Wall clock time and date at job start Mon Mar 30 2020 08:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99928 * 2 1 4 4 H 1.08998 * 109.47460 * 18.98407 * 3 2 1 5 5 C 1.53004 * 109.47054 * 258.98429 * 3 2 1 6 6 N 1.46502 * 109.46975 * 65.64581 * 5 3 2 7 7 C 1.36938 * 119.99426 * 269.58737 * 6 5 3 8 8 H 1.08001 * 119.99569 * 142.97374 * 7 6 5 9 9 C 1.38812 * 120.00492 * 322.97606 * 7 6 5 10 10 N 1.31611 * 120.00101 * 158.32050 * 9 7 6 11 11 Si 1.86801 * 119.99669 * 338.32432 * 9 7 6 12 12 H 1.48496 * 109.47215 * 92.29680 * 11 9 7 13 13 H 1.48500 * 109.46581 * 212.29331 * 11 9 7 14 14 H 1.48498 * 109.47021 * 332.29267 * 11 9 7 15 15 C 1.46500 * 120.00373 * 89.58946 * 6 5 3 16 16 C 1.54257 * 110.03268 * 239.26161 * 15 6 5 17 17 C 1.54961 * 104.16040 * 217.13641 * 16 15 6 18 18 C 1.54893 * 102.77704 * 37.88870 * 17 16 15 19 19 C 1.53875 * 110.02874 * 122.04353 * 15 6 5 20 20 C 1.53002 * 109.47552 * 138.98522 * 3 2 1 21 21 C 1.53784 * 113.61144 * 297.12093 * 20 3 2 22 22 C 1.53789 * 87.07667 * 220.01430 * 21 20 3 23 23 C 1.53777 * 87.17282 * 25.39098 * 22 21 20 24 24 H 1.09000 * 109.46844 * 305.25555 * 1 2 3 25 25 H 1.08997 * 109.47048 * 65.25420 * 1 2 3 26 26 H 1.09003 * 109.47085 * 185.25969 * 1 2 3 27 27 H 1.09002 * 109.46790 * 185.64340 * 5 3 2 28 28 H 1.09000 * 109.47425 * 305.64174 * 5 3 2 29 29 H 0.97000 * 120.00311 * 179.97438 * 10 9 7 30 30 H 1.09002 * 110.01572 * 0.65728 * 15 6 5 31 31 H 1.09000 * 110.49079 * 335.78537 * 16 15 6 32 32 H 1.09006 * 110.49134 * 98.42754 * 16 15 6 33 33 H 1.09001 * 110.72319 * 279.56910 * 17 16 15 34 34 H 1.09002 * 110.92482 * 156.29934 * 17 16 15 35 35 H 1.09001 * 110.48641 * 203.40376 * 18 17 16 36 36 H 1.09000 * 110.59610 * 80.82256 * 18 17 16 37 37 H 1.08999 * 110.03054 * 238.56765 * 19 15 6 38 38 H 1.08995 * 110.03792 * 359.97438 * 19 15 6 39 39 H 1.09006 * 112.84961 * 68.30764 * 20 3 2 40 40 H 1.08998 * 113.61924 * 105.46810 * 21 20 3 41 41 H 1.09003 * 113.60922 * 334.55716 * 21 20 3 42 42 H 1.09005 * 113.61154 * 139.97726 * 22 21 20 43 43 H 1.08997 * 113.61047 * 270.79524 * 22 21 20 44 44 H 1.09000 * 113.61930 * 89.16031 * 23 22 21 45 45 H 1.09007 * 113.61335 * 220.05895 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2703 2.0327 0.3343 5 6 2.4694 1.6593 -1.4160 6 7 1.3023 1.7692 -2.2947 7 6 0.8492 0.6686 -2.9719 8 1 -0.2113 0.5187 -3.1103 9 6 1.7529 -0.2543 -3.4803 10 7 1.3617 -1.4836 -3.7408 11 14 3.5242 0.2487 -3.7947 12 1 4.3451 -0.0539 -2.5948 13 1 4.0535 -0.5052 -4.9595 14 1 3.5821 1.7049 -4.0798 15 6 0.6201 3.0564 -2.4489 16 6 -0.8549 2.9280 -2.0159 17 6 -1.6231 3.8296 -3.0150 18 6 -0.8713 3.5834 -4.3466 19 6 0.6099 3.4734 -3.9300 20 6 3.2120 1.3288 0.9466 21 6 2.8452 1.0540 2.4146 22 6 3.8601 2.1466 2.7906 23 6 3.6186 2.7445 1.3945 24 1 -0.3633 0.5932 0.8392 25 1 -0.3633 0.4302 -0.9333 26 1 -0.3633 -1.0234 0.0942 27 1 3.0018 2.6103 -1.3982 28 1 3.1326 0.8786 -1.7886 29 1 1.9931 -2.1284 -4.0965 30 1 1.1201 3.8178 -1.8501 31 1 -1.1888 1.8939 -2.1010 32 1 -0.9860 3.2894 -0.9960 33 1 -1.5548 4.8769 -2.7206 34 1 -2.6651 3.5203 -3.0967 35 1 -1.0150 4.4231 -5.0267 36 1 -1.2071 2.6561 -4.8108 37 1 1.1041 4.4375 -4.0499 38 1 1.1129 2.7183 -4.5340 39 1 4.0470 0.7283 0.5855 40 1 3.1286 0.0586 2.7565 41 1 1.8153 1.3107 2.6627 42 1 3.5270 2.7903 3.6048 43 1 4.8728 1.7705 2.9354 44 1 2.8006 3.4642 1.3632 45 1 4.5255 3.1119 0.9140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595329106.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:47:20 Heat of formation + Delta-G solvation = -9.049996 kcal Electronic energy + Delta-G solvation = -22629.817952 eV Core-core repulsion = 19648.554930 eV Total energy + Delta-G solvation = -2981.263022 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.13337 -37.81409 -36.24333 -34.03905 -31.44730 -29.55750 -27.96124 -26.90559 -25.62322 -25.10589 -24.84390 -22.49635 -20.96321 -19.98025 -19.17000 -18.89257 -16.49322 -15.94212 -15.56006 -15.32409 -14.85254 -14.68787 -14.17938 -14.12932 -13.32798 -13.10602 -12.72099 -12.45269 -12.26040 -12.17140 -12.15831 -11.76831 -11.28810 -11.21162 -10.89501 -10.71850 -10.53375 -10.48268 -10.38427 -10.34683 -10.24401 -10.10833 -9.98177 -9.89325 -9.75799 -9.53817 -9.28162 -8.60765 -8.24100 -6.64030 -5.86322 -3.26079 3.40234 3.53713 3.57360 4.52471 4.63979 4.80428 4.90891 5.00296 5.10116 5.31018 5.32159 5.35786 5.51273 5.63415 5.71684 5.80887 5.92415 6.01096 6.03108 6.04363 6.07362 6.17047 6.17414 6.18448 6.22860 6.29947 6.33954 6.36897 6.42334 6.50517 6.53536 6.58391 6.60365 6.72206 6.74465 6.88399 6.91538 6.98507 7.15518 7.20856 8.17269 8.26946 8.49111 9.11084 9.86045 10.24340 11.29538 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015014 B = 0.008788 C = 0.007107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.521209 B = 3185.370992 C = 3938.563630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.363 6.363 3 C 0.089 3.911 4 H 0.048 0.952 5 C 0.116 3.884 6 N -0.599 5.599 7 C -0.251 4.251 8 H 0.079 0.921 9 C 0.046 3.954 10 N -0.898 5.898 11 Si 0.873 3.127 12 H -0.286 1.286 13 H -0.307 1.307 14 H -0.272 1.272 15 C 0.172 3.828 16 C -0.135 4.135 17 C -0.122 4.122 18 C -0.116 4.116 19 C -0.134 4.134 20 C -0.113 4.113 21 C -0.127 4.127 22 C -0.143 4.143 23 C -0.132 4.132 24 H 0.009 0.991 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.041 0.959 28 H 0.063 0.937 29 H 0.260 0.740 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.047 0.953 36 H 0.065 0.935 37 H 0.042 0.958 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.022 9.611 8.303 12.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.281 6.281 3 C 0.029 3.971 4 H 0.066 0.934 5 C -0.010 4.010 6 N -0.320 5.320 7 C -0.379 4.379 8 H 0.096 0.904 9 C -0.155 4.155 10 N -0.539 5.539 11 Si 0.705 3.295 12 H -0.214 1.214 13 H -0.236 1.236 14 H -0.197 1.197 15 C 0.065 3.935 16 C -0.174 4.174 17 C -0.160 4.160 18 C -0.154 4.154 19 C -0.173 4.173 20 C -0.132 4.132 21 C -0.164 4.164 22 C -0.181 4.181 23 C -0.170 4.170 24 H 0.027 0.973 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.060 0.940 38 H 0.098 0.902 39 H 0.108 0.892 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.179 9.268 8.213 12.385 hybrid contribution 0.911 0.340 -0.244 1.003 sum 1.090 9.608 7.969 12.530 Atomic orbital electron populations 1.22748 0.81762 1.00660 1.00120 1.87831 1.19258 1.26201 1.94838 1.22718 0.93103 0.85608 0.95718 0.93395 1.21759 0.90653 0.98654 0.89909 1.44272 1.32981 1.05620 1.49095 1.18430 0.92729 0.97346 1.29415 0.90370 1.25321 0.97159 0.95577 0.97404 1.69838 1.35305 1.02435 1.46372 0.87059 0.87491 0.78682 0.76314 1.21419 1.23578 1.19747 1.21039 0.91754 0.87234 0.93466 1.22864 0.97269 1.00567 0.96739 1.22426 0.98388 0.98809 0.96377 1.22235 0.96254 1.00520 0.96417 1.22560 0.95720 0.99894 0.99101 1.22755 0.99005 0.96735 0.94742 1.22764 0.98803 0.98566 0.96278 1.22835 0.99643 0.98654 0.96961 1.22922 1.01278 0.96452 0.96341 0.97257 0.90915 0.91691 0.94060 0.91927 0.93028 0.93326 0.90178 0.93615 0.92769 0.92732 0.93384 0.91595 0.93969 0.90240 0.89249 0.91730 0.90629 0.91964 0.90540 0.90273 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.88 10.40 101.05 1.05 1.93 16 2 O -0.36 -8.02 9.82 -35.23 -0.35 -8.37 16 3 C 0.09 1.71 2.17 -26.73 -0.06 1.65 16 4 H 0.05 0.88 7.48 -51.93 -0.39 0.50 16 5 C 0.12 2.49 4.14 -4.04 -0.02 2.47 16 6 N -0.60 -13.30 1.58 -164.39 -0.26 -13.56 16 7 C -0.25 -6.52 5.96 -15.06 -0.09 -6.61 16 8 H 0.08 2.21 6.68 -52.49 -0.35 1.86 16 9 C 0.05 1.29 5.32 -17.43 -0.09 1.20 16 10 N -0.90 -27.06 13.97 55.49 0.78 -26.29 16 11 Si 0.87 22.46 25.09 -169.99 -4.27 18.19 16 12 H -0.29 -7.31 6.53 56.52 0.37 -6.94 16 13 H -0.31 -8.13 7.11 56.52 0.40 -7.73 16 14 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 15 C 0.17 3.28 3.42 -66.82 -0.23 3.05 16 16 C -0.14 -2.35 6.24 -25.04 -0.16 -2.51 16 17 C -0.12 -1.85 6.91 -24.70 -0.17 -2.02 16 18 C -0.12 -1.92 6.83 -25.07 -0.17 -2.09 16 19 C -0.13 -2.49 6.26 -25.61 -0.16 -2.65 16 20 C -0.11 -1.84 3.35 -89.71 -0.30 -2.14 16 21 C -0.13 -1.79 7.50 -25.91 -0.19 -1.98 16 22 C -0.14 -1.71 8.08 -25.92 -0.21 -1.92 16 23 C -0.13 -1.75 7.51 -25.83 -0.19 -1.95 16 24 H 0.01 0.16 8.00 -51.93 -0.42 -0.26 16 25 H 0.07 1.59 4.18 -51.93 -0.22 1.38 16 26 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.04 0.81 7.82 -51.93 -0.41 0.40 16 28 H 0.06 1.53 3.07 -51.93 -0.16 1.37 16 29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.05 0.86 7.83 -51.93 -0.41 0.46 16 31 H 0.08 1.59 5.21 -51.93 -0.27 1.32 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.08 1.74 7.29 -51.93 -0.38 1.36 16 39 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.08 1.01 8.01 -51.93 -0.42 0.60 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 335.01 15.07 5.05 5.05 Total: -1.00 -28.85 335.01 -8.11 -36.96 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -8.07 Total: 1.58 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -0.99 Total: -13.57 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.51 Total: -39.85 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: -0.35 Total: -8.37 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.27 Total: 18.19 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.85 -8.11 -36.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595329106.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.911 kcal (2) G-P(sol) polarization free energy of solvation -28.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds