Wall clock time and date at job start Mon Mar 30 2020 08:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99928 * 2 1 4 4 H 1.08998 * 109.47460 * 18.98407 * 3 2 1 5 5 C 1.53004 * 109.47054 * 258.98429 * 3 2 1 6 6 N 1.46502 * 109.46975 * 65.64581 * 5 3 2 7 7 C 1.36938 * 119.99426 * 269.58737 * 6 5 3 8 8 H 1.08001 * 119.99569 * 142.97374 * 7 6 5 9 9 C 1.38812 * 120.00492 * 322.97606 * 7 6 5 10 10 N 1.31611 * 120.00101 * 158.32050 * 9 7 6 11 11 Si 1.86801 * 119.99669 * 338.32432 * 9 7 6 12 12 H 1.48496 * 109.47215 * 92.29680 * 11 9 7 13 13 H 1.48500 * 109.46581 * 212.29331 * 11 9 7 14 14 H 1.48498 * 109.47021 * 332.29267 * 11 9 7 15 15 C 1.46500 * 120.00373 * 89.58946 * 6 5 3 16 16 C 1.54257 * 110.03268 * 239.26161 * 15 6 5 17 17 C 1.54961 * 104.16040 * 217.13641 * 16 15 6 18 18 C 1.54893 * 102.77704 * 37.88870 * 17 16 15 19 19 C 1.53875 * 110.02874 * 122.04353 * 15 6 5 20 20 C 1.53002 * 109.47552 * 138.98522 * 3 2 1 21 21 C 1.53784 * 113.61144 * 297.12093 * 20 3 2 22 22 C 1.53789 * 87.07667 * 220.01430 * 21 20 3 23 23 C 1.53777 * 87.17282 * 25.39098 * 22 21 20 24 24 H 1.09000 * 109.46844 * 305.25555 * 1 2 3 25 25 H 1.08997 * 109.47048 * 65.25420 * 1 2 3 26 26 H 1.09003 * 109.47085 * 185.25969 * 1 2 3 27 27 H 1.09002 * 109.46790 * 185.64340 * 5 3 2 28 28 H 1.09000 * 109.47425 * 305.64174 * 5 3 2 29 29 H 0.97000 * 120.00311 * 179.97438 * 10 9 7 30 30 H 1.09002 * 110.01572 * 0.65728 * 15 6 5 31 31 H 1.09000 * 110.49079 * 335.78537 * 16 15 6 32 32 H 1.09006 * 110.49134 * 98.42754 * 16 15 6 33 33 H 1.09001 * 110.72319 * 279.56910 * 17 16 15 34 34 H 1.09002 * 110.92482 * 156.29934 * 17 16 15 35 35 H 1.09001 * 110.48641 * 203.40376 * 18 17 16 36 36 H 1.09000 * 110.59610 * 80.82256 * 18 17 16 37 37 H 1.08999 * 110.03054 * 238.56765 * 19 15 6 38 38 H 1.08995 * 110.03792 * 359.97438 * 19 15 6 39 39 H 1.09006 * 112.84961 * 68.30764 * 20 3 2 40 40 H 1.08998 * 113.61924 * 105.46810 * 21 20 3 41 41 H 1.09003 * 113.60922 * 334.55716 * 21 20 3 42 42 H 1.09005 * 113.61154 * 139.97726 * 22 21 20 43 43 H 1.08997 * 113.61047 * 270.79524 * 22 21 20 44 44 H 1.09000 * 113.61930 * 89.16031 * 23 22 21 45 45 H 1.09007 * 113.61335 * 220.05895 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2703 2.0327 0.3343 5 6 2.4694 1.6593 -1.4160 6 7 1.3023 1.7692 -2.2947 7 6 0.8492 0.6686 -2.9719 8 1 -0.2113 0.5187 -3.1103 9 6 1.7529 -0.2543 -3.4803 10 7 1.3617 -1.4836 -3.7408 11 14 3.5242 0.2487 -3.7947 12 1 4.3451 -0.0539 -2.5948 13 1 4.0535 -0.5052 -4.9595 14 1 3.5821 1.7049 -4.0798 15 6 0.6201 3.0564 -2.4489 16 6 -0.8549 2.9280 -2.0159 17 6 -1.6231 3.8296 -3.0150 18 6 -0.8713 3.5834 -4.3466 19 6 0.6099 3.4734 -3.9300 20 6 3.2120 1.3288 0.9466 21 6 2.8452 1.0540 2.4146 22 6 3.8601 2.1466 2.7906 23 6 3.6186 2.7445 1.3945 24 1 -0.3633 0.5932 0.8392 25 1 -0.3633 0.4302 -0.9333 26 1 -0.3633 -1.0234 0.0942 27 1 3.0018 2.6103 -1.3982 28 1 3.1326 0.8786 -1.7886 29 1 1.9931 -2.1284 -4.0965 30 1 1.1201 3.8178 -1.8501 31 1 -1.1888 1.8939 -2.1010 32 1 -0.9860 3.2894 -0.9960 33 1 -1.5548 4.8769 -2.7206 34 1 -2.6651 3.5203 -3.0967 35 1 -1.0150 4.4231 -5.0267 36 1 -1.2071 2.6561 -4.8108 37 1 1.1041 4.4375 -4.0499 38 1 1.1129 2.7183 -4.5340 39 1 4.0470 0.7283 0.5855 40 1 3.1286 0.0586 2.7565 41 1 1.8153 1.3107 2.6627 42 1 3.5270 2.7903 3.6048 43 1 4.8728 1.7705 2.9354 44 1 2.8006 3.4642 1.3632 45 1 4.5255 3.1119 0.9140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595329106.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:47:20 Heat of formation + Delta-G solvation = -24.959460 kcal Electronic energy + Delta-G solvation = -22630.507838 eV Core-core repulsion = 19648.554930 eV Total energy + Delta-G solvation = -2981.952909 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.50403 -39.23929 -37.72511 -35.78556 -33.47394 -31.09195 -29.37192 -28.49148 -27.12143 -26.50181 -26.25479 -24.15241 -22.48399 -21.32389 -20.56991 -20.30708 -18.37295 -17.52833 -17.15251 -16.86284 -16.29928 -16.00089 -15.83539 -15.78352 -14.91338 -14.56316 -14.41780 -14.04980 -13.98655 -13.66283 -13.28038 -13.09925 -12.94211 -12.83655 -12.53587 -12.27817 -12.11025 -12.02528 -11.83385 -11.74347 -11.71571 -11.52269 -11.30955 -11.24427 -11.15197 -11.11744 -11.03911 -10.49945 -10.11333 -8.50999 -8.04740 -5.37437 1.31489 1.39619 1.48329 2.51631 3.09653 3.15442 3.41291 3.77778 3.86383 3.95976 3.98524 4.02759 4.12730 4.26283 4.31471 4.52714 4.58373 4.68076 4.68977 4.74095 4.76703 4.85062 4.89019 4.89315 4.92291 4.93289 4.97359 4.99096 5.11541 5.13969 5.19725 5.20993 5.23806 5.28072 5.33939 5.41549 5.56978 5.62851 5.64411 5.68926 6.10245 6.33063 6.69636 7.15607 7.81869 8.21600 9.15476 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015014 B = 0.008788 C = 0.007107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.521209 B = 3185.370992 C = 3938.563630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.394 6.394 3 C 0.094 3.906 4 H 0.061 0.939 5 C 0.110 3.890 6 N -0.606 5.606 7 C -0.203 4.203 8 H 0.048 0.952 9 C -0.014 4.014 10 N -0.949 5.949 11 Si 0.925 3.075 12 H -0.287 1.287 13 H -0.322 1.322 14 H -0.261 1.261 15 C 0.164 3.836 16 C -0.131 4.131 17 C -0.111 4.111 18 C -0.115 4.115 19 C -0.134 4.134 20 C -0.127 4.127 21 C -0.127 4.127 22 C -0.128 4.128 23 C -0.124 4.124 24 H 0.041 0.959 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.031 0.969 29 H 0.253 0.747 30 H 0.074 0.926 31 H 0.046 0.954 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.038 0.962 37 H 0.067 0.933 38 H 0.038 0.962 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.120 13.183 10.263 16.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.312 6.312 3 C 0.034 3.966 4 H 0.079 0.921 5 C -0.015 4.015 6 N -0.328 5.328 7 C -0.333 4.333 8 H 0.065 0.935 9 C -0.209 4.209 10 N -0.595 5.595 11 Si 0.757 3.243 12 H -0.216 1.216 13 H -0.252 1.252 14 H -0.185 1.185 15 C 0.058 3.942 16 C -0.170 4.170 17 C -0.149 4.149 18 C -0.153 4.153 19 C -0.174 4.174 20 C -0.146 4.146 21 C -0.164 4.164 22 C -0.166 4.166 23 C -0.161 4.161 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.057 0.943 37 H 0.085 0.915 38 H 0.057 0.943 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.108 0.892 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.282 12.900 10.194 16.444 hybrid contribution 0.793 -0.701 -0.820 1.339 sum 1.075 12.199 9.374 15.422 Atomic orbital electron populations 1.22679 0.81180 1.00824 1.00151 1.87811 1.20135 1.28372 1.94920 1.22732 0.94299 0.84610 0.94938 0.92067 1.21839 0.89913 0.98830 0.90939 1.44370 1.33246 1.06015 1.49126 1.18194 0.91096 0.97493 1.26483 0.93453 1.25799 1.00149 0.95801 0.99162 1.69960 1.36116 1.03599 1.49822 0.86194 0.84274 0.78502 0.75318 1.21553 1.25221 1.18540 1.21334 0.92585 0.85973 0.94331 1.22757 0.96247 0.99342 0.98620 1.22397 0.98287 0.99876 0.94336 1.22211 0.94944 1.00343 0.97789 1.22538 0.97003 0.99806 0.98011 1.22815 0.97191 0.99346 0.95268 1.22774 0.99783 0.99301 0.94553 1.22774 0.99363 0.97531 0.96889 1.22931 1.01901 0.94516 0.96779 0.94101 0.93233 0.92190 0.91570 0.95090 0.93815 0.90786 0.93552 0.91612 0.89840 0.91779 0.90705 0.94294 0.91462 0.94310 0.91194 0.92372 0.90322 0.89787 0.89770 0.89181 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.93 10.40 113.37 1.18 3.11 16 2 O -0.39 -17.42 9.82 -148.98 -1.46 -18.88 16 3 C 0.09 3.47 2.17 30.60 0.07 3.54 16 4 H 0.06 2.08 7.48 -2.39 -0.02 2.06 16 5 C 0.11 4.59 4.14 86.38 0.36 4.94 16 6 N -0.61 -26.61 1.58 -674.01 -1.07 -27.68 16 7 C -0.20 -10.85 5.96 84.03 0.50 -10.34 16 8 H 0.05 2.83 6.68 -2.91 -0.02 2.81 16 9 C -0.01 -0.81 5.32 84.86 0.45 -0.36 16 10 N -0.95 -60.23 13.97 21.65 0.30 -59.93 16 11 Si 0.92 48.11 25.09 68.60 1.72 49.83 16 12 H -0.29 -14.78 6.53 99.48 0.65 -14.13 16 13 H -0.32 -17.36 7.11 99.48 0.71 -16.65 16 14 H -0.26 -12.83 7.11 99.48 0.71 -12.12 16 15 C 0.16 5.85 3.42 45.71 0.16 6.01 16 16 C -0.13 -4.25 6.24 31.69 0.20 -4.05 16 17 C -0.11 -3.01 6.91 31.91 0.22 -2.79 16 18 C -0.12 -3.57 6.83 31.67 0.22 -3.35 16 19 C -0.13 -4.75 6.26 31.32 0.20 -4.56 16 20 C -0.13 -3.90 3.35 -10.21 -0.03 -3.94 16 21 C -0.13 -3.27 7.50 31.12 0.23 -3.03 16 22 C -0.13 -2.57 8.08 31.12 0.25 -2.32 16 23 C -0.12 -2.82 7.51 31.18 0.23 -2.59 16 24 H 0.04 1.35 8.00 -2.39 -0.02 1.33 16 25 H 0.05 2.20 4.18 -2.39 -0.01 2.19 16 26 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.07 2.41 7.82 -2.39 -0.02 2.39 16 28 H 0.03 1.51 3.07 -2.39 -0.01 1.51 16 29 H 0.25 15.64 8.31 -92.71 -0.77 14.87 16 30 H 0.07 2.31 7.83 -2.39 -0.02 2.29 16 31 H 0.05 1.84 5.21 -2.39 -0.01 1.82 16 32 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.04 1.39 8.14 -2.39 -0.02 1.38 16 37 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.04 1.68 7.29 -2.39 -0.02 1.67 16 39 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 40 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.08 1.98 8.10 -2.39 -0.02 1.96 16 42 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 43 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.09 1.88 8.01 -2.39 -0.02 1.86 16 45 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 Total: -1.00 -65.80 335.01 4.60 -61.19 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.88 Total: 15.18 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: 4.23 Total: -19.73 kcal Atomic # 7 Polarization: -86.84 SS G_CDS: -0.77 Total: -87.60 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -1.46 Total: -18.88 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 1.72 Total: 49.83 kcal Total: -65.80 4.60 -61.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595329106.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.235 kcal (2) G-P(sol) polarization free energy of solvation -65.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds