2846 -0.8744 3.5107 20 6 2.2176 1.7714 -1.4424 21 6 2.3476 3.2972 -1.5843 22 6 1.4919 3.1710 -2.8579 23 6 0.9120 1.8843 -2.2470 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 3.8020 2.2590 0.7216 28 1 4.0242 0.5693 0.2074 29 1 5.1740 3.9351 2.4044 30 1 3.4322 -1.1955 1.5320 31 1 1.1540 -1.3368 2.3151 32 1 1.4981 -0.3135 3.7486 33 1 2.3931 -3.1985 3.2083 34 1 1.6269 -2.5333 4.6835 35 1 3.6223 -1.5940 5.4468 36 1 4.3653 -2.8461 4.4125 37 1 4.4672 0.0346 4.0839 38 1 5.2108 -1.2170 3.0494 39 1 3.0016 1.2166 -1.9579 40 1 1.8597 3.8532 -0.7837 41 1 3.3672 3.6328 -1.7736 42 1 2.0780 3.0001 -3.7608 43 1 0.7580 3.9684 -2.9742 44 1 0.7743 1.0811 -2.9708 45 1 0.0309 2.0534 -1.6280 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595329105.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:47:17 Heat of formation + Delta-G solvation = -20.276104 kcal Electronic energy + Delta-G solvation = -22395.249035 eV Core-core repulsion = 19413.499212 eV Total energy + Delta-G solvation = -2981.749823 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.10782 -37.45169 -36.14820 -34.17327 -31.10915 -29.42016 -27.70772 -26.35156 -25.87611 -25.23681 -24.92324 -22.45533 -20.38926 -19.67596 -19.11210 -18.95520 -16.26910 -15.99487 -15.41657 -15.06422 -14.81999 -14.63020 -14.15845 -14.06793 -13.26196 -13.03095 -12.72701 -12.41060 -12.31823 -11.96305 -11.64938 -11.40924 -11.25470 -11.11294 -10.83185 -10.63318 -10.57620 -10.46122 -10.35340 -10.21906 -10.15832 -10.02548 -9.95020 -9.78397 -9.57060 -9.53610 -9.27537 -8.56066 -8.40549 -6.39643 -5.71539 -3.29466 3.35684 3.43992 3.46623 4.50881 4.53771 4.97600 5.03840 5.07310 5.30421 5.38866 5.45291 5.55898 5.60865 5.75990 5.79664 5.84249 5.93384 5.98466 6.06122 6.10884 6.15190 6.22872 6.31201 6.34433 6.35567 6.43049 6.43681 6.53357 6.56018 6.69541 6.72303 6.75905 6.83001 6.89900 7.00942 7.07094 7.18794 7.32255 7.53719 7.65960 7.91207 8.09869 8.61541 9.28907 9.92439 10.53509 11.26791 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.013622 B = 0.008888 C = 0.006206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.992531 B = 3149.645361 C = 4510.840363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.372 6.372 3 C 0.081 3.919 4 H 0.055 0.945 5 C 0.155 3.845 6 N -0.571 5.571 7 C -0.247 4.247 8 H 0.058 0.942 9 C 0.011 3.989 10 N -0.888 5.888 11 Si 0.888 3.112 12 H -0.287 1.287 13 H -0.290 1.290 14 H -0.280 1.280 15 C 0.183 3.817 16 C -0.129 4.129 17 C -0.123 4.123 18 C -0.119 4.119 19 C -0.136 4.136 20 C -0.126 4.126 21 C -0.129 4.129 22 C -0.144 4.144 23 C -0.137 4.137 24 H 0.035 0.965 25 H 0.068 0.932 26 H 0.034 0.966 27 H 0.106 0.894 28 H 0.026 0.974 29 H 0.253 0.747 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.046 0.954 37 H 0.081 0.919 38 H 0.041 0.959 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.902 -4.291 -5.935 9.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.291 6.291 3 C 0.021 3.979 4 H 0.073 0.927 5 C 0.028 3.972 6 N -0.288 5.288 7 C -0.377 4.377 8 H 0.076 0.924 9 C -0.188 4.188 10 N -0.531 5.531 11 Si 0.718 3.282 12 H -0.214 1.214 13 H -0.216 1.216 14 H -0.205 1.205 15 C 0.076 3.924 16 C -0.168 4.168 17 C -0.161 4.161 18 C -0.157 4.157 19 C -0.175 4.175 20 C -0.145 4.145 21 C -0.167 4.167 22 C -0.182 4.182 23 C -0.175 4.175 24 H 0.053 0.947 25 H 0.087 0.913 26 H 0.053 0.947 27 H 0.123 0.877 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.099 0.901 38 H 0.060 0.940 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.644 -4.301 -5.948 9.259 hybrid contribution -0.549 1.063 0.505 1.299 sum -6.193 -3.238 -5.443 8.858 Atomic orbital electron populations 1.22755 0.83664 1.01029 0.99279 1.87891 1.17515 1.28910 1.94741 1.23139 0.99070 0.83529 0.92148 0.92739 1.21079 0.90360 1.02237 0.83480 1.43696 1.82238 1.00183 1.02706 1.18900 1.17215 0.95556 1.06010 0.92426 1.25162 0.94744 0.99925 0.98998 1.69976 1.14178 1.24314 1.44602 0.86538 0.79061 0.82827 0.79807 1.21356 1.21590 1.20519 1.21175 0.91258 0.85887 0.94106 1.22874 0.99572 0.95693 0.98703 1.22288 0.96597 0.98412 0.98843 1.22061 0.96173 0.98286 0.99225 1.22577 0.98290 0.98340 0.98309 1.23026 0.97462 0.96259 0.97743 1.22866 1.00189 0.96362 0.97257 1.22881 0.99496 0.98020 0.97759 1.22963 0.97877 0.97409 0.99216 0.94698 0.91348 0.94741 0.87684 0.95536 0.93694 0.92968 0.92824 0.91630 0.92858 0.93280 0.92970 0.93557 0.90070 0.94026 0.89512 0.90153 0.91487 0.90710 0.92142 0.92110 0.90466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.58 101.05 1.07 1.54 16 2 O -0.37 -7.09 9.51 -35.23 -0.34 -7.42 16 3 C 0.08 1.59 2.28 -26.73 -0.06 1.53 16 4 H 0.05 1.17 7.62 -51.93 -0.40 0.77 16 5 C 0.16 3.57 4.98 -4.04 -0.02 3.55 16 6 N -0.57 -13.74 2.38 -163.56 -0.39 -14.13 16 7 C -0.25 -6.45 7.80 -15.06 -0.12 -6.57 16 8 H 0.06 1.54 6.63 -52.49 -0.35 1.20 16 9 C 0.01 0.31 4.97 -17.43 -0.09 0.22 16 10 N -0.89 -24.65 11.48 55.49 0.64 -24.02 16 11 Si 0.89 21.14 29.60 -169.99 -5.03 16.11 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 C 0.18 3.97 2.83 -66.08 -0.19 3.78 16 16 C -0.13 -2.51 6.46 -24.55 -0.16 -2.67 16 17 C -0.12 -2.06 6.82 -25.07 -0.17 -2.23 16 18 C -0.12 -2.08 6.80 -25.61 -0.17 -2.26 16 19 C -0.14 -2.85 6.42 -25.61 -0.16 -3.01 16 20 C -0.13 -2.08 3.34 -89.81 -0.30 -2.38 16 21 C -0.13 -2.03 7.63 -25.82 -0.20 -2.23 16 22 C -0.14 -1.89 8.09 -25.82 -0.21 -2.10 16 23 C -0.14 -1.93 6.14 -25.92 -0.16 -2.09 16 24 H 0.03 0.49 5.04 -51.93 -0.26 0.23 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.03 0.56 8.08 -51.93 -0.42 0.14 16 27 H 0.11 2.68 5.55 -51.93 -0.29 2.39 16 28 H 0.03 0.61 7.94 -51.93 -0.41 0.20 16 29 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.05 1.14 7.85 -51.93 -0.41 0.73 16 31 H 0.05 1.02 8.00 -51.93 -0.42 0.60 16 32 H 0.07 1.40 6.53 -51.93 -0.34 1.06 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 1.97 6.99 -51.93 -0.36 1.60 16 38 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.08 1.35 7.99 -51.93 -0.41 0.94 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.08 1.09 6.49 -51.93 -0.34 0.75 16 LS Contribution 342.04 15.07 5.15 5.15 Total: -1.00 -27.00 342.04 -9.09 -36.09 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -8.19 Total: 3.15 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: -0.94 Total: -14.93 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.25 Total: -38.15 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: -0.34 Total: -7.42 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -27.00 -9.09 -36.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595329105.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.810 kcal (2) G-P(sol) polarization free energy of solvation -26.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds