Wall clock time and date at job start Mon Mar 30 2020 08:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42891 * 113.99951 * 2 1 4 4 H 1.09001 * 109.47098 * 30.00907 * 3 2 1 5 5 C 1.53008 * 109.47290 * 150.00157 * 3 2 1 6 6 N 1.46503 * 109.46733 * 300.00616 * 5 3 2 7 7 C 1.36939 * 119.99592 * 269.99516 * 6 5 3 8 8 H 1.08001 * 119.99678 * 141.40327 * 7 6 5 9 9 C 1.38807 * 120.00076 * 321.39632 * 7 6 5 10 10 N 1.31619 * 120.00153 * 339.54945 * 9 7 6 11 11 Si 1.86804 * 119.99952 * 159.54380 * 9 7 6 12 12 H 1.48504 * 109.46973 * 90.00602 * 11 9 7 13 13 H 1.48502 * 109.47243 * 210.00402 * 11 9 7 14 14 H 1.48499 * 109.47023 * 330.00566 * 11 9 7 15 15 C 1.46497 * 120.00364 * 89.99717 * 6 5 3 16 16 C 1.55238 * 110.58403 * 238.22481 * 15 6 5 17 17 C 1.54892 * 102.58863 * 203.34015 * 16 15 6 18 18 C 1.54262 * 104.31419 * 37.92746 * 17 16 15 19 19 C 1.53883 * 106.60160 * 336.32624 * 18 17 16 20 20 C 1.52994 * 109.47726 * 270.00269 * 3 2 1 21 21 C 1.53784 * 113.62026 * 159.13800 * 20 3 2 22 22 C 1.53956 * 87.01906 * 220.04922 * 21 20 3 23 23 C 1.53778 * 113.61363 * 61.52599 * 20 3 2 24 24 H 1.09002 * 109.47078 * 59.99609 * 1 2 3 25 25 H 1.09004 * 109.46964 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47261 * 299.99394 * 1 2 3 27 27 H 1.08995 * 109.47300 * 180.02562 * 5 3 2 28 28 H 1.08999 * 109.46895 * 59.99742 * 5 3 2 29 29 H 0.97003 * 120.00150 * 179.97438 * 10 9 7 30 30 H 1.09006 * 110.43490 * 0.80575 * 15 6 5 31 31 H 1.08994 * 110.90103 * 85.03993 * 16 15 6 32 32 H 1.09005 * 110.75906 * 321.56798 * 16 15 6 33 33 H 1.08998 * 110.48306 * 279.18351 * 17 16 15 34 34 H 1.08993 * 110.48296 * 156.67603 * 17 16 15 35 35 H 1.08997 * 110.03299 * 95.60878 * 18 17 16 36 36 H 1.09002 * 110.03351 * 216.99424 * 18 17 16 37 37 H 1.08995 * 110.03293 * 119.28405 * 19 18 17 38 38 H 1.08996 * 110.02936 * 240.67297 * 19 18 17 39 39 H 1.09001 * 112.84932 * 290.33579 * 20 3 2 40 40 H 1.09004 * 113.60744 * 334.56797 * 21 20 3 41 41 H 1.09001 * 113.61706 * 105.46645 * 21 20 3 42 42 H 1.08996 * 113.53442 * 270.80929 * 22 21 20 43 43 H 1.08998 * 113.74067 * 139.94410 * 22 21 20 44 44 H 1.08994 * 113.61879 * 254.52907 * 23 20 3 45 45 H 1.09005 * 113.61275 * 25.44102 * 23 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5140 5 6 3.3589 1.2632 0.7212 6 7 3.1603 0.8170 2.1024 7 6 2.9196 1.7342 3.0904 8 1 2.2109 1.5103 3.8740 9 6 3.5866 2.9515 3.0847 10 7 4.7081 3.0843 2.4087 11 14 2.8924 4.4013 4.0364 12 1 3.4360 4.3922 5.4183 13 1 3.2775 5.6667 3.3613 14 1 1.4119 4.2975 4.0861 15 6 3.2192 -0.6105 2.4267 16 6 1.8892 -1.0777 3.0769 17 6 2.3246 -2.3350 3.8699 18 6 3.7157 -1.9709 4.4284 19 6 4.2846 -0.8744 3.5107 20 6 2.2176 1.7714 -1.4424 21 6 2.3476 3.2972 -1.5843 22 6 1.4919 3.1710 -2.8579 23 6 0.9120 1.8843 -2.2470 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 3.8020 2.2590 0.7216 28 1 4.0242 0.5693 0.2074 29 1 5.1740 3.9351 2.4044 30 1 3.4322 -1.1955 1.5320 31 1 1.1540 -1.3368 2.3151 32 1 1.4981 -0.3135 3.7486 33 1 2.3931 -3.1985 3.2083 34 1 1.6269 -2.5333 4.6835 35 1 3.6223 -1.5940 5.4468 36 1 4.3653 -2.8461 4.4125 37 1 4.4672 0.0346 4.0839 38 1 5.2108 -1.2170 3.0494 39 1 3.0016 1.2166 -1.9579 40 1 1.8597 3.8532 -0.7837 41 1 3.3672 3.6328 -1.7736 42 1 2.0780 3.0001 -3.7608 43 1 0.7580 3.9684 -2.9742 44 1 0.7743 1.0811 -2.9708 45 1 0.0309 2.0534 -1.6280 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595329105.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:47:16 Heat of formation + Delta-G solvation = -33.066131 kcal Electronic energy + Delta-G solvation = -22395.803652 eV Core-core repulsion = 19413.499212 eV Total energy + Delta-G solvation = -2982.304440 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.49214 -39.06928 -37.54404 -35.96850 -33.05705 -30.99849 -29.29445 -28.05331 -27.18058 -26.77427 -26.34190 -24.10043 -22.02065 -21.21788 -20.71601 -20.32862 -18.15413 -17.50788 -16.96161 -16.72897 -16.29259 -16.02849 -15.87077 -15.64566 -14.81459 -14.46442 -14.43831 -14.00828 -13.66350 -13.31838 -13.19858 -12.95385 -12.85757 -12.75524 -12.64397 -12.28456 -12.13631 -12.08648 -11.87299 -11.79776 -11.71789 -11.68795 -11.39552 -11.19699 -11.13008 -11.05641 -10.97045 -10.44694 -10.01261 -8.38275 -7.73034 -5.35796 1.42635 1.46167 1.53943 2.52699 3.11351 3.28741 3.60620 3.80491 3.87443 3.94384 4.05852 4.07078 4.13073 4.32996 4.36054 4.59281 4.63959 4.73395 4.77737 4.80056 4.82637 4.86045 4.88286 4.94264 4.95875 4.99240 5.03189 5.05296 5.08759 5.14417 5.23691 5.29581 5.33584 5.36498 5.41802 5.60770 5.61461 5.65763 5.72254 5.74635 5.87020 6.55166 6.62046 7.26612 7.98221 8.53472 9.20487 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.013622 B = 0.008888 C = 0.006206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.992531 B = 3149.645361 C = 4510.840363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.387 6.387 3 C 0.099 3.901 4 H 0.031 0.969 5 C 0.157 3.843 6 N -0.583 5.583 7 C -0.243 4.243 8 H 0.049 0.951 9 C -0.033 4.033 10 N -0.916 5.916 11 Si 0.943 3.057 12 H -0.287 1.287 13 H -0.291 1.291 14 H -0.275 1.275 15 C 0.176 3.824 16 C -0.120 4.120 17 C -0.113 4.113 18 C -0.113 4.113 19 C -0.134 4.134 20 C -0.131 4.131 21 C -0.138 4.138 22 C -0.126 4.126 23 C -0.127 4.127 24 H 0.054 0.946 25 H 0.091 0.909 26 H 0.022 0.978 27 H 0.078 0.922 28 H 0.016 0.984 29 H 0.249 0.751 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.041 0.959 38 H 0.038 0.962 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.552 -5.533 -6.680 11.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.306 6.306 3 C 0.039 3.961 4 H 0.050 0.950 5 C 0.031 3.969 6 N -0.301 5.301 7 C -0.374 4.374 8 H 0.067 0.933 9 C -0.230 4.230 10 N -0.560 5.560 11 Si 0.771 3.229 12 H -0.214 1.214 13 H -0.217 1.217 14 H -0.200 1.200 15 C 0.069 3.931 16 C -0.159 4.159 17 C -0.151 4.151 18 C -0.151 4.151 19 C -0.173 4.173 20 C -0.151 4.151 21 C -0.176 4.176 22 C -0.163 4.163 23 C -0.164 4.164 24 H 0.073 0.927 25 H 0.109 0.891 26 H 0.040 0.960 27 H 0.096 0.904 28 H 0.034 0.966 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.103 0.897 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.110 0.890 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.315 -5.561 -6.694 11.369 hybrid contribution -0.011 1.382 0.742 1.568 sum -7.326 -4.179 -5.952 10.323 Atomic orbital electron populations 1.22919 0.81643 1.02676 0.99654 1.87838 1.19635 1.28205 1.94936 1.22684 0.96409 0.83537 0.93499 0.95046 1.20946 0.92219 1.00253 0.83530 1.43866 1.82468 1.01022 1.02790 1.18964 1.16332 0.96145 1.05931 0.93338 1.25717 0.95066 1.01890 1.00309 1.70098 1.15292 1.24408 1.46252 0.85676 0.78529 0.80188 0.78477 1.21429 1.21702 1.20025 1.21333 0.92882 0.84545 0.94298 1.22718 0.98162 0.96511 0.98533 1.22255 0.96129 0.97339 0.99372 1.22014 0.97026 0.97751 0.98274 1.22492 0.98398 0.98032 0.98402 1.23015 0.99453 0.96609 0.95995 1.22884 1.00439 0.95539 0.98689 1.22820 0.98998 0.97838 0.96688 1.22908 0.96202 0.98470 0.98863 0.92718 0.89062 0.95960 0.90444 0.96583 0.94149 0.93307 0.92326 0.93907 0.90866 0.91148 0.92789 0.91019 0.94024 0.94268 0.89652 0.91818 0.92133 0.89023 0.90523 0.90471 0.90392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 10.58 113.37 1.20 2.01 16 2 O -0.39 -14.51 9.51 -148.98 -1.42 -15.93 16 3 C 0.10 3.93 2.28 30.59 0.07 4.00 16 4 H 0.03 1.39 7.62 -2.39 -0.02 1.37 16 5 C 0.16 7.52 4.98 86.38 0.43 7.95 16 6 N -0.58 -29.02 2.38 -671.39 -1.60 -30.62 16 7 C -0.24 -13.14 7.80 84.03 0.66 -12.48 16 8 H 0.05 2.68 6.63 -2.91 -0.02 2.67 16 9 C -0.03 -1.80 4.97 84.86 0.42 -1.38 16 10 N -0.92 -52.92 11.48 21.65 0.25 -52.67 16 11 Si 0.94 44.59 29.60 68.60 2.03 46.62 16 12 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 13 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 14 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 15 C 0.18 7.70 2.83 46.19 0.13 7.83 16 16 C -0.12 -4.57 6.46 32.01 0.21 -4.36 16 17 C -0.11 -3.46 6.82 31.67 0.22 -3.24 16 18 C -0.11 -3.72 6.80 31.32 0.21 -3.51 16 19 C -0.13 -5.66 6.42 31.32 0.20 -5.46 16 20 C -0.13 -4.31 3.34 -10.27 -0.03 -4.35 16 21 C -0.14 -4.33 7.63 31.18 0.24 -4.09 16 22 C -0.13 -3.00 8.09 31.18 0.25 -2.74 16 23 C -0.13 -3.28 6.14 31.12 0.19 -3.08 16 24 H 0.05 1.40 5.04 -2.39 -0.01 1.39 16 25 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 26 H 0.02 0.70 8.08 -2.39 -0.02 0.68 16 27 H 0.08 4.17 5.55 -2.39 -0.01 4.16 16 28 H 0.02 0.77 7.94 -2.39 -0.02 0.75 16 29 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 30 H 0.05 2.14 7.85 -2.38 -0.02 2.13 16 31 H 0.06 2.15 8.00 -2.39 -0.02 2.13 16 32 H 0.04 1.81 6.53 -2.38 -0.02 1.80 16 33 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.04 2.08 6.99 -2.39 -0.02 2.06 16 38 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 40 H 0.06 2.19 7.99 -2.38 -0.02 2.17 16 41 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.08 2.01 6.49 -2.38 -0.02 1.99 16 Total: -1.00 -59.95 342.04 4.59 -55.36 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.93 Total: 20.13 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: 4.39 Total: -22.90 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -1.35 Total: -83.29 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -1.42 Total: -15.93 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -59.95 4.59 -55.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595329105.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.295 kcal (2) G-P(sol) polarization free energy of solvation -59.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds